Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Forward (+)

10353917 .. 10356954

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTTCTCCAGACTTGGAAACTGAAAGAAGAAGAAAGGCTTATAGAAATTGTTGATCCAGAGTTGACTGCATATCCAGAGGCTGAGGTAATGCGCTTCATTAAGGTTGCGCTCTTTTGTACTCAAGAAGCTTCGCATCAAAGGCCGGCCATGAAGCAAGTAGTGGAAATGCTTTCCAAAGAGGTACAGCTAAATGAGAAGCTACTAGTAGAACCAAGGCCAAGGAGGTATGCACCTCAACATGGAGGTGGTGCCAGTGGGGAGGGAACATCATCTTCTCAGTCAGATAAAGATAAACGCGGGAAATCATTGGCAAATCCTGATGTAACTTCCACCCAGTCGTATATATATGAATCTCAAACGCAAATGTTTCCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.36

Weight (kDa)

6.14

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	300
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	2 cut(s)	121, 186
AfiI	CCNNNNNNNGG	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	3 cut(s)	131, 190, 202
AluI	AGCT	3 cut(s)	131, 190, 202
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	143, 147, 218
AspLEI	GCGC	2 cut(s)	96, 112
BanI	GGYRCC	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	215, 221, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	255, 337
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	215, 221, 374
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	75, 293
BseNI	ACTGG	2 cut(s)	255, 337
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	145, 149, 220
BshNI	GGYRCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	242
BsnI	GGCC	3 cut(s)	145, 149, 220
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	3 cut(s)	145, 149, 220
BspCNI	CTCAG	2 cut(s)	76, 292
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	255, 337
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	215, 221, 374
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	215, 221
Bst2UI	CCWGG	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	84, 279
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	96, 112
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstUI	CGCG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	145, 149, 220
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	2 cut(s)	96, 112
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	120, 185
CviAII	CATG	2 cut(s)	151, 242
CviJI	RGCY	8 cut(s)	40, 83, 131, 145, 149, 190, 202, 220
CviKI_1	RGCY	8 cut(s)	40, 83, 131, 145, 149, 190, 202, 220
CviQI	GTAC	2 cut(s)	120, 185
DdeI	CTNAG	2 cut(s)	84, 279
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	215, 221
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	215, 221
ErhI	CCWWGG	2 cut(s)	215, 221
FaeI	CATG	2 cut(s)	154, 245
FaiI	YATR	9 cut(s)	44, 73, 152, 231, 243, 345, 347, 349, 351
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	2 cut(s)	150, 241
FauI	CCCGC	1 cut(s)	293
FseI	GGCCGGCC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	2 cut(s)	95, 111
HaeIII	GGCC	3 cut(s)	145, 149, 220
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	2 cut(s)	96, 112
Hin1II	CATG	2 cut(s)	154, 245
Hin6I	GCGC	2 cut(s)	94, 110
HinP1I	GCGC	2 cut(s)	94, 110
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	5 cut(s)	10, 59, 77, 125, 320
Hpy8I	GTNNAC	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	71, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	84, 279
Hsp92II	CATG	2 cut(s)	154, 245
HspAI	GCGC	2 cut(s)	94, 110
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	23, 72, 90, 159, 268, 333, 350, 361
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	41, 44, 267
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	7 cut(s)	73, 79, 175, 219, 239, 246, 256
MroNI	GCCGGC	1 cut(s)	145
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	55
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	154, 245
NlaIV	GGNNCC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	83
RigI	GGCCGGCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	121, 186
RsaNI	GTAC	2 cut(s)	120, 185
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	2 cut(s)	215, 221
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	88, 167, 366
TspRI	CASTG	1 cut(s)	262
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.