FvH4_6g11600
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000913
Physical Location & Seq
Forward (+)
6950382 .. 6954697
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11600.t4

Sequence Viewer

Length: 1149 bp
ATGGTTTATAGTTGCTTTGGTCTGCTCAATTGTTGCAAAGAAGACACGAATTTGGAACCTTCCAGCCAAGCCCAAGGGATTCCCACCAACAATGTAAGGCTCTTTTCTTATAATTCATTGAGGTCAGCGACGAGGAATTTTCACCCTTCAAACAAAATAGGTGGAGGAGGCTATGGAGTTGTCTATAAGGGAGTTTTAAGAGATGACACACAAGTTGCGATCAAGTGTCTTTCTTCAGACTCGAGACAAGGAGTAAATGAATTTTTGACAGAGATCAACACGATATCAAGAATACGACACCCCAACCTTGTTGAGCTTATTGGCTGTTGCGTGGAGGACAATCACCGAATATTGGTATATGAATATCTGGAAAACAACAGTCTTGCAAGTTCTTTGCTTGGTTTAAGAAGTCATGTTTCACTAGATTGGCCCCAGAGAGTAGTGATTTGCTTGGGTACAGCTACTGGTCTTGCATTTCTTCATGACGAAGCTGAACCACATATTGTGCACAGAGACATCAAGGCTAGCAATATACTTCTTGGTGCAAACTATTGTCCTAAAATTGGAGATTTTGGGCTGGCAAAACTTTTTCCTGATAATGTCACTCATCTTAGTACTAGAGTGGCAGGAACTGTTGGATATCTAGCCCCGGAATATGCACTTTTTGGACAGCTTACAAAGAAAGCAGATGTGTACAGCTTTGGGGTTCTTTTGCTTGAAGTAATTAGTGGCAGAAGTAGTAGTAAGGCAGCCTTTGGTGACCAAATGCTGCTTTTGCTGGAATGGACATGGAAACTGAGAGAAGAAGAAAGGCTTTTAGAAATTGTTGATCCAGAATTGACTGCATATCCAGAGGCTGAGGTTTTGCGCTTCATCAAGGTTGCGCTCTTTTGTACTCAAGAAGCCTCGCAACAAAGGCCGGGAATGAAGCAAGTAGTGGAAATGCTTTCCAAAGAGGTAGAGCTAAATGAGAAGCTACTAGTTGAACCAAGGCCAAGACGGTATGCACCTCAACGTGTAGGTGGTGCCAATTGGGACGGAGAATCCTCTTCTCAGTCAGATAAACAAAGGAAATCATCGGCAAATCCTGATGTAACTTCCACACCCTCGTATATAAATGAACCTCAGACACAAATGTTTCCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

383

Amino Acids

42.59

Weight (kDa)

6.11

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 48 - 249 8.9e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 50 - 248 8.9e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 1025
AclWI GGATC 1 cut(s) 824
AcsI RAATTY 3 cut(s) 49, 136, 260
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 4 cut(s) 457, 616, 695, 895
AfiI CCNNNNNNNGG 2 cut(s) 352, 563
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 3 cut(s) 150, 719, 986
AhlI ACTAGT 1 cut(s) 979
AluBI AGCT 7 cut(s) 316, 461, 491, 673, 699, 964, 976
AluI AGCT 7 cut(s) 316, 461, 491, 673, 699, 964, 976
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 238, 507
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 824
AlwNI CAGNNNCTG 3 cut(s) 464, 632, 857
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 3 cut(s) 428, 917, 992
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 2 cut(s) 749, 769
ApoI RAATTY 3 cut(s) 49, 136, 260
AspLEI GCGC 2 cut(s) 870, 886
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 2 cut(s) 650, 921
AsuHPI GGTGA 3 cut(s) 134, 335, 770
AsuNHI GCTAGC 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 1025
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 510
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 2 cut(s) 756, 761
BcnI CCSGG 2 cut(s) 650, 921
BcoDI GTCTC 2 cut(s) 238, 507
BcuI ACTAGT 1 cut(s) 979
BfaI CTAG 5 cut(s) 422, 525, 618, 644, 980
BisI GCNGC 2 cut(s) 750, 770
BlsI GCNGC 2 cut(s) 751, 771
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 2 cut(s) 650, 921
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 3 cut(s) 57, 431, 1027
BmrFI CCNGG 2 cut(s) 650, 921
BmtI GCTAGC 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 882
BpuMI CCSGG 2 cut(s) 650, 921
BsaJI CCNNGG 3 cut(s) 73, 648, 989
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 563
Bse1I ACTGG 1 cut(s) 469
BseDI CCNNGG 3 cut(s) 73, 648, 989
BseLI CCNNNNNNNGG 2 cut(s) 352, 563
BseMII CTCAG 4 cut(s) 788, 849, 1067, 1139
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 2 cut(s) 756, 761
BshFI GGCC 3 cut(s) 430, 919, 994
BshNI GGYRCC 1 cut(s) 1025
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 2 cut(s) 650, 920
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 2 cut(s) 352, 563
BsmAI GTCTC 2 cut(s) 238, 507
BsmFI GGGAC 1 cut(s) 1049
BsnI GGCC 3 cut(s) 430, 919, 994
BsoBI CYCGRG 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 510
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 3 cut(s) 219, 273, 829
BspANI GGCC 3 cut(s) 430, 919, 994
BspCNI CTCAG 4 cut(s) 789, 850, 1066, 1138
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 3 cut(s) 57, 431, 1027
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 1025
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 3 cut(s) 73, 648, 989
BssMI GATC 3 cut(s) 219, 273, 829
BssT1I CCWWGG 2 cut(s) 73, 989
Bst4CI ACNGT 3 cut(s) 380, 634, 1002
Bst6I CTCTTC 1 cut(s) 1054
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 526, 579
BstDEI CTNAG 5 cut(s) 611, 797, 858, 1053, 1125
BstEII GGTNACC 1 cut(s) 758
BstHHI GCGC 2 cut(s) 870, 886
BstKTI GATC 3 cut(s) 222, 276, 832
BstMAI GTCTC 2 cut(s) 238, 507
BstMBI GATC 3 cut(s) 219, 273, 829
BstMWI GCNNNNNNNGC 2 cut(s) 775, 916
BstPI GGTNACC 1 cut(s) 758
BstSCI CCNGG 2 cut(s) 648, 919
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 756, 761
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 430, 919, 994
Cac8I GCNNGC 2 cut(s) 526, 579
CaiI CAGNNNCTG 3 cut(s) 464, 632, 857
CciI TCATGA 1 cut(s) 481
CfoI GCGC 2 cut(s) 870, 886
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 4 cut(s) 456, 615, 694, 894
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 3 cut(s) 413, 482, 789
CviQI GTAC 4 cut(s) 456, 615, 694, 894
DdeI CTNAG 5 cut(s) 611, 797, 858, 1053, 1125
DpnI GATC 3 cut(s) 221, 275, 831
DpnII GATC 3 cut(s) 219, 273, 829
Eam1104I CTCTTC 1 cut(s) 1054
EarI CTCTTC 1 cut(s) 1054
Eco130I CCWWGG 2 cut(s) 73, 989
Eco32I GATATC 2 cut(s) 285, 641
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 758
EcoO65I GGTNACC 1 cut(s) 758
EcoRV GATATC 2 cut(s) 285, 641
EcoT14I CCWWGG 2 cut(s) 73, 989
ErhI CCWWGG 2 cut(s) 73, 989
FaeI CATG 3 cut(s) 416, 485, 792
FalI AAGNNNNNCTT 4 cut(s) 737, 769, 798, 830
FaqI GGGAC 1 cut(s) 1049
FatI CATG 3 cut(s) 412, 481, 788
Fnu4HI GCNGC 2 cut(s) 750, 770
Fsp4HI GCNGC 2 cut(s) 750, 770
FspBI CTAG 5 cut(s) 422, 525, 618, 644, 980
GlaI GCGC 2 cut(s) 869, 885
GluI GCNGC 2 cut(s) 750, 770
HaeIII GGCC 3 cut(s) 430, 919, 994
HapII CCGG 2 cut(s) 650, 920
HhaI GCGC 2 cut(s) 870, 886
Hin1II CATG 3 cut(s) 416, 485, 792
Hin6I GCGC 2 cut(s) 868, 884
HinP1I GCGC 2 cut(s) 868, 884
HinfI GANTC 3 cut(s) 79, 239, 1043
HpaII CCGG 2 cut(s) 650, 920
HphI GGTGA 3 cut(s) 134, 335, 770
Hpy166II GTNNAC 2 cut(s) 508, 694
Hpy188I TCNGA 3 cut(s) 238, 1060, 1128
Hpy188III TCNNGA 9 cut(s) 243, 288, 368, 482, 593, 833, 851, 899, 1088
Hpy8I GTNNAC 2 cut(s) 508, 694
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 69, 156
HpyCH4III ACNGT 3 cut(s) 380, 634, 1002
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 8 cut(s) 36, 386, 473, 508, 545, 659, 845, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 775, 916
HpyF3I CTNAG 5 cut(s) 611, 797, 858, 1053, 1125
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 3 cut(s) 416, 485, 792
HspAI GCGC 2 cut(s) 868, 884
Kzo9I GATC 3 cut(s) 219, 273, 829
Lsp1109I GCAGC 2 cut(s) 756, 761
MaeI CTAG 5 cut(s) 422, 525, 618, 644, 980
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 3 cut(s) 601, 758, 1093
MalI GATC 3 cut(s) 221, 275, 831
MboI GATC 3 cut(s) 219, 273, 829
MboII GAAGA 6 cut(s) 53, 225, 470, 815, 818, 1041
MfeI CAATTG 2 cut(s) 28, 1030
MhlI GDGCHC 1 cut(s) 510
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 616
MseI TTAA 2 cut(s) 197, 404
MspI CCGG 2 cut(s) 650, 920
MspR9I CCNGG 2 cut(s) 650, 921
MunI CAATTG 2 cut(s) 28, 1030
MwoI GCNNNNNNNGC 2 cut(s) 775, 916
NciI CCSGG 2 cut(s) 650, 921
NdeII GATC 3 cut(s) 219, 273, 829
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 3 cut(s) 416, 485, 792
NlaIV GGNNCC 3 cut(s) 57, 431, 1027
NmuCI GTSAC 2 cut(s) 601, 758
PaeR7I CTCGAG 1 cut(s) 241
PagI TCATGA 1 cut(s) 481
PfeI GAWTC 2 cut(s) 79, 1043
PkrI GCNGC 2 cut(s) 751, 771
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PsiI TTATAA 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 758
PspN4I GGNNCC 3 cut(s) 57, 431, 1027
PspPI GGNCC 1 cut(s) 429
PstNI CAGNNNCTG 3 cut(s) 464, 632, 857
RsaI GTAC 4 cut(s) 457, 616, 695, 895
RsaNI GTAC 4 cut(s) 456, 615, 694, 894
SaqAI TTAA 2 cut(s) 197, 404
SatI GCNGC 2 cut(s) 750, 770
Sau3AI GATC 3 cut(s) 219, 273, 829
Sau96I GGNCC 1 cut(s) 429
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 650, 921
SduI GDGCHC 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 241, 897
SmoI CTYRAG 2 cut(s) 241, 897
SpeI ACTAGT 1 cut(s) 979
SspI AATATT 1 cut(s) 351
SspMI CTAG 5 cut(s) 422, 525, 618, 644, 980
StyD4I CCNGG 2 cut(s) 648, 919
StyI CCWWGG 2 cut(s) 73, 989
TaaI ACNGT 3 cut(s) 380, 634, 1002
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 1 cut(s) 242
TatI WGTACW 3 cut(s) 614, 693, 893
TfiI GAWTC 2 cut(s) 79, 1043
Tru1I TTAA 2 cut(s) 197, 404
Tru9I TTAA 2 cut(s) 197, 404
TseFI GTSAC 2 cut(s) 601, 758
TseI GCWGC 2 cut(s) 749, 769
Tsp45I GTSAC 2 cut(s) 601, 758
TspDTI ATGAA 7 cut(s) 105, 273, 375, 470, 862, 941, 1134
TspGWI ACGGA 1 cut(s) 1053
VneI GTGCAC 1 cut(s) 506
XapI RAATTY 3 cut(s) 49, 136, 260
XhoI CTCGAG 1 cut(s) 241
XspI CTAG 5 cut(s) 422, 525, 618, 644, 980
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.