Rh3BG125800

Flocculation protein FLO11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000913
Physical Location & Seq
Forward (+)
10349208 .. 10353338
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG125800.1

Sequence Viewer

Length: 1131 bp
ATGTTGTCCAGGCTAATTACTCCACCTGCTACCCCACTATTTCCATCCTTGGAGATGGAACCGCAAAAGACTTCAGTTAGTCAGATTGAGGAACCTAATGCGCGTGATTCTGCTCCTCCAAAATCTAGGCTAGCAAACACAAAGTTAGAGGCTGCTTCAGACAGCAAAATAGCATCTAAGCAGTCAACATTGCCATCACGACCGAATTCTTCCAGTACTAGTAACAGGAGGCCCTCACCATCAAGAGGGCCAACAGCTGCTCCTCGTAGATCTGCAACACCAACTGGACGGCCCACCACATTACCTTCATCAACCAAGCCATCAAGGTCCTCCACACCCAATTCACGAACCACCTTACCATCTGCTAAGCCAGTGGCTCCTCCAGTGAGGTCCTCAACTCCTTCTAGATCCACCGTGCGTTCTTCAACACCAACTGGCAGATCTTCTGTCCCAGCTTCTAAGACAACATCAAGATCAGCAACACCAACTCGCCTACCAAGTTCATCAAGTACACCTGCACTGTCTGCTCCTCGTGGCCGTTCTTCTTCAGTATCAAAGTCAGCTCCCCCAAGTTCGAAAAATCCTGCGCCATCACGTGGAAGTTCTCCAACAGTAAAATCTAGGTCCTCGAAATCCTCAGATATGACTGCTTTCTCACTTGATGCTCCACCAAATTTGAGAACCACTTTGCCACAAAGGCCAAATTCAGCCTCTAGGGCTCGTCCTGGGGCACCAAGTGTTAGATCATCTTCTGTTGGAGCTGTTTCTAGTGGAAAACCTAGACAGCAATCATGTTCACCTTCTAGAGGAAGGGCTTCACATGGCATTGCCAGTACTAATGGGTACTCTCGTCAAGTCACAAGTAAATCATCTCCCAATGACAGTGATGATGTAAATCCTGTACTTATGGGGACCCAAAGTGTTGAGAGAGTAGTGAACCAGAGGAAATTGGCACCACCAAAGCAGTACGACCATTCTACTCAGAAGAATCCTGATGGGAAGTCTTTGTCCTCTGACAGCTTAGGCTTTGGAAGAACACTTTCAAAGAAATCCTTCGATATGGCTATGAGACACATGGTATGCATTATTTTTCTTATTCAACAGCATATTTTTCACTTGATGCATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

39.65

Weight (kDa)

11.79

Isoelectric Point (pI)

81.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 523
Acc36I ACCTGC 2 cut(s) 34, 523
AccB1I GGYRCC 2 cut(s) 730, 952
AccB7I CCANNNNNTGG 1 cut(s) 596
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 3 cut(s) 205, 673, 703
AcuI CTGAAG 3 cut(s) 57, 141, 531
AcvI CACGTG 1 cut(s) 596
AdeI CACNNNGTG 1 cut(s) 737
AfaI GTAC 6 cut(s) 217, 511, 835, 845, 903, 968
AfiI CCNNNNNNNGG 3 cut(s) 245, 596, 806
AgsI TTSAA 3 cut(s) 426, 1044, 1100
AhlI ACTAGT 1 cut(s) 218
AjnI CCWGG 2 cut(s) 8, 724
AluBI AGCT 5 cut(s) 257, 455, 563, 761, 1020
AluI AGCT 5 cut(s) 257, 455, 563, 761, 1020
Alw26I GTCTC 1 cut(s) 1063
AlwI GGATC 1 cut(s) 402
AoxI GGCC 5 cut(s) 230, 248, 290, 535, 698
ApeKI GCWGC 2 cut(s) 152, 257
ApoI RAATTY 3 cut(s) 205, 673, 703
Asp700I GAANNNNTTC 3 cut(s) 814, 1039, 1052
AspLEI GCGC 2 cut(s) 103, 589
AspS9I GGNCC 7 cut(s) 231, 248, 291, 327, 390, 624, 912
AsuHPI GGTGA 2 cut(s) 228, 789
AsuII TTCGAA 1 cut(s) 575
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 4 cut(s) 327, 390, 624, 912
BaeGI GKGCMC 1 cut(s) 733
BaeI ACNNNNGTAYC 2 cut(s) 835, 868
BanI GGYRCC 2 cut(s) 730, 952
BanII GRGCYC 1 cut(s) 721
BauI CACGAG 1 cut(s) 531
BbrPI CACGTG 1 cut(s) 596
BbvI GCAGC 2 cut(s) 139, 244
BccI CCATC 8 cut(s) 49, 52, 202, 247, 328, 367, 598, 989
BceAI ACGGC 2 cut(s) 305, 522
BciT130I CCWGG 2 cut(s) 10, 726
BcoDI GTCTC 1 cut(s) 1063
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 9 cut(s) 126, 131, 219, 405, 621, 714, 768, 780, 804
BfuAI ACCTGC 2 cut(s) 34, 523
BglI GCCNNNNNGGC 2 cut(s) 697, 716
BglII AGATCT 2 cut(s) 269, 440
BisI GCNGC 2 cut(s) 153, 258
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 2 cut(s) 154, 259
BmcAI AGTACT 2 cut(s) 217, 835
Bme1390I CCNGG 2 cut(s) 10, 726
Bme18I GGWCC 4 cut(s) 327, 390, 624, 912
BmgT120I GGNCC 7 cut(s) 231, 248, 291, 327, 390, 624, 912
BmiI GGNNCC 7 cut(s) 60, 93, 378, 732, 913, 914, 954
BmrFI CCNGG 2 cut(s) 10, 726
BmsI GCATC 3 cut(s) 182, 652, 1110
BmtI GCTAGC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 1021
Bpu1102I GCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 575
BsaAI YACGTR 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 2 cut(s) 48, 725
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 596, 806
Bse1I ACTGG 6 cut(s) 213, 289, 371, 383, 439, 831
Bse3DI GCAATG 2 cut(s) 188, 825
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 2 cut(s) 10, 726
BseDI CCNNGG 2 cut(s) 48, 725
BseGI GGATG 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 3 cut(s) 245, 596, 806
BseMI GCAATG 2 cut(s) 188, 825
BseMII CTCAG 2 cut(s) 651, 995
BseNI ACTGG 6 cut(s) 213, 289, 371, 383, 439, 831
BseRI GAGGAG 4 cut(s) 105, 252, 369, 519
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 2 cut(s) 139, 244
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 5 cut(s) 232, 250, 292, 537, 700
BshNI GGYRCC 2 cut(s) 730, 952
BsiEI CGRYCG 1 cut(s) 203
BslFI GGGAC 2 cut(s) 434, 925
BslI CCNNNNNNNGG 3 cut(s) 245, 596, 806
BsmAI GTCTC 1 cut(s) 1063
BsmFI GGGAC 2 cut(s) 434, 925
BsnI GGCC 5 cut(s) 232, 250, 292, 537, 700
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 721, 733
Bsp143I GATC 5 cut(s) 269, 407, 440, 473, 743
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 1 cut(s) 62
BspANI GGCC 5 cut(s) 232, 250, 292, 537, 700
BspCNI CTCAG 2 cut(s) 650, 994
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 7 cut(s) 60, 93, 378, 732, 913, 914, 954
BspMI ACCTGC 2 cut(s) 34, 523
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 2 cut(s) 730, 952
BsrDI GCAATG 2 cut(s) 188, 825
BsrI ACTGG 6 cut(s) 213, 289, 371, 383, 439, 831
BssECI CCNNGG 2 cut(s) 48, 725
BssMI GATC 5 cut(s) 269, 407, 440, 473, 743
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 10, 726
Bst4CI ACNGT 4 cut(s) 415, 522, 613, 884
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 6 cut(s) 177, 366, 459, 637, 981, 1021
BstENI CCTNNNNNAGG 1 cut(s) 804
BstF5I GGATG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 2 cut(s) 103, 589
BstKTI GATC 5 cut(s) 272, 410, 443, 476, 746
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 5 cut(s) 269, 407, 440, 473, 743
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 3 cut(s) 524, 697, 716
BstNI CCWGG 2 cut(s) 10, 726
BstSCI CCNGG 2 cut(s) 8, 724
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 139, 244
BstX2I RGATCY 3 cut(s) 269, 407, 440
BstYI RGATCY 3 cut(s) 269, 407, 440
BsuRI GGCC 5 cut(s) 232, 250, 292, 537, 700
BtsCI GGATG 1 cut(s) 44
BtsIMutI CAGTG 4 cut(s) 378, 390, 518, 889
BveI ACCTGC 2 cut(s) 34, 523
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 2 cut(s) 103, 589
Cfr13I GGNCC 7 cut(s) 231, 248, 291, 327, 390, 624, 912
Csp6I GTAC 6 cut(s) 216, 510, 834, 844, 902, 967
CspCI CAANNNNNGTGG 2 cut(s) 657, 692
CviAII CATG 3 cut(s) 792, 821, 1075
CviQI GTAC 6 cut(s) 216, 510, 834, 844, 902, 967
DdeI CTNAG 6 cut(s) 177, 366, 459, 637, 981, 1021
DpnI GATC 5 cut(s) 271, 409, 442, 475, 745
DpnII GATC 5 cut(s) 269, 407, 440, 473, 743
DraIII CACNNNGTG 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 4 cut(s) 327, 390, 624, 912
Eco57I CTGAAG 3 cut(s) 57, 141, 531
Eco72I CACGTG 1 cut(s) 596
EcoNI CCTNNNNNAGG 1 cut(s) 804
EcoO109I RGGNCCY 5 cut(s) 231, 327, 390, 624, 912
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 8, 724
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 2 cut(s) 1085, 1125
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 795, 824, 1078
FalI AAGNNNNNCTT 2 cut(s) 1037, 1069
FaqI GGGAC 2 cut(s) 434, 925
FatI CATG 3 cut(s) 791, 820, 1074
Fnu4HI GCNGC 2 cut(s) 153, 258
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 2 cut(s) 153, 258
FspBI CTAG 9 cut(s) 126, 131, 219, 405, 621, 714, 768, 780, 804
GlaI GCGC 2 cut(s) 102, 588
GluI GCNGC 2 cut(s) 153, 258
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 5 cut(s) 232, 250, 292, 537, 700
HhaI GCGC 2 cut(s) 103, 589
Hin1II CATG 3 cut(s) 795, 824, 1078
Hin6I GCGC 2 cut(s) 101, 587
HinP1I GCGC 2 cut(s) 101, 587
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 2 cut(s) 107, 988
HphI GGTGA 2 cut(s) 228, 789
Hpy166II GTNNAC 4 cut(s) 186, 512, 797, 937
Hpy188I TCNGA 5 cut(s) 84, 160, 640, 984, 1015
Hpy188III TCNNGA 7 cut(s) 198, 243, 345, 405, 471, 804, 992
Hpy8I GTNNAC 4 cut(s) 186, 512, 797, 937
HpyAV CCTTC 5 cut(s) 315, 411, 804, 810, 1063
HpyCH4III ACNGT 4 cut(s) 415, 522, 613, 884
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 275, 518, 1083, 1123
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 697, 716
HpyF3I CTNAG 6 cut(s) 177, 366, 459, 637, 981, 1021
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 3 cut(s) 795, 824, 1078
HspAI GCGC 2 cut(s) 101, 587
KflI GGGWCCC 1 cut(s) 912
Kzo9I GATC 5 cut(s) 269, 407, 440, 473, 743
LmnI GCTCC 7 cut(s) 118, 265, 382, 532, 568, 670, 758
Lsp1109I GCAGC 2 cut(s) 139, 244
LweI GCATC 3 cut(s) 182, 652, 1110
MaeI CTAG 9 cut(s) 126, 131, 219, 405, 621, 714, 768, 780, 804
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 2 cut(s) 221, 856
MalI GATC 5 cut(s) 271, 409, 442, 475, 745
MboI GATC 5 cut(s) 269, 407, 440, 473, 743
MboII GAAGA 8 cut(s) 201, 414, 435, 534, 537, 741, 997, 1044
MflI RGATCY 3 cut(s) 269, 407, 440
MhlI GDGCHC 2 cut(s) 721, 733
MluCI AATT 6 cut(s) 15, 205, 340, 673, 703, 947
MmeI TCCRAC 2 cut(s) 632, 736
Mph1103I ATGCAT 2 cut(s) 1085, 1125
MroXI GAANNNNTTC 3 cut(s) 814, 1039, 1052
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 10, 726
MvaI CCWGG 2 cut(s) 10, 726
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 524, 697, 716
NdeII GATC 5 cut(s) 269, 407, 440, 473, 743
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 795, 824, 1078
NlaIV GGNNCC 7 cut(s) 60, 93, 378, 732, 913, 914, 954
NmuCI GTSAC 1 cut(s) 856
NsiI ATGCAT 2 cut(s) 1085, 1125
NspV TTCGAA 1 cut(s) 575
PaqCI CACCTGC 2 cut(s) 34, 523
PdmI GAANNNNTTC 3 cut(s) 814, 1039, 1052
PfeI GAWTC 2 cut(s) 107, 988
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 2 cut(s) 154, 259
PmaCI CACGTG 1 cut(s) 596
PmlI CACGTG 1 cut(s) 596
Ppu21I YACGTR 1 cut(s) 596
PpuMI RGGWCCY 4 cut(s) 327, 390, 624, 912
Psp5II RGGWCCY 4 cut(s) 327, 390, 624, 912
Psp6I CCWGG 2 cut(s) 8, 724
PspCI CACGTG 1 cut(s) 596
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 2 cut(s) 8, 724
PspN4I GGNNCC 7 cut(s) 60, 93, 378, 732, 913, 914, 954
PspPI GGNCC 7 cut(s) 231, 248, 291, 327, 390, 624, 912
PspPPI RGGWCCY 4 cut(s) 327, 390, 624, 912
PsuI RGATCY 3 cut(s) 269, 407, 440
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 6 cut(s) 217, 511, 835, 845, 903, 968
RsaNI GTAC 6 cut(s) 216, 510, 834, 844, 902, 967
SatI GCNGC 2 cut(s) 153, 258
Sau3AI GATC 5 cut(s) 269, 407, 440, 473, 743
Sau96I GGNCC 7 cut(s) 231, 248, 291, 327, 390, 624, 912
ScaI AGTACT 2 cut(s) 217, 835
ScrFI CCNGG 2 cut(s) 10, 726
SduI GDGCHC 2 cut(s) 721, 733
SfaNI GCATC 3 cut(s) 182, 652, 1110
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 4 cut(s) 327, 390, 624, 912
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 6 cut(s) 15, 205, 340, 673, 703, 947
SsiI CCGC 1 cut(s) 62
SspMI CTAG 9 cut(s) 126, 131, 219, 405, 621, 714, 768, 780, 804
StyD4I CCNGG 2 cut(s) 8, 724
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 4 cut(s) 415, 522, 613, 884
TaiI ACGT 1 cut(s) 598
TaqI TCGA 3 cut(s) 575, 629, 1056
TaqII GACCGA 1 cut(s) 217
TasI AATT 6 cut(s) 15, 205, 340, 673, 703, 947
TatI WGTACW 4 cut(s) 215, 509, 833, 901
TfiI GAWTC 2 cut(s) 107, 988
TscAI CASTG 4 cut(s) 378, 390, 525, 889
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 2 cut(s) 152, 257
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 2 cut(s) 297, 492
TspRI CASTG 4 cut(s) 378, 390, 525, 889
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 4 cut(s) 327, 390, 624, 912
XagI CCTNNNNNAGG 1 cut(s) 804
XapI RAATTY 3 cut(s) 205, 673, 703
XbaI TCTAGA 2 cut(s) 404, 803
XmnI GAANNNNTTC 3 cut(s) 814, 1039, 1052
XspI CTAG 9 cut(s) 126, 131, 219, 405, 621, 714, 768, 780, 804
ZrmI AGTACT 2 cut(s) 217, 835
Zsp2I ATGCAT 2 cut(s) 1085, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.