FvH4_3g08430

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001932
Physical Location & Seq
Forward (+)
4920696 .. 4922681
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08430.t1

Sequence Viewer

Length: 702 bp
ATGGATTTTAAGAAGGAATACTTGGATGCTGTTTTGGTCCCAGCTGGGCTGCTGTTCATGTTTCTTTACCACCTCTTCCTCCTCTCCCGATACCTCCATGACCCTATCAAAACATCCATCGGTTACGAAAACAAAGACAAAGAAACTTGGGTTGAAAAGATTCTGAAGGTCCCTGAGGATGCTAATGATGTTGCAGTGAAAGACAAAGTTAGCGCAGGACTTGGTGTGATTTCCTCAAACACAACTGCAACCATGACCTTAGCATCAATCTCCTTAACTCTCAGCACATTAATCGGAGGCTGGATTGCAAGTTCCACCAACAACTTGGTGCCGCTAGAAATTGTTTACGGCAACATAAGCGAGTCAATCATCTCTATCAAGTACCTATGCCTGTTGAGCTGCCTTCTCCTTGCTTTCTCGTTCTTCGTTCAATCTGCAAGGCACTTTATCCATTCAAACTACCTGTTGAGCACTCCGGGAGCCACAAAGGAAGAGGATGTGGAGAAAGTGCAGACAGCGGTCGAAAGAGGCAGTATCTTTTGGTCCTTGGGACTCAGATCACTATATTTTGGTCTTAATTTTTTGCTGTGGTTCTTCGGGCCTATTCCAATGTGTGCTTGCTCTATTGTAATGGTATTCGTCCTGTACTGCCATGATTTCAAGAAGGACGCCAAGCCTTTGGATAATCGAAAGAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

234

Amino Acids

26.1

Weight (kDa)

6.95

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 223 2.7e-54 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AciI CCGC 2 cut(s) 332, 518
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 669
AfaI GTAC 2 cut(s) 383, 647
AgsI TTSAA 4 cut(s) 155, 431, 456, 661
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 2 cut(s) 44, 399
AluI AGCT 2 cut(s) 44, 399
Alw21I GWGCWC 1 cut(s) 473
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 2 cut(s) 49, 399
AseI ATTAAT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 37, 169, 543, 599
AsuC2I CCSGG 1 cut(s) 477
AvaII GGWCC 3 cut(s) 37, 169, 543
AxyI CCTNAGG 1 cut(s) 174
BanI GGYRCC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 36, 386
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 364
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BcnI CCSGG 1 cut(s) 477
BfaI CTAG 1 cut(s) 335
BisI GCNGC 3 cut(s) 50, 332, 400
BlsI GCNGC 3 cut(s) 51, 333, 401
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 3 cut(s) 37, 169, 543
BmgT120I GGNCC 4 cut(s) 37, 169, 543, 599
BmiI GGNNCC 4 cut(s) 39, 171, 330, 481
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 16, 169, 272
BoxI GACNNNNGTC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 546
Bse21I CCTNAGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 4 cut(s) 31, 113, 184, 502
BseMII CTCAG 3 cut(s) 165, 295, 568
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 36, 386
BseYI CCCAGC 2 cut(s) 40, 44
BsgI GTGCAG 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 3 cut(s) 23, 155, 564
BsmFI GGGAC 3 cut(s) 23, 155, 564
BsnI GGCC 1 cut(s) 601
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 557
BspACI CCGC 2 cut(s) 332, 518
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 3 cut(s) 166, 294, 567
BspLI GGNNCC 4 cut(s) 39, 171, 330, 481
BspT107I GGYRCC 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 1 cut(s) 557
BssNI GRCGYC 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 546
Bst6I CTCTTC 2 cut(s) 80, 486
BstACI GRCGYC 1 cut(s) 669
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 4 cut(s) 174, 259, 281, 554
BstF5I GGATG 4 cut(s) 31, 113, 184, 502
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 560
BstMBI GATC 1 cut(s) 557
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 2 cut(s) 357, 396
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 36, 386
BstXI CCANNNNNNTGG 2 cut(s) 325, 679
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 601
BtsCI GGATG 4 cut(s) 31, 113, 184, 502
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 619
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 4 cut(s) 37, 169, 543, 599
CseI GACGC 1 cut(s) 677
Csp6I GTAC 2 cut(s) 382, 646
CviAII CATG 4 cut(s) 58, 98, 253, 653
CviJI RGCY 7 cut(s) 44, 49, 300, 399, 482, 601, 676
CviKI_1 RGCY 7 cut(s) 44, 49, 300, 399, 482, 601, 676
CviQI GTAC 2 cut(s) 382, 646
DdeI CTNAG 4 cut(s) 174, 259, 281, 554
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
Eam1104I CTCTTC 2 cut(s) 80, 486
EarI CTCTTC 2 cut(s) 80, 486
Eco130I CCWWGG 1 cut(s) 546
Eco47I GGWCC 3 cut(s) 37, 169, 543
Eco57I CTGAAG 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 4 cut(s) 61, 101, 256, 656
FaiI YATR 7 cut(s) 59, 99, 254, 356, 388, 565, 654
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 3 cut(s) 23, 155, 564
FatI CATG 4 cut(s) 57, 97, 252, 652
Fnu4HI GCNGC 3 cut(s) 50, 332, 400
FokI GGATG 4 cut(s) 38, 100, 191, 509
Fsp4HI GCNGC 3 cut(s) 50, 332, 400
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 50, 332, 400
GsaI CCCAGC 2 cut(s) 44, 48
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 4 cut(s) 61, 101, 256, 656
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 3 cut(s) 160, 362, 552
HpaII CCGG 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 165, 296, 557
Hpy188III TCNNGA 2 cut(s) 87, 661
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 4 cut(s) 7, 160, 413, 658
HpyCH4V TGCA 5 cut(s) 194, 248, 308, 437, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 396
HpyF3I CTNAG 4 cut(s) 174, 259, 281, 554
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 4 cut(s) 61, 101, 256, 656
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 557
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 9 cut(s) 30, 54, 186, 201, 286, 404, 476, 489, 656
Lsp1109I GCAGC 2 cut(s) 36, 386
LweI GCATC 3 cut(s) 16, 169, 272
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 1 cut(s) 122
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 4 cut(s) 67, 415, 503, 586
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 2 cut(s) 339, 577
MlyI GAGTC 2 cut(s) 371, 546
MnlI CCTC 9 cut(s) 83, 89, 92, 104, 169, 244, 290, 487, 521
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 4 cut(s) 9, 275, 290, 576
MspA1I CMGCKG 2 cut(s) 44, 518
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 357, 396
NciI CCSGG 1 cut(s) 477
NdeII GATC 1 cut(s) 557
NlaIII CATG 4 cut(s) 61, 101, 256, 656
NlaIV GGNNCC 4 cut(s) 39, 171, 330, 481
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 160
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 3 cut(s) 51, 333, 401
PleI GAGTC 2 cut(s) 370, 546
PpsI GAGTC 2 cut(s) 370, 546
PpuMI RGGWCCY 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 169
PspFI CCCAGC 2 cut(s) 40, 44
PspN4I GGNNCC 4 cut(s) 39, 171, 330, 481
PspPI GGNCC 4 cut(s) 37, 169, 543, 599
PspPPI RGGWCCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 2 cut(s) 383, 647
RsaNI GTAC 2 cut(s) 382, 646
SaqAI TTAA 4 cut(s) 9, 275, 290, 576
SatI GCNGC 3 cut(s) 50, 332, 400
Sau3AI GATC 1 cut(s) 557
Sau96I GGNCC 4 cut(s) 37, 169, 543, 599
SchI GAGTC 2 cut(s) 371, 546
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 473
SetI ASST 8 cut(s) 46, 75, 96, 171, 260, 387, 401, 465
SfaNI GCATC 3 cut(s) 16, 169, 272
SinI GGWCC 3 cut(s) 37, 169, 543
Sse9I AATT 2 cut(s) 339, 577
SsiI CCGC 2 cut(s) 332, 518
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 546
TaqI TCGA 2 cut(s) 522, 688
TasI AATT 2 cut(s) 339, 577
TatI WGTACW 1 cut(s) 645
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 4 cut(s) 9, 275, 290, 576
Tru9I TTAA 4 cut(s) 9, 275, 290, 576
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 49, 399
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 3 cut(s) 37, 169, 543
VspI ATTAAT 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.