Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007348.1

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Forward (+)

19479 .. 22000

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007348.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgagttgcaaatgctttggtgctgcttcagttgtggggaggagaaggagtagttcaggtcagactaaccatggtctggatggtgatttgccggaaaatgttagaagtttctcccataatgaattgaaattggcgaccaataattttcatgcgagcaataagatagggcaaggaggttttggaattgtgtacaagggaaccctaaaaaatggaaggcaagttgctgtgaagacactttctgctaggtcgaagcagggagtccgtgaattcttaaatgagattaacactatatcaaatgtccggcatccaaaccttgttgagttgattgggtgctgtgttcaaggagctgaccggattttggtctatgaatatgttgagaataacagccttgatcgtgcattattaggtgcaaggaataaaaccatcaaactggattgggaaaaaagaaaagccatttgcttgggaattgctaggggtctaacatttcttcatgaagaactgcagccccatattgtccacagagatatcaaagctagtaatatactccttgacagagatttaaatgcaaaaattggagactttgggctggctaaacttttcccagataacatcactcatattagcaccaggattgcaggaacaacaggatatttggcaccagaatatgcattggggggtcagttaaccctgagggccgatgtttatagtttcggcattctcatacttgaaatagttggtggcagaagcagtgccaaggaaaactggggtgggacagaaaagtttctccttgaatgggcatggcaactccacgaagaagggagactattggagctagttgacccggagctggttgactatcctgaggaagaagtccttaggtacatgaaggtggcctttttctgcactcaagccgcatcaagccgaagaccactgatgagccaggttcttgacatgctctcaagaaatatcaggctgaatgagaagcagcttacagctccgggtttcttcaacaactcaggggggctcgcaggaccctcttcgagtaaaaaatatggtaccaactcaactgccagccagatgagttctgtccccgacacaataacccaagtaacgccacggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.18

Weight (kDa)

9.04

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1055
AccB1I	GGYRCC	2 cut(s)	655, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	1 cut(s)	912
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	191, 881, 1057
AfiI	CCNNNNNNNGG	4 cut(s)	76, 358, 793, 847
AgsI	TTSAA	5 cut(s)	127, 341, 728, 791, 1009
AjnI	CCWGG	2 cut(s)	626, 939
AluBI	AGCT	6 cut(s)	347, 533, 832, 847, 988, 995
AluI	AGCT	6 cut(s)	347, 533, 832, 847, 988, 995
Alw26I	GTCTC	2 cut(s)	570, 814
AoxI	GGCC	2 cut(s)	693, 891
ApeKI	GCWGC	3 cut(s)	23, 502, 985
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	780
Asp718I	GGTACC	1 cut(s)	1055
AspS9I	GGNCC	2 cut(s)	693, 1031
AsuC2I	CCSGG	2 cut(s)	842, 999
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	1031
AxyI	CCTNAGG	3 cut(s)	689, 861, 875
BanI	GGYRCC	2 cut(s)	655, 1055
BanII	GRGCYC	1 cut(s)	1026
BbsI	GAAGAC	2 cut(s)	236, 931
BbvI	GCAGC	3 cut(s)	10, 514, 997
BccI	CCATC	2 cut(s)	74, 431
BciT130I	CCWGG	2 cut(s)	628, 941
BcnI	CCSGG	2 cut(s)	842, 999
BcoDI	GTCTC	2 cut(s)	570, 814
BfaI	CTAG	4 cut(s)	243, 471, 534, 833
BfmI	CTRYAG	1 cut(s)	500
BisI	GCNGC	4 cut(s)	24, 503, 912, 986
BlsI	GCNGC	4 cut(s)	25, 504, 913, 987
Bme1390I	CCNGG	4 cut(s)	628, 842, 941, 999
Bme18I	GGWCC	1 cut(s)	1031
BmgT120I	GGNCC	2 cut(s)	693, 1031
BmiI	GGNNCC	4 cut(s)	199, 657, 1033, 1057
BmrFI	CCNGG	4 cut(s)	628, 842, 941, 999
BmrI	ACTGGG	1 cut(s)	772
BmsI	GCATC	2 cut(s)	313, 923
BmuI	ACTGGG	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	236, 931
BpuEI	CTTGAG	2 cut(s)	891, 943
BpuMI	CCSGG	2 cut(s)	842, 999
BsaJI	CCNNGG	3 cut(s)	70, 753, 1115
BsaWI	WCCGGW	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 358, 793, 847
Bse1I	ACTGG	2 cut(s)	435, 767
Bse21I	CCTNAGG	3 cut(s)	689, 861, 875
BseBI	CCWGG	2 cut(s)	628, 941
BseDI	CCNNGG	3 cut(s)	70, 753, 1115
BseGI	GGATG	2 cut(s)	85, 304
BseLI	CCNNNNNNNGG	4 cut(s)	76, 358, 793, 847
BseMII	CTCAG	3 cut(s)	680, 852, 1029
BseNI	ACTGG	2 cut(s)	435, 767
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	10, 514, 997
BsgI	GTGCAG	1 cut(s)	886
BshFI	GGCC	2 cut(s)	695, 893
BshNI	GGYRCC	2 cut(s)	655, 1055
BsiSI	CCGG	5 cut(s)	92, 301, 352, 842, 998
BslFI	GGGAC	2 cut(s)	784, 1073
BslI	CCNNNNNNNGG	4 cut(s)	76, 358, 793, 847
BsmAI	GTCTC	2 cut(s)	570, 814
BsmFI	GGGAC	2 cut(s)	784, 1073
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	2 cut(s)	695, 893
Bsp1286I	GDGCHC	1 cut(s)	1026
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	1 cut(s)	912
BspANI	GGCC	2 cut(s)	695, 893
BspCNI	CTCAG	3 cut(s)	681, 853, 1028
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	4 cut(s)	199, 657, 1033, 1057
BspMAI	CTGCAG	1 cut(s)	504
BspT107I	GGYRCC	2 cut(s)	655, 1055
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	435, 767
BssECI	CCNNGG	3 cut(s)	70, 753, 1115
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	70, 753
Bst2UI	CCWGG	2 cut(s)	628, 941
Bst4CI	ACNGT	1 cut(s)	1119
Bst6I	CTCTTC	1 cut(s)	1042
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	154, 588, 1026, 1072
BstDEI	CTNAG	4 cut(s)	689, 861, 875, 1015
BstDSI	CCRYGG	2 cut(s)	70, 1115
BstF5I	GGATG	2 cut(s)	85, 304
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	570, 814
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	628, 941
BstNSI	RCATGY	1 cut(s)	955
BstSCI	CCNGG	4 cut(s)	626, 840, 939, 997
BstSFI	CTRYAG	1 cut(s)	500
BstV1I	GCAGC	3 cut(s)	10, 514, 997
BstV2I	GAAGAC	2 cut(s)	236, 931
BstXI	CCANNNNNNTGG	2 cut(s)	430, 460
Bsu36I	CCTNAGG	3 cut(s)	689, 861, 875
BsuRI	GGCC	2 cut(s)	695, 893
BtgI	CCRYGG	2 cut(s)	70, 1115
BtsCI	GGATG	2 cut(s)	85, 304
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	2 cut(s)	754, 929
Cac8I	GCNNGC	4 cut(s)	154, 588, 1026, 1072
CciI	TCATGA	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	693, 1031
Csp6I	GTAC	3 cut(s)	190, 880, 1056
CviAII	CATG	6 cut(s)	71, 149, 491, 798, 883, 952
CviQI	GTAC	3 cut(s)	190, 880, 1056
DdeI	CTNAG	4 cut(s)	689, 861, 875, 1015
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraI	TTTAAA	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	1042
EarI	CTCTTC	1 cut(s)	1042
Eco130I	CCWWGG	2 cut(s)	70, 753
Eco24I	GRGCYC	1 cut(s)	1026
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	1031
Eco57I	CTGAAG	1 cut(s)	12
Eco81I	CCTNAGG	3 cut(s)	689, 861, 875
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	626, 939
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	70, 753
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	2 cut(s)	70, 753
FaeI	CATG	6 cut(s)	74, 152, 494, 801, 886, 955
FalI	AAGNNNNNCTT	4 cut(s)	858, 890, 878, 910
FaqI	GGGAC	2 cut(s)	784, 1073
FatI	CATG	6 cut(s)	70, 148, 490, 797, 882, 951
Fnu4HI	GCNGC	4 cut(s)	24, 503, 912, 986
FokI	GGATG	2 cut(s)	92, 291
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	4 cut(s)	24, 503, 912, 986
FspBI	CTAG	4 cut(s)	243, 471, 534, 833
GluI	GCNGC	4 cut(s)	24, 503, 912, 986
HaeIII	GGCC	2 cut(s)	695, 893
HapII	CCGG	5 cut(s)	92, 301, 352, 842, 998
Hin1II	CATG	6 cut(s)	74, 152, 494, 801, 886, 955
HincII	GTYRAC	3 cut(s)	684, 838, 853
HindII	GTYRAC	3 cut(s)	684, 838, 853
HinfI	GANTC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	684
HpaII	CCGG	5 cut(s)	92, 301, 352, 842, 998
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	5 cut(s)	190, 517, 684, 838, 853
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	5 cut(s)	77, 491, 860, 947, 960
Hpy8I	GTNNAC	5 cut(s)	190, 517, 684, 838, 853
HpyAV	CCTTC	4 cut(s)	39, 207, 809, 880
HpyCH4III	ACNGT	1 cut(s)	1119
HpyCH4V	TGCA	8 cut(s)	9, 398, 410, 502, 566, 635, 668, 903
HpyF3I	CTNAG	4 cut(s)	689, 861, 875, 1015
Hsp92II	CATG	6 cut(s)	74, 152, 494, 801, 886, 955
KpnI	GGTACC	1 cut(s)	1059
KspAI	GTTAAC	1 cut(s)	684
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	4 cut(s)	344, 829, 844, 1000
Lsp1109I	GCAGC	3 cut(s)	10, 514, 997
LweI	GCATC	2 cut(s)	313, 923
MaeI	CTAG	4 cut(s)	243, 471, 534, 833
MaeIII	GTNAC	1 cut(s)	1108
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	8 cut(s)	241, 479, 506, 824, 878, 936, 997, 1029
MhlI	GDGCHC	1 cut(s)	1026
MluCI	AATT	7 cut(s)	122, 128, 142, 183, 266, 465, 570
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	33, 167, 684, 856, 1045
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	4 cut(s)	272, 282, 560, 683
MslI	CAYNNNNRTG	1 cut(s)	887
MspI	CCGG	5 cut(s)	92, 301, 352, 842, 998
MspR9I	CCNGG	4 cut(s)	628, 842, 941, 999
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	628, 941
NciI	CCSGG	2 cut(s)	842, 999
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	6 cut(s)	74, 152, 494, 801, 886, 955
NlaIV	GGNNCC	4 cut(s)	199, 657, 1033, 1057
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	955
PagI	TCATGA	1 cut(s)	490
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	780
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	25, 504, 913, 987
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	1031
Psp5II	RGGWCCY	1 cut(s)	1031
Psp6I	CCWGG	2 cut(s)	626, 939
PspGI	CCWGG	2 cut(s)	626, 939
PspN4I	GGNNCC	4 cut(s)	199, 657, 1033, 1057
PspPI	GGNCC	2 cut(s)	693, 1031
PspPPI	RGGWCCY	1 cut(s)	1031
PstI	CTGCAG	1 cut(s)	504
RsaI	GTAC	3 cut(s)	191, 881, 1057
RsaNI	GTAC	3 cut(s)	190, 880, 1056
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	4 cut(s)	272, 282, 560, 683
SatI	GCNGC	4 cut(s)	24, 503, 912, 986
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	693, 1031
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	4 cut(s)	628, 842, 941, 999
SduI	GDGCHC	1 cut(s)	1026
SfaNI	GCATC	2 cut(s)	313, 923
SfcI	CTRYAG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	1031
SmiI	ATTTAAAT	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	906, 958
SmoI	CTYRAG	2 cut(s)	906, 958
Sse9I	AATT	7 cut(s)	122, 128, 142, 183, 266, 465, 570
SsiI	CCGC	1 cut(s)	912
SspMI	CTAG	4 cut(s)	243, 471, 534, 833
StyD4I	CCNGG	4 cut(s)	626, 840, 939, 997
StyI	CCWWGG	2 cut(s)	70, 753
SwaI	ATTTAAAT	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	1119
TaqI	TCGA	2 cut(s)	248, 1040
TasI	AATT	7 cut(s)	122, 128, 142, 183, 266, 465, 570
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	914
Tru1I	TTAA	4 cut(s)	272, 282, 560, 683
Tru9I	TTAA	4 cut(s)	272, 282, 560, 683
TscAI	CASTG	2 cut(s)	754, 936
TseI	GCWGC	3 cut(s)	23, 502, 985
TspDTI	ATGAA	6 cut(s)	135, 137, 381, 479, 507, 899
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	754, 936
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	4 cut(s)	243, 471, 534, 833
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.