MD10G1296800.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
38446353 .. 38449784
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1296800.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGAGTTGCAGCTGCTTCGGTGCTTCAGCTGCTTTCAGGAAAAGGGGTTCTGGTTCTGGTCGATTTGGCCGTGATCACGATGAGAATTTGCTGGAGAATACCAAGGCTTTCTCCTACGACGAATTAAGATTGGCGACGGATAATTTCCATTCGAGTAATAAGATAGGGATAGGAGGTTTTGGAACTGTATACAAGGGGGTCCTGAAAAGTGGAAAGCATGTTGCTATCAAGACACTTGCTGCTCGGTCGAGGCAGGGAGTCCGTGAATTCTTAAACGAGATTAACGCTATCTCAAATGTCCGGCATCCAAACCTTGTTGAGTTGATAGGGTGCTGTGTTCAGGGAGCCGATCGAGTTTTGGTCTATGAATATGTTGAAAATAAAAGCCTTGATCATGCACTATTAGGTCCAACGAGTAGAACCATCCAACTGGATTGGGAAAAAAGATCGGCCATTTGCCTGGGTACTGCCAGGGGTCTTACGTATCTTCACGAAGAACTGGTGCCGCATATTGTACATAGAGATATCAAGGCTAGTAACATACTTTTAGACAGAGATTTTAACCCGAAAATTGGAGACTTTGGGTTGGCTAAACTCTTCCCTGACAACATCACTCATATCAGCACAAGGATTGCAGGAACAACTGGTTATTTGGCACCAGAATATGCATTGGGAGGTCAGTTAACCCTCAAGGCCGACGTTTACAGTTTTGGCGTTCTTATTCTTGAAATAGTAAGCGGCAGAAGCAGTGCCAAGGAAAACTGGGGTGGGACAGAAAAGCTTCTGCTCGAATGGGCATGGCAGCTCCATGAAGAAGGGAGACTATTGGAGCTAGCTGACCCGGAAATGGGAGAGTTTCCCGAGGAAGAAGTCCTTAGGTACATGAAGGTGGCATTTTTCTGCACCCAAGCAGCAGCAAGCCGAAGGCCAAAGATGAGCCAGGTTGTTGACATGCTCTCGAGAAACATCAGAATCAACGAGAAGCAACTTACAGCCCCGGGTTTCTTCAACAACGCAGAGAGCCTAAGCGGGCCTTCGAGTAAAAAATCAGGTTCCGAAACCACTACCTATCAGATGAGTTCTGTCCCCGACACCATAACCCAAGTAACACCTCGCTGA

Protein Analysis

373

Amino Acids

41.15

Weight (kDa)

7.66

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 49 - 252 8.5e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 51 - 319 3.2e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 502, 655
AccI GTMKAC 1 cut(s) 189
AciI CCGC 3 cut(s) 506, 738, 1029
AcoI YGGCCR 2 cut(s) 67, 450
AcsI RAATTY 2 cut(s) 85, 266
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 3 cut(s) 466, 516, 881
AfiI CCNNNNNNNGG 3 cut(s) 572, 847, 848
AgsI TTSAA 3 cut(s) 377, 728, 1009
AjnI CCWGG 3 cut(s) 459, 470, 939
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AluBI AGCT 6 cut(s) 12, 29, 781, 805, 832, 836
AluI AGCT 6 cut(s) 12, 29, 781, 805, 832, 836
Alw26I GTCTC 2 cut(s) 570, 814
Ama87I CYCGRG 3 cut(s) 860, 958, 997
AoxI GGCC 5 cut(s) 67, 450, 693, 926, 1031
ApeKI GCWGC 7 cut(s) 9, 12, 29, 239, 802, 911, 914
ApoI RAATTY 2 cut(s) 85, 266
Asp700I GAANNNNTTC 1 cut(s) 780
AspS9I GGNCC 3 cut(s) 199, 407, 1031
AsuC2I CCSGG 3 cut(s) 842, 998, 999
AsuNHI GCTAGC 1 cut(s) 832
AvaI CYCGRG 3 cut(s) 860, 958, 997
AvaII GGWCC 2 cut(s) 199, 407
AxyI CCTNAGG 1 cut(s) 875
BanI GGYRCC 2 cut(s) 502, 655
BbvI GCAGC 6 cut(s) 16, 21, 226, 814, 923, 926
BccI CCATC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 461, 472, 941
BclI TGATCA 2 cut(s) 73, 391
BcnI CCSGG 3 cut(s) 842, 998, 999
BcoDI GTCTC 2 cut(s) 570, 814
BfaI CTAG 2 cut(s) 534, 833
BisI GCNGC 9 cut(s) 10, 13, 30, 240, 506, 739, 803, 912, 915
BlsI GCNGC 9 cut(s) 11, 14, 31, 241, 507, 740, 804, 913, 916
Bme1390I CCNGG 6 cut(s) 461, 472, 842, 941, 998, 999
Bme18I GGWCC 2 cut(s) 199, 407
BmeT110I CYCGRG 3 cut(s) 860, 958, 997
BmgT120I GGNCC 3 cut(s) 199, 407, 1031
BmiI GGNNCC 5 cut(s) 200, 346, 504, 657, 1054
BmrFI CCNGG 6 cut(s) 461, 472, 842, 941, 998, 999
BmrI ACTGGG 1 cut(s) 772
BmsI GCATC 1 cut(s) 313
BmtI GCTAGC 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 772
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 1025
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 3 cut(s) 842, 998, 999
BsaAI YACGTR 1 cut(s) 483
BsaJI CCNNGG 7 cut(s) 102, 460, 471, 753, 861, 996, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 572, 847, 848
Bse1I ACTGG 4 cut(s) 435, 504, 649, 767
Bse21I CCTNAGG 1 cut(s) 875
BseBI CCWGG 3 cut(s) 461, 472, 941
BseDI CCNNGG 7 cut(s) 102, 460, 471, 753, 861, 996, 997
BseGI GGATG 2 cut(s) 304, 423
BseLI CCNNNNNNNGG 3 cut(s) 572, 847, 848
BseNI ACTGG 4 cut(s) 435, 504, 649, 767
BseXI GCAGC 6 cut(s) 16, 21, 226, 814, 923, 926
BsgI GTGCAG 1 cut(s) 886
Bsh1285I CGRYCG 2 cut(s) 248, 352
BshFI GGCC 5 cut(s) 69, 452, 695, 928, 1033
BshNI GGYRCC 2 cut(s) 502, 655
BsiEI CGRYCG 2 cut(s) 248, 352
BsiHKCI CYCGRG 3 cut(s) 860, 958, 997
BsiSI CCGG 3 cut(s) 301, 842, 998
BslFI GGGAC 2 cut(s) 784, 1070
BslI CCNNNNNNNGG 3 cut(s) 572, 847, 848
BsmAI GTCTC 2 cut(s) 570, 814
BsmFI GGGAC 2 cut(s) 784, 1070
BsnI GGCC 5 cut(s) 69, 452, 695, 928, 1033
BsoBI CYCGRG 3 cut(s) 860, 958, 997
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 4 cut(s) 73, 349, 391, 446
BspACI CCGC 3 cut(s) 506, 738, 1029
BspANI GGCC 5 cut(s) 69, 452, 695, 928, 1033
BspLI GGNNCC 5 cut(s) 200, 346, 504, 657, 1054
BspOI GCTAGC 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 502, 655
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 4 cut(s) 435, 504, 649, 767
BssECI CCNNGG 7 cut(s) 102, 460, 471, 753, 861, 996, 997
BssMI GATC 4 cut(s) 73, 349, 391, 446
BssNAI GTATAC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 102, 753
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 3 cut(s) 461, 472, 941
Bst4CI ACNGT 2 cut(s) 187, 707
Bst6I CTCTTC 1 cut(s) 602
BstAUI TGTACA 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 834, 919, 1031
BstDEI CTNAG 2 cut(s) 875, 1025
BstF5I GGATG 2 cut(s) 304, 423
BstKTI GATC 4 cut(s) 76, 352, 394, 449
BstMAI GTCTC 2 cut(s) 570, 814
BstMBI GATC 4 cut(s) 73, 349, 391, 446
BstMCI CGRYCG 2 cut(s) 248, 352
BstMWI GCNNNNNNNGC 2 cut(s) 29, 744
BstNI CCWGG 3 cut(s) 461, 472, 941
BstNSI RCATGY 2 cut(s) 221, 955
BstSCI CCNGG 6 cut(s) 459, 470, 840, 939, 996, 997
BstSNI TACGTA 1 cut(s) 483
BstV1I GCAGC 6 cut(s) 16, 21, 226, 814, 923, 926
BstXI CCANNNNNNTGG 2 cut(s) 430, 460
BstZ17I GTATAC 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 875
BsuRI GGCC 5 cut(s) 69, 452, 695, 928, 1033
BtsCI GGATG 2 cut(s) 304, 423
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 3 cut(s) 834, 919, 1031
Cfr13I GGNCC 3 cut(s) 199, 407, 1031
Cfr9I CCCGGG 1 cut(s) 997
Csp6I GTAC 3 cut(s) 465, 515, 880
CviAII CATG 6 cut(s) 218, 395, 798, 809, 883, 952
CviQI GTAC 3 cut(s) 465, 515, 880
DdeI CTNAG 2 cut(s) 875, 1025
DpnI GATC 4 cut(s) 75, 351, 393, 448
DpnII GATC 4 cut(s) 73, 349, 391, 446
EaeI YGGCCR 2 cut(s) 67, 450
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
Eco105I TACGTA 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 102, 753
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 199, 407
Eco57I CTGAAG 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 875
Eco88I CYCGRG 3 cut(s) 860, 958, 997
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 3 cut(s) 459, 470, 939
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 102, 753
EcoT22I ATGCAT 1 cut(s) 670
ErhI CCWWGG 2 cut(s) 102, 753
FaeI CATG 6 cut(s) 221, 398, 801, 812, 886, 955
FalI AAGNNNNNCTT 4 cut(s) 858, 890, 1018, 1050
FaqI GGGAC 2 cut(s) 784, 1070
FatI CATG 6 cut(s) 217, 394, 797, 808, 882, 951
FauI CCCGC 1 cut(s) 1022
FbaI TGATCA 2 cut(s) 73, 391
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 9 cut(s) 10, 13, 30, 240, 506, 739, 803, 912, 915
FokI GGATG 2 cut(s) 291, 410
Fsp4HI GCNGC 9 cut(s) 10, 13, 30, 240, 506, 739, 803, 912, 915
FspBI CTAG 2 cut(s) 534, 833
GluI GCNGC 9 cut(s) 10, 13, 30, 240, 506, 739, 803, 912, 915
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 5 cut(s) 69, 452, 695, 928, 1033
HapII CCGG 3 cut(s) 301, 842, 998
Hin1II CATG 6 cut(s) 221, 398, 801, 812, 886, 955
HincII GTYRAC 2 cut(s) 684, 949
HindII GTYRAC 2 cut(s) 684, 949
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 2 cut(s) 258, 972
HpaI GTTAAC 1 cut(s) 684
HpaII CCGG 3 cut(s) 301, 842, 998
Hpy166II GTNNAC 4 cut(s) 190, 684, 703, 949
Hpy188I TCNGA 3 cut(s) 971, 1057, 1074
Hpy188III TCNNGA 9 cut(s) 37, 77, 202, 229, 491, 725, 860, 958, 960
Hpy8I GTNNAC 4 cut(s) 190, 684, 703, 949
Hpy99I CGWCG 3 cut(s) 122, 139, 701
HpyAV CCTTC 4 cut(s) 809, 880, 918, 1044
HpyCH4III ACNGT 2 cut(s) 187, 707
HpyCH4IV ACGT 2 cut(s) 482, 699
HpyCH4V TGCA 5 cut(s) 9, 398, 635, 668, 903
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 744
HpyF3I CTNAG 2 cut(s) 875, 1025
HpySE526I ACGT 2 cut(s) 482, 699
Hsp92II CATG 6 cut(s) 221, 398, 801, 812, 886, 955
Ksp22I TGATCA 2 cut(s) 73, 391
KspAI GTTAAC 1 cut(s) 684
Kzo9I GATC 4 cut(s) 73, 349, 391, 446
LmnI GCTCC 3 cut(s) 344, 810, 829
Lsp1109I GCAGC 6 cut(s) 16, 21, 226, 814, 923, 926
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 534, 833
MaeII ACGT 2 cut(s) 482, 699
MaeIII GTNAC 2 cut(s) 536, 1105
MalI GATC 4 cut(s) 75, 351, 393, 448
MboI GATC 4 cut(s) 73, 349, 391, 446
MboII GAAGA 6 cut(s) 479, 506, 589, 824, 878, 997
MluCI AATT 5 cut(s) 85, 122, 142, 266, 570
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 434, 451
MnlI CCTC 5 cut(s) 167, 243, 668, 698, 856
Mph1103I ATGCAT 1 cut(s) 670
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 5 cut(s) 125, 272, 282, 561, 683
MslI CAYNNNNRTG 1 cut(s) 887
MspA1I CMGCKG 2 cut(s) 12, 29
MspI CCGG 3 cut(s) 301, 842, 998
MspR9I CCNGG 6 cut(s) 461, 472, 842, 941, 998, 999
MvaI CCWGG 3 cut(s) 461, 472, 941
MwoI GCNNNNNNNGC 2 cut(s) 29, 744
NciI CCSGG 3 cut(s) 842, 998, 999
NdeII GATC 4 cut(s) 73, 349, 391, 446
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 6 cut(s) 221, 398, 801, 812, 886, 955
NlaIV GGNNCC 5 cut(s) 200, 346, 504, 657, 1054
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 2 cut(s) 221, 955
PaeR7I CTCGAG 1 cut(s) 958
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 1 cut(s) 972
PkrI GCNGC 9 cut(s) 11, 14, 31, 241, 507, 740, 804, 913, 916
Ple19I CGATCG 1 cut(s) 352
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 483
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 3 cut(s) 459, 470, 939
PspGI CCWGG 3 cut(s) 459, 470, 939
PspN4I GGNNCC 5 cut(s) 200, 346, 504, 657, 1054
PspPI GGNCC 3 cut(s) 199, 407, 1031
PspPPI RGGWCCY 1 cut(s) 199
PvuI CGATCG 1 cut(s) 352
PvuII CAGCTG 2 cut(s) 12, 29
RsaI GTAC 3 cut(s) 466, 516, 881
RsaNI GTAC 3 cut(s) 465, 515, 880
RseI CAYNNNNRTG 1 cut(s) 887
SaqAI TTAA 5 cut(s) 125, 272, 282, 561, 683
SatI GCNGC 9 cut(s) 10, 13, 30, 240, 506, 739, 803, 912, 915
Sau3AI GATC 4 cut(s) 73, 349, 391, 446
Sau96I GGNCC 3 cut(s) 199, 407, 1031
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 6 cut(s) 461, 472, 842, 941, 998, 999
SfaNI GCATC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 958
SinI GGWCC 2 cut(s) 199, 407
SlaI CTCGAG 1 cut(s) 958
SmaI CCCGGG 1 cut(s) 999
SmiMI CAYNNNNRTG 1 cut(s) 887
SmlI CTYRAG 2 cut(s) 689, 958
SmoI CTYRAG 2 cut(s) 689, 958
SnaBI TACGTA 1 cut(s) 483
Sse9I AATT 5 cut(s) 85, 122, 142, 266, 570
SsiI CCGC 3 cut(s) 506, 738, 1029
SspMI CTAG 2 cut(s) 534, 833
StyD4I CCNGG 6 cut(s) 459, 470, 840, 939, 996, 997
StyI CCWWGG 2 cut(s) 102, 753
TaaI ACNGT 2 cut(s) 187, 707
TaiI ACGT 2 cut(s) 485, 702
TaqI TCGA 7 cut(s) 61, 152, 248, 352, 789, 959, 1037
TaqII GACCGA 1 cut(s) 234
TasI AATT 5 cut(s) 85, 122, 142, 266, 570
TatI WGTACW 1 cut(s) 514
TauI GCSGC 2 cut(s) 508, 741
TfiI GAWTC 1 cut(s) 972
Tru1I TTAA 5 cut(s) 125, 272, 282, 561, 683
Tru9I TTAA 5 cut(s) 125, 272, 282, 561, 683
TscAI CASTG 1 cut(s) 754
TseI GCWGC 7 cut(s) 9, 12, 29, 239, 802, 911, 914
TspDTI ATGAA 3 cut(s) 381, 825, 899
TspGWI ACGGA 2 cut(s) 152, 251
TspMI CCCGGG 1 cut(s) 997
TspRI CASTG 1 cut(s) 754
VpaK11BI GGWCC 2 cut(s) 199, 407
XapI RAATTY 2 cut(s) 85, 266
XceI RCATGY 2 cut(s) 221, 955
XhoI CTCGAG 1 cut(s) 958
XmaI CCCGGG 1 cut(s) 997
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 2 cut(s) 534, 833
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.