Rh5AG073500

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001932
Physical Location & Seq
Reverse (-)
6270065 .. 6270848
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG073500.1

Sequence Viewer

Length: 702 bp
ATGGATTTTGAGAAAGAGTACTTGGATGCTGTTTTGGTCACAGCTGGGCTTCTGTTCATGTGTCTTTACCACCTCTTCCTCCTGTACCAATACATCCATGATGCCACCAAAACATCCATCGGTTACGAAAACAAAGACAAAGACACTTGGGTTCAAAAGATTTTGAAGGTCACTGAGGGTACTAATGATGATGCAGTCGGGGACAACGTTAGCACCGGACTTAGTGTGATTTCCTCAAACACAAGCGCAACCATGACCTTAGCGTCAATCTCCTTAACTCTCTGCGCTGTTATCGGAGTCTGGATTGCAAGTTCAACCAATAAGTTCTTCCCATTAGAAATGATTTACGGCAACACAAGCGAGTCAATCATTTCTATCAAGTACTTATGCCTGTTGAGCTGCTTTCTCCTTGCTTTTTCGTTCTTCGTTCAATCTGCGAGGCACTTTGTCCATTCAAACTACCTATTGAGCACTCCAGGAGCCACGAAAGAAGAGGATGTGGAAAAAGTGCAGAAAGCGGTTGAAAGAGGAAGTATCTTTTGGTCATTGGGACTCAGAGCACTATATTTTGCTCTTAATTTTCTGCTGTGGTTCTTCGGGCCTATACCAATGTGTGCTTGCTCTATTGTAATGGTATTTGTCCTGTACTGCCATGATTTCAGGAAGGACTCGAAACAGTCAGATAGTCGAAAGAAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

233

Amino Acids

26.2

Weight (kDa)

6.2

Isoelectric Point (pI)

24.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 222 1e-55 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
AciI CCGC 1 cut(s) 518
AclI AACGTT 1 cut(s) 207
AfaI GTAC 5 cut(s) 20, 86, 181, 383, 647
AgsI TTSAA 6 cut(s) 155, 166, 315, 431, 456, 524
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 5 cut(s) 37, 311, 343, 523, 555
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 2 cut(s) 44, 399
AluI AGCT 2 cut(s) 44, 399
Alw21I GWGCWC 2 cut(s) 473, 562
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 1 cut(s) 399
AspLEI GCGC 2 cut(s) 248, 287
AspS9I GGNCC 1 cut(s) 599
Bbv12I GWGCWC 2 cut(s) 473, 562
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 477
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
BmcAI AGTACT 2 cut(s) 20, 383
Bme1390I CCNGG 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 16, 91, 181
BpmI CTGGAG 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 215
BseBI CCWGG 1 cut(s) 477
BseGI GGATG 4 cut(s) 31, 93, 113, 502
BseMII CTCAG 2 cut(s) 165, 568
BseXI GCAGC 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 530
BshFI GGCC 1 cut(s) 601
BsiHKAI GWGCWC 2 cut(s) 473, 562
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 215, 564
BsmFI GGGAC 2 cut(s) 215, 564
BsnI GGCC 1 cut(s) 601
Bsp1286I GDGCHC 2 cut(s) 473, 562
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 166, 567
BspLI GGNNCC 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 2 cut(s) 80, 486
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 4 cut(s) 174, 221, 259, 554
BstF5I GGATG 4 cut(s) 31, 93, 113, 502
BstHHI GCGC 2 cut(s) 248, 287
BstMWI GCNNNNNNNGC 2 cut(s) 357, 396
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 601
BtsCI GGATG 4 cut(s) 31, 93, 113, 502
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 619
CfoI GCGC 2 cut(s) 248, 287
Cfr13I GGNCC 1 cut(s) 599
CseI GACGC 1 cut(s) 252
Csp6I GTAC 5 cut(s) 19, 85, 180, 382, 646
CviAII CATG 4 cut(s) 58, 98, 253, 653
CviJI RGCY 5 cut(s) 44, 49, 399, 482, 601
CviKI_1 RGCY 5 cut(s) 44, 49, 399, 482, 601
CviQI GTAC 5 cut(s) 19, 85, 180, 382, 646
DdeI CTNAG 4 cut(s) 174, 221, 259, 554
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 80, 486
EarI CTCTTC 2 cut(s) 80, 486
EcoRII CCWGG 1 cut(s) 475
FaeI CATG 4 cut(s) 61, 101, 256, 656
FaiI YATR 7 cut(s) 59, 99, 254, 388, 565, 605, 654
FaqI GGGAC 2 cut(s) 215, 564
FatI CATG 4 cut(s) 57, 97, 252, 652
Fnu4HI GCNGC 1 cut(s) 400
FokI GGATG 4 cut(s) 38, 80, 100, 509
Fsp4HI GCNGC 1 cut(s) 400
GlaI GCGC 2 cut(s) 247, 286
GluI GCNGC 1 cut(s) 400
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 252
HhaI GCGC 2 cut(s) 248, 287
Hin1II CATG 4 cut(s) 61, 101, 256, 656
Hin6I GCGC 2 cut(s) 246, 285
HinP1I GCGC 2 cut(s) 246, 285
HinfI GANTC 4 cut(s) 297, 362, 552, 668
HpaII CCGG 1 cut(s) 216
Hpy188I TCNGA 3 cut(s) 296, 557, 682
Hpy188III TCNNGA 2 cut(s) 301, 661
HpyAV CCTTC 3 cut(s) 160, 658, 688
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 194, 308, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 396
HpyF3I CTNAG 4 cut(s) 174, 221, 259, 554
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 61, 101, 256, 656
HspAI GCGC 2 cut(s) 246, 285
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 9 cut(s) 30, 95, 229, 286, 404, 462, 489, 646, 656
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 3 cut(s) 16, 91, 181
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 37, 122, 169
MboII GAAGA 5 cut(s) 67, 319, 415, 503, 586
MhlI GDGCHC 2 cut(s) 473, 562
MluCI AATT 1 cut(s) 577
MlyI GAGTC 4 cut(s) 306, 371, 546, 662
MnlI CCTC 7 cut(s) 83, 89, 169, 244, 432, 487, 521
MseI TTAA 2 cut(s) 275, 576
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 357, 396
NlaIII CATG 4 cut(s) 61, 101, 256, 656
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 2 cut(s) 37, 169
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 1 cut(s) 401
PleI GAGTC 4 cut(s) 305, 370, 546, 662
PpsI GAGTC 4 cut(s) 305, 370, 546, 662
Psp1406I AACGTT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 5 cut(s) 20, 86, 181, 383, 647
RsaNI GTAC 5 cut(s) 19, 85, 180, 382, 646
SaqAI TTAA 2 cut(s) 275, 576
SatI GCNGC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 599
ScaI AGTACT 2 cut(s) 20, 383
SchI GAGTC 4 cut(s) 306, 371, 546, 662
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 2 cut(s) 473, 562
SetI ASST 7 cut(s) 46, 75, 171, 210, 260, 401, 465
SfaNI GCATC 3 cut(s) 16, 91, 181
Sse9I AATT 1 cut(s) 577
SsiI CCGC 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 671, 688
TasI AATT 1 cut(s) 577
TatI WGTACW 3 cut(s) 18, 381, 645
Tru1I TTAA 2 cut(s) 275, 576
Tru9I TTAA 2 cut(s) 275, 576
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 37, 169
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 2 cut(s) 37, 169
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 178
ZrmI AGTACT 2 cut(s) 20, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.