Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

59079962 .. 59080237

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCTTTGTGAAGGCGATATCAGAGCTGCCAAGCTCTCTCTAGAGAAGGACGGCGTTGCTCTTCCCAATTACTCCGACTCTACCAGAGTTGCTTATGTTCTTCAAGGTAATGGAGTAGTCGGAATTGTTCTGCCGAAGAAGGAAGAAAAGGTTCTTCCAGTGAATAAGGGTGATGCTATTTCCCTCCCTTTTGGAGTTATCACTTTGTGGCACAACAAGGAGGAAACTGAGTTTGTGGTTCTTTTATTGGGTGAAACCAAAACAGCTCACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

91

Amino Acids

9.9

Weight (kDa)

6.08

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	6 - 86	1.4e-13	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	3 cut(s)	26, 34, 266
AluI	AGCT	3 cut(s)	26, 34, 266
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	182, 263
BbvI	GCAGC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	165
CviJI	RGCY	3 cut(s)	26, 34, 266
CviKI_1	RGCY	3 cut(s)	26, 34, 266
DdeI	CTNAG	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	19
FaiI	YATR	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	2 cut(s)	182, 263
Hpy188I	TCNGA	3 cut(s)	23, 76, 122
Hpy188III	TCNNGA	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	5, 40, 133
HpyF3I	CTNAG	1 cut(s)	228
LguI	GCTCTTC	1 cut(s)	66
LpnPI	CCDG	2 cut(s)	97, 171
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	41
MboII	GAAGA	5 cut(s)	53, 92, 146, 148, 155
MluCI	AATT	2 cut(s)	67, 123
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	99, 100
MnlI	CCTC	2 cut(s)	194, 214
MroXI	GAANNNNTTC	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	71
SetI	ASST	5 cut(s)	28, 36, 109, 153, 268
SfaNI	GCATC	1 cut(s)	163
SgeI	CNNG	6 cut(s)	43, 53, 96, 116, 170, 229
Sse9I	AATT	2 cut(s)	67, 123
SspMI	CTAG	1 cut(s)	41
TasI	AATT	2 cut(s)	67, 123
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.