Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003073.1

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

5397 .. 6128

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003073.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggggacccaaagtgttgagagagtagtgaaccagaggaaattggcaccaccaaagcagtacgaccattctactcagaagaatcctgatgggaagtctttgtcctctgacagcttaggctttggaagaacactttcaaagaaatccttcgatatggctatgagacacatggatataaggcgaagcgtgcaagataacctacatcctgttctgacaaaagttccagcctcctctgtgtacagtgtccggacaagaccaacaaaaagcaagactactaatgctacggattctcctcttgccacatgcagcaatgccagctctgaaccaagtgtcaacaatatttctgcatactttgaaggttgtgaaattgaggacattgatcatggaagtgagaaaggaaactcctctccagcatcccagcaaggcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.59

Weight (kDa)

9.2

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	246
AfaI	GTAC	2 cut(s)	62, 239
AgsI	TTSAA	2 cut(s)	138, 356
AluBI	AGCT	2 cut(s)	114, 318
AluI	AGCT	2 cut(s)	114, 318
Alw26I	GTCTC	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	306
Asp700I	GAANNNNTTC	2 cut(s)	133, 146
AspS9I	GGNCC	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	3 cut(s)	7, 8, 48
BmsI	GCATC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bse3DI	GCAATG	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	246
BseGI	GGATG	2 cut(s)	202, 413
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	3 cut(s)	220, 282, 394
BseXI	GCAGC	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	19
Bsp13I	TCCGGA	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	7, 8, 48
BspMI	ACCTGC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	237
BssMI	GATC	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	188, 316
BstDEI	CTNAG	2 cut(s)	75, 115
BstF5I	GGATG	2 cut(s)	202, 413
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 315
BstNSI	RCATGY	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	202, 413
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	188, 316
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	61, 238
CviAII	CATG	3 cut(s)	169, 303, 383
CviJI	RGCY	5 cut(s)	114, 120, 158, 227, 318
CviKI_1	RGCY	5 cut(s)	114, 120, 158, 227, 318
CviQI	GTAC	2 cut(s)	61, 238
DdeI	CTNAG	2 cut(s)	75, 115
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	6
FaeI	CATG	3 cut(s)	172, 306, 386
FaiI	YATR	7 cut(s)	155, 161, 170, 176, 304, 349, 384
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	168, 302, 382
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	2 cut(s)	189, 400
Fsp4HI	GCNGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	307
GsaI	CCCAGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	393
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	3 cut(s)	172, 306, 386
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	82, 287
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	31, 238, 334
Hpy188I	TCNGA	4 cut(s)	78, 109, 213, 322
Hpy188III	TCNNGA	2 cut(s)	86, 247
Hpy8I	GTNNAC	3 cut(s)	31, 238, 334
HpyAV	CCTTC	2 cut(s)	157, 350
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	190, 306, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 315
HpyF3I	CTNAG	2 cut(s)	75, 115
Hsp92II	CATG	3 cut(s)	172, 306, 386
KflI	GGGWCCC	1 cut(s)	6
Kpn2I	TCCGGA	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LpnPI	CCDG	8 cut(s)	47, 99, 219, 237, 260, 328, 412, 423
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	1 cut(s)	422
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	91, 138
MluCI	AATT	2 cut(s)	41, 366
MnlI	CCTC	7 cut(s)	30, 115, 238, 241, 303, 364, 415
MroI	TCCGGA	1 cut(s)	246
MroXI	GAANNNNTTC	2 cut(s)	133, 146
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	187, 315
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	172, 306, 386
NlaIV	GGNNCC	3 cut(s)	7, 8, 48
NspI	RCATGY	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	417
PdmI	GAANNNNTTC	2 cut(s)	133, 146
PfeI	GAWTC	2 cut(s)	82, 287
PkrI	GCNGC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	7, 8, 48
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	62, 239
RsaNI	GTAC	2 cut(s)	61, 238
RseI	CAYNNNNRTG	1 cut(s)	387
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	6
SetI	ASST	5 cut(s)	116, 201, 320, 361, 431
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	2 cut(s)	41, 366
SspI	AATATT	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	41, 366
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	82, 287
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	306
XmnI	GAANNNNTTC	2 cut(s)	133, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.