Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Forward (+)

89629489 .. 89632658

Gene Structure 3170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAGTTGCAAATGCTTTGGTGCTGCTTCAGTTTTGGAGAGGAGGAGGAGTAGTTCAAGTCAGACTAACAATGGTTTGGATGGTGATTTGCCGGAAAATGTTAGAGGTTTCTCCCATCATGAATTGAAATTGGCGACCAATAATTTTCATGCGAGCAATATGATAGGGCGAGGAGGTTTTGGAATTGTGTACAAGGTCGAAGCAGGAGTCCGTGAATTCTTAAATGAGATTAACACTATATCAAATGTTCGGCATCCAAACCTTGTTGAGTTGATTGGGTGCTGTGTTCAAGGAGCTGACCGGATTTTGGTCTATGAATATGTTGAGAATAACAGCCTTGATCGTGCATTATTAGGTGCAAGGAATAAAACCATCAAACTGGATTGGGAAAAAAGAAAAGCCATTTGCTTGGGAATTGCTAGGGGTCTTACATTTCTTCATGAAGAACTGCAGCCCCATATTGTCCACAGAGATATCAAAGCTAGTAATATACTCCTTGACAGAGATTTAAATGCAAAAATTGGAGACTTTGGGCTGGCTAAACTTTTCCCAGATAACATCACTCATATTAGCACCAGGATTGCAGGAACAACAGGTTATTTGGCACCAGAATATGCATTGGGGGGTCAGTTAACCTTGAGGGCTGATGTTTACAGTTTCGGCGTTCTCATACTTGAAATAGTTGGTGGCAGAAGCAGTGCCAAGGAAAACTGGGGTGGGACAGAAAAGTTTCTCCTTGAATGGGCATGGCAACTCCACGAAGAAGGGAGACTATTGGAGCTAGTTGACCCGGAGCTGGTGGACTATCCTGAGGAAGAAGTCCTTAGGTACATGAAGGTGGCCTTTTTCTGCACTCAAGCCGCATCAAACCGAAGACCACTGATGAGCCAGGTTCTTGACATGCTCTCAAGAAATATCAGGCTGAATGAGAAGCAACTTACAGCTCCGGGTTTCTTCAACAACTCAGGGGGGCTTGCAGGACCCTCTTCGAGTAAAAAATATGGTACCGACTCAACTACCAGCAAGATGAGTTCTGTCCCCGACACAATAACTCAAGTAACGCCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

356

Amino Acids

39.51

Weight (kDa)

7.12

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	70 - 300	5.7e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	72 - 235	2.9e-35	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1004
AccB1I	GGYRCC	2 cut(s)	604, 1004
AciI	CCGC	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	191, 830, 1006
AfiI	CCNNNNNNNGG	3 cut(s)	307, 742, 796
AgsI	TTSAA	6 cut(s)	57, 127, 290, 677, 740, 958
AjnI	CCWGG	2 cut(s)	575, 888
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
AluBI	AGCT	5 cut(s)	296, 482, 781, 796, 944
AluI	AGCT	5 cut(s)	296, 482, 781, 796, 944
Alw26I	GTCTC	2 cut(s)	519, 763
AoxI	GGCC	1 cut(s)	840
ApeKI	GCWGC	2 cut(s)	23, 451
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
Asp700I	GAANNNNTTC	1 cut(s)	729
Asp718I	GGTACC	1 cut(s)	1004
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	2 cut(s)	791, 948
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	980
AxyI	CCTNAGG	2 cut(s)	810, 824
BanI	GGYRCC	2 cut(s)	604, 1004
BbsI	GAAGAC	1 cut(s)	880
BbvI	GCAGC	2 cut(s)	10, 463
BccI	CCATC	3 cut(s)	74, 123, 380
BciT130I	CCWGG	2 cut(s)	577, 890
BcnI	CCSGG	2 cut(s)	791, 948
BcoDI	GTCTC	2 cut(s)	519, 763
BfaI	CTAG	3 cut(s)	420, 483, 782
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	3 cut(s)	24, 452, 861
BlsI	GCNGC	3 cut(s)	25, 453, 862
Bme1390I	CCNGG	4 cut(s)	577, 791, 890, 948
Bme18I	GGWCC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	3 cut(s)	606, 982, 1006
BmrFI	CCNGG	4 cut(s)	577, 791, 890, 948
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	2 cut(s)	262, 872
BmuI	ACTGGG	1 cut(s)	721
BpiI	GAAGAC	1 cut(s)	880
BpuEI	CTTGAG	4 cut(s)	658, 840, 892, 1038
BpuMI	CCSGG	2 cut(s)	791, 948
BsaJI	CCNNGG	2 cut(s)	702, 1064
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 37, 64, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 742, 796
Bse1I	ACTGG	2 cut(s)	384, 716
Bse21I	CCTNAGG	2 cut(s)	810, 824
BseBI	CCWGG	2 cut(s)	577, 890
BseDI	CCNNGG	2 cut(s)	702, 1064
BseGI	GGATG	2 cut(s)	85, 253
BseLI	CCNNNNNNNGG	3 cut(s)	307, 742, 796
BseMII	CTCAG	2 cut(s)	801, 978
BseNI	ACTGG	2 cut(s)	384, 716
BseRI	GAGGAG	4 cut(s)	55, 58, 61, 186
BseXI	GCAGC	2 cut(s)	10, 463
BsgI	GTGCAG	1 cut(s)	835
BshFI	GGCC	1 cut(s)	842
BshNI	GGYRCC	2 cut(s)	604, 1004
BsiSI	CCGG	4 cut(s)	92, 301, 791, 947
BslFI	GGGAC	2 cut(s)	733, 1022
BslI	CCNNNNNNNGG	3 cut(s)	307, 742, 796
BsmAI	GTCTC	2 cut(s)	519, 763
BsmFI	GGGAC	2 cut(s)	733, 1022
BsnI	GGCC	1 cut(s)	842
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	861
BspANI	GGCC	1 cut(s)	842
BspCNI	CTCAG	2 cut(s)	802, 977
BspHI	TCATGA	2 cut(s)	118, 439
BspLI	GGNNCC	3 cut(s)	606, 982, 1006
BspMAI	CTGCAG	1 cut(s)	453
BspT107I	GGYRCC	2 cut(s)	604, 1004
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	384, 716
BssECI	CCNNGG	2 cut(s)	702, 1064
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	577, 890
Bst4CI	ACNGT	2 cut(s)	656, 1068
Bst6I	CTCTTC	1 cut(s)	991
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	154, 537, 975
BstDEI	CTNAG	3 cut(s)	810, 824, 964
BstDSI	CCRYGG	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	85, 253
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	519, 763
BstMBI	GATC	1 cut(s)	340
BstNI	CCWGG	2 cut(s)	577, 890
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	4 cut(s)	575, 789, 888, 946
BstSFI	CTRYAG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	10, 463
BstV2I	GAAGAC	1 cut(s)	880
BstXI	CCANNNNNNTGG	2 cut(s)	379, 409
Bsu36I	CCTNAGG	2 cut(s)	810, 824
BsuRI	GGCC	1 cut(s)	842
BtgI	CCRYGG	1 cut(s)	1064
BtsCI	GGATG	2 cut(s)	85, 253
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	703, 878
Cac8I	GCNNGC	3 cut(s)	154, 537, 975
CciI	TCATGA	2 cut(s)	118, 439
Cfr13I	GGNCC	1 cut(s)	980
Csp6I	GTAC	3 cut(s)	190, 829, 1005
CviAII	CATG	6 cut(s)	119, 149, 440, 747, 832, 901
CviQI	GTAC	3 cut(s)	190, 829, 1005
DdeI	CTNAG	3 cut(s)	810, 824, 964
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	991
EarI	CTCTTC	1 cut(s)	991
Eco130I	CCWWGG	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	12
Eco81I	CCTNAGG	2 cut(s)	810, 824
EcoO109I	RGGNCCY	1 cut(s)	980
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	575, 888
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	702
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	6 cut(s)	122, 152, 443, 750, 835, 904
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 827, 859
FaqI	GGGAC	2 cut(s)	733, 1022
FatI	CATG	6 cut(s)	118, 148, 439, 746, 831, 900
Fnu4HI	GCNGC	3 cut(s)	24, 452, 861
FokI	GGATG	2 cut(s)	92, 240
Fsp4HI	GCNGC	3 cut(s)	24, 452, 861
FspBI	CTAG	3 cut(s)	420, 483, 782
GluI	GCNGC	3 cut(s)	24, 452, 861
HaeIII	GGCC	1 cut(s)	842
HapII	CCGG	4 cut(s)	92, 301, 791, 947
Hin1II	CATG	6 cut(s)	122, 152, 443, 750, 835, 904
HincII	GTYRAC	2 cut(s)	633, 787
HindII	GTYRAC	2 cut(s)	633, 787
HinfI	GANTC	2 cut(s)	207, 1010
HpaI	GTTAAC	1 cut(s)	633
HpaII	CCGG	4 cut(s)	92, 301, 791, 947
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	6 cut(s)	190, 466, 633, 652, 787, 802
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	5 cut(s)	119, 440, 809, 896, 909
Hpy8I	GTNNAC	6 cut(s)	190, 466, 633, 652, 787, 802
HpyAV	CCTTC	2 cut(s)	758, 829
HpyCH4III	ACNGT	2 cut(s)	656, 1068
HpyCH4V	TGCA	9 cut(s)	9, 347, 359, 451, 515, 584, 617, 852, 977
HpyF3I	CTNAG	3 cut(s)	810, 824, 964
Hsp92II	CATG	6 cut(s)	122, 152, 443, 750, 835, 904
KpnI	GGTACC	1 cut(s)	1008
KspAI	GTTAAC	1 cut(s)	633
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	4 cut(s)	293, 778, 793, 949
Lsp1109I	GCAGC	2 cut(s)	10, 463
LweI	GCATC	2 cut(s)	262, 872
MaeI	CTAG	3 cut(s)	420, 483, 782
MaeIII	GTNAC	1 cut(s)	1057
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	7 cut(s)	428, 455, 773, 827, 885, 946, 978
MluCI	AATT	7 cut(s)	122, 128, 142, 183, 215, 414, 519
MlyI	GAGTC	2 cut(s)	216, 1004
MnlI	CCTC	9 cut(s)	33, 36, 39, 98, 164, 167, 633, 805, 994
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	4 cut(s)	221, 231, 509, 632
MslI	CAYNNNNRTG	1 cut(s)	836
MspI	CCGG	4 cut(s)	92, 301, 791, 947
MspR9I	CCNGG	4 cut(s)	577, 791, 890, 948
MvaI	CCWGG	2 cut(s)	577, 890
NciI	CCSGG	2 cut(s)	791, 948
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	122, 152, 443, 750, 835, 904
NlaIV	GGNNCC	3 cut(s)	606, 982, 1006
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	904
PagI	TCATGA	2 cut(s)	118, 439
PdmI	GAANNNNTTC	1 cut(s)	729
PkrI	GCNGC	3 cut(s)	25, 453, 862
PleI	GAGTC	2 cut(s)	215, 1004
PpsI	GAGTC	2 cut(s)	215, 1004
PpuMI	RGGWCCY	1 cut(s)	980
Psp5II	RGGWCCY	1 cut(s)	980
Psp6I	CCWGG	2 cut(s)	575, 888
PspGI	CCWGG	2 cut(s)	575, 888
PspN4I	GGNNCC	3 cut(s)	606, 982, 1006
PspPI	GGNCC	1 cut(s)	980
PspPPI	RGGWCCY	1 cut(s)	980
PstI	CTGCAG	1 cut(s)	453
RsaI	GTAC	3 cut(s)	191, 830, 1006
RsaNI	GTAC	3 cut(s)	190, 829, 1005
RseI	CAYNNNNRTG	1 cut(s)	836
SaqAI	TTAA	4 cut(s)	221, 231, 509, 632
SatI	GCNGC	3 cut(s)	24, 452, 861
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	2 cut(s)	216, 1004
ScrFI	CCNGG	4 cut(s)	577, 791, 890, 948
SfaNI	GCATC	2 cut(s)	262, 872
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	980
SmiI	ATTTAAAT	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	836
SmlI	CTYRAG	4 cut(s)	637, 855, 907, 1053
SmoI	CTYRAG	4 cut(s)	637, 855, 907, 1053
Sse9I	AATT	7 cut(s)	122, 128, 142, 183, 215, 414, 519
SsiI	CCGC	1 cut(s)	861
SspMI	CTAG	3 cut(s)	420, 483, 782
StyD4I	CCNGG	4 cut(s)	575, 789, 888, 946
StyI	CCWWGG	1 cut(s)	702
SwaI	ATTTAAAT	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	656, 1068
TaqI	TCGA	2 cut(s)	198, 989
TasI	AATT	7 cut(s)	122, 128, 142, 183, 215, 414, 519
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	863
Tru1I	TTAA	4 cut(s)	221, 231, 509, 632
Tru9I	TTAA	4 cut(s)	221, 231, 509, 632
TscAI	CASTG	2 cut(s)	703, 885
TseI	GCWGC	2 cut(s)	23, 451
TspDTI	ATGAA	6 cut(s)	135, 137, 330, 428, 456, 848
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	703, 885
VpaK11BI	GGWCC	1 cut(s)	980
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	3 cut(s)	420, 483, 782
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.