Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

4844261 .. 4847723

Gene Structure 3463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG056600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAGTTGCAAATGCTTTGGTGCTGCTTCAGTTGTGGAGAGGAGAAGGAGTAGTTCAGGTGATTTGCCGGAAAATGTTAGATGTTTCTCCCATAATGAATTGAAATTGGCGACCAATAATTTTCATGCGAGCAATATGATAGGGCGAGGAGGTTTTGGAATTGTGTACAAGGGAACCCTAAAAAATGGAAGGCAAGTTGCTGTGAAGACACTGTCTGCTAGGTCGAAGCAGGGAGTCCGTGAATTCTTAAATGAGATTAACACTATATCAAATGTCCGGCATCCAAACCTTGTTGAGTTGATTGGGTGCTGTGTTCAAGGAGCTGACCGGATTTTGGTCTATGAATATGTTGAGAATAACAGCCTTGATCGTGCATTATTAGGTGCAAGGAATAAAACCATCAAACTGGATTGGGAAAAAAGAAAAGCCATTTGCTTGGGAATTGCTAGGGGTCTTACATTTCTTCATGAAGAACTGCAGCCCCATATTGTCCACAGAGATATCAAAGCTAGTAATATACTCCTTGACAGAGATTTAAATGCAAAAATTGGAGACTTTGGGCTGGCTAAACTTTTCCCAGATAACATCACTCATATTAGCACCAGGATTGCAGGAACAACAGGTTATTTGGCACCAGAATATGCATTGGGGGGTCAGTTAACCCTGAGGGCCGATGTTTACAGTTTCGGCATTCTCATACTTGAAATAGTTGGTGGCAGAAGCAGTGCCAAGGAAAACTGGGGTGGGACAGAAAAGTTTCTCCTTGAATGGGCATGGCAACTCCACGAAGAAGGGAGACTATTGGAGCTAGTTGACCCGGAGCTGGTGGACTATCCTGAGGAAGAAGTCCTTAGGTACATGAAGGTGGCCTTTTTCTGCACTCAAGCCGCATCAAGCCGAAGACCACTGATGAGCCAGGTTCTTGACATGCTCTCAAGAAATATCAGGCTGAATGAGAAGCAACTTACAGCTCCGGGTTTCTTCAACAACTCAGGGGGGCTCGCAGGACCCTCTTCGAGTAAAAAATATGGTACCGACTCAACTACCAACCAGTTGAGTTCTGTCCCCGACACAATAACTCAAGTAACGCCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

40.51

Weight (kDa)

8.88

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	42 - 244	1.1e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	43 - 309	1.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1031
AccB1I	GGYRCC	2 cut(s)	631, 1031
AciI	CCGC	1 cut(s)	888
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	167, 857, 1033
AfiI	CCNNNNNNNGG	3 cut(s)	334, 769, 823
AgsI	TTSAA	5 cut(s)	103, 317, 704, 767, 985
AjnI	CCWGG	2 cut(s)	602, 915
AluBI	AGCT	5 cut(s)	323, 509, 808, 823, 971
AluI	AGCT	5 cut(s)	323, 509, 808, 823, 971
Alw26I	GTCTC	2 cut(s)	546, 790
AoxI	GGCC	2 cut(s)	669, 867
ApeKI	GCWGC	2 cut(s)	23, 478
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	1031
AspS9I	GGNCC	2 cut(s)	669, 1007
AsuC2I	CCSGG	2 cut(s)	818, 975
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	1007
AxyI	CCTNAGG	3 cut(s)	665, 837, 851
BanI	GGYRCC	2 cut(s)	631, 1031
BanII	GRGCYC	1 cut(s)	1002
BbsI	GAAGAC	2 cut(s)	212, 907
BbvI	GCAGC	2 cut(s)	10, 490
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	604, 917
BcnI	CCSGG	2 cut(s)	818, 975
BcoDI	GTCTC	2 cut(s)	546, 790
BfaI	CTAG	4 cut(s)	219, 447, 510, 809
BfmI	CTRYAG	1 cut(s)	476
BisI	GCNGC	3 cut(s)	24, 479, 888
BlsI	GCNGC	3 cut(s)	25, 480, 889
Bme1390I	CCNGG	4 cut(s)	604, 818, 917, 975
Bme18I	GGWCC	1 cut(s)	1007
BmgT120I	GGNCC	2 cut(s)	669, 1007
BmiI	GGNNCC	4 cut(s)	175, 633, 1009, 1033
BmrFI	CCNGG	4 cut(s)	604, 818, 917, 975
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	2 cut(s)	289, 899
BmuI	ACTGGG	1 cut(s)	748
BpiI	GAAGAC	2 cut(s)	212, 907
BpuEI	CTTGAG	3 cut(s)	867, 919, 1065
BpuMI	CCSGG	2 cut(s)	818, 975
BsaJI	CCNNGG	2 cut(s)	729, 1091
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 769, 823
Bse1I	ACTGG	3 cut(s)	411, 743, 1051
Bse21I	CCTNAGG	3 cut(s)	665, 837, 851
BseBI	CCWGG	2 cut(s)	604, 917
BseDI	CCNNGG	2 cut(s)	729, 1091
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	334, 769, 823
BseMII	CTCAG	3 cut(s)	656, 828, 1005
BseNI	ACTGG	3 cut(s)	411, 743, 1051
BseRI	GAGGAG	2 cut(s)	55, 162
BseXI	GCAGC	2 cut(s)	10, 490
BsgI	GTGCAG	1 cut(s)	862
BshFI	GGCC	2 cut(s)	671, 869
BshNI	GGYRCC	2 cut(s)	631, 1031
BsiSI	CCGG	5 cut(s)	68, 277, 328, 818, 974
BslFI	GGGAC	2 cut(s)	760, 1049
BslI	CCNNNNNNNGG	3 cut(s)	334, 769, 823
BsmAI	GTCTC	2 cut(s)	546, 790
BsmFI	GGGAC	2 cut(s)	760, 1049
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	2 cut(s)	671, 869
Bsp1286I	GDGCHC	1 cut(s)	1002
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	888
BspANI	GGCC	2 cut(s)	671, 869
BspCNI	CTCAG	3 cut(s)	657, 829, 1004
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	175, 633, 1009, 1033
BspMAI	CTGCAG	1 cut(s)	480
BspT107I	GGYRCC	2 cut(s)	631, 1031
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	411, 743, 1051
BssECI	CCNNGG	2 cut(s)	729, 1091
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	2 cut(s)	604, 917
Bst4CI	ACNGT	3 cut(s)	213, 683, 1095
Bst6I	CTCTTC	1 cut(s)	1018
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	130, 564, 1002
BstDEI	CTNAG	4 cut(s)	665, 837, 851, 991
BstDSI	CCRYGG	1 cut(s)	1091
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	546, 790
BstMBI	GATC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	604, 917
BstNSI	RCATGY	1 cut(s)	931
BstSCI	CCNGG	4 cut(s)	602, 816, 915, 973
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	10, 490
BstV2I	GAAGAC	2 cut(s)	212, 907
BstXI	CCANNNNNNTGG	2 cut(s)	406, 436
Bsu36I	CCTNAGG	3 cut(s)	665, 837, 851
BsuRI	GGCC	2 cut(s)	671, 869
BtgI	CCRYGG	1 cut(s)	1091
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	730
BtsIMutI	CAGTG	3 cut(s)	209, 730, 905
Cac8I	GCNNGC	3 cut(s)	130, 564, 1002
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	669, 1007
Csp6I	GTAC	3 cut(s)	166, 856, 1032
CviAII	CATG	5 cut(s)	125, 467, 774, 859, 928
CviQI	GTAC	3 cut(s)	166, 856, 1032
DdeI	CTNAG	4 cut(s)	665, 837, 851, 991
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	1018
EarI	CTCTTC	1 cut(s)	1018
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	1002
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	1007
Eco57I	CTGAAG	1 cut(s)	12
Eco81I	CCTNAGG	3 cut(s)	665, 837, 851
EcoO109I	RGGNCCY	1 cut(s)	1007
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	602, 915
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	1002
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	5 cut(s)	128, 470, 777, 862, 931
FalI	AAGNNNNNCTT	4 cut(s)	834, 866, 854, 886
FaqI	GGGAC	2 cut(s)	760, 1049
FatI	CATG	5 cut(s)	124, 466, 773, 858, 927
Fnu4HI	GCNGC	3 cut(s)	24, 479, 888
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	3 cut(s)	24, 479, 888
FspBI	CTAG	4 cut(s)	219, 447, 510, 809
GluI	GCNGC	3 cut(s)	24, 479, 888
HaeIII	GGCC	2 cut(s)	671, 869
HapII	CCGG	5 cut(s)	68, 277, 328, 818, 974
Hin1II	CATG	5 cut(s)	128, 470, 777, 862, 931
HincII	GTYRAC	2 cut(s)	660, 814
HindII	GTYRAC	2 cut(s)	660, 814
HinfI	GANTC	2 cut(s)	234, 1037
HpaI	GTTAAC	1 cut(s)	660
HpaII	CCGG	5 cut(s)	68, 277, 328, 818, 974
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	6 cut(s)	166, 493, 660, 679, 814, 829
Hpy188III	TCNNGA	4 cut(s)	467, 836, 923, 936
Hpy8I	GTNNAC	6 cut(s)	166, 493, 660, 679, 814, 829
HpyAV	CCTTC	4 cut(s)	39, 183, 785, 856
HpyCH4III	ACNGT	3 cut(s)	213, 683, 1095
HpyCH4V	TGCA	8 cut(s)	9, 374, 386, 478, 542, 611, 644, 879
HpyF3I	CTNAG	4 cut(s)	665, 837, 851, 991
Hsp92II	CATG	5 cut(s)	128, 470, 777, 862, 931
KpnI	GGTACC	1 cut(s)	1035
KspAI	GTTAAC	1 cut(s)	660
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	4 cut(s)	320, 805, 820, 976
Lsp1109I	GCAGC	2 cut(s)	10, 490
LweI	GCATC	2 cut(s)	289, 899
MaeI	CTAG	4 cut(s)	219, 447, 510, 809
MaeIII	GTNAC	1 cut(s)	1084
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	8 cut(s)	217, 455, 482, 800, 854, 912, 973, 1005
MhlI	GDGCHC	1 cut(s)	1002
MluCI	AATT	7 cut(s)	98, 104, 118, 159, 242, 441, 546
MlyI	GAGTC	2 cut(s)	243, 1031
MnlI	CCTC	6 cut(s)	33, 140, 143, 660, 832, 1021
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	4 cut(s)	248, 258, 536, 659
MslI	CAYNNNNRTG	1 cut(s)	863
MspI	CCGG	5 cut(s)	68, 277, 328, 818, 974
MspR9I	CCNGG	4 cut(s)	604, 818, 917, 975
Mva1269I	GAATGC	1 cut(s)	690
MvaI	CCWGG	2 cut(s)	604, 917
NciI	CCSGG	2 cut(s)	818, 975
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	5 cut(s)	128, 470, 777, 862, 931
NlaIV	GGNNCC	4 cut(s)	175, 633, 1009, 1033
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	931
PagI	TCATGA	1 cut(s)	466
PctI	GAATGC	1 cut(s)	690
PdmI	GAANNNNTTC	1 cut(s)	756
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	25, 480, 889
PleI	GAGTC	2 cut(s)	242, 1031
PpsI	GAGTC	2 cut(s)	242, 1031
PpuMI	RGGWCCY	1 cut(s)	1007
Psp5II	RGGWCCY	1 cut(s)	1007
Psp6I	CCWGG	2 cut(s)	602, 915
PspGI	CCWGG	2 cut(s)	602, 915
PspN4I	GGNNCC	4 cut(s)	175, 633, 1009, 1033
PspPI	GGNCC	2 cut(s)	669, 1007
PspPPI	RGGWCCY	1 cut(s)	1007
PstI	CTGCAG	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	167, 857, 1033
RsaNI	GTAC	3 cut(s)	166, 856, 1032
RseI	CAYNNNNRTG	1 cut(s)	863
SaqAI	TTAA	4 cut(s)	248, 258, 536, 659
SatI	GCNGC	3 cut(s)	24, 479, 888
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	669, 1007
SchI	GAGTC	2 cut(s)	243, 1031
ScrFI	CCNGG	4 cut(s)	604, 818, 917, 975
SduI	GDGCHC	1 cut(s)	1002
SfaNI	GCATC	2 cut(s)	289, 899
SfcI	CTRYAG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	1007
SmiI	ATTTAAAT	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	3 cut(s)	882, 934, 1080
SmoI	CTYRAG	3 cut(s)	882, 934, 1080
Sse9I	AATT	7 cut(s)	98, 104, 118, 159, 242, 441, 546
SsiI	CCGC	1 cut(s)	888
SspMI	CTAG	4 cut(s)	219, 447, 510, 809
StyD4I	CCNGG	4 cut(s)	602, 816, 915, 973
StyI	CCWWGG	1 cut(s)	729
SwaI	ATTTAAAT	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	213, 683, 1095
TaqI	TCGA	2 cut(s)	224, 1016
TasI	AATT	7 cut(s)	98, 104, 118, 159, 242, 441, 546
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	890
Tru1I	TTAA	4 cut(s)	248, 258, 536, 659
Tru9I	TTAA	4 cut(s)	248, 258, 536, 659
TscAI	CASTG	3 cut(s)	216, 730, 912
TseI	GCWGC	2 cut(s)	23, 478
TspDTI	ATGAA	6 cut(s)	111, 113, 357, 455, 483, 875
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	216, 730, 912
Tth111I	GACNNNGTC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	1007
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	931
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	4 cut(s)	219, 447, 510, 809
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.