Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Reverse (-)

37685576 .. 37686357

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1287700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTTTTTCAGAAGGAGTACTTAGATGTAGTGCTGGTCCCGTTGGGGCTCTTGATCATGCTAATCTACCACCTCTTCCTCCTCTACAAATACCTCAATCAGCCTCTCTCCACCGCTATTGGGTCCGAAAACATTGACAAGAAAATTTGGGTTGGAAAAGTTTTGCGGGTAAGTTCCATATCTTCTTTAATATCCCCCAAAATATTTGCAGTTCGTTTATATATACTACTCCCGAGTGCAGGTGCGAATGCTGTTAACCAGTTGAGCTACCAGCCCTTGCAATTGCAAGTTCTGTCTCTTGATGTGATTTCCTCCAATACAAGTGCAACTACAATCTTAGCATCAATCTCTCTAACTCTCTGCTCTCTCATCGGAGCTTGGATGGCAAACTCAGCCAATAACTTCTTGCCAAGCCAAATAATATATGGCAACACAGACCCAGTGACTGTTTCTATCAAGTACATTTGCATCTTGACATGTTTTCTCCTTGCTTTTTCATGCTTTGTTCAAACAGCTCGGCACTTTGTCCACTCAAACTACCTTTTAGCCACCCCGGGAGCTACCGCGAAAAGCGACGTGAAAAAAGCCGAGGGAGCTGTTCAAGGGGGAAGTGAGTTTTGGTCACTTGGGCTTAGAGCACTCTACTTTGCTCTCAATTTTCTGCTGTGGTTTTTTGGACCTATTCCCATGTTAGCTTCCTCCGTCGCAACCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

239

Amino Acids

26.02

Weight (kDa)

9.03

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF599	PF04654	11 - 55	4.2e-08	Protein of unknown function, DUF599
DUF599	PF04654	95 - 238	7.6e-39	Protein of unknown function, DUF599

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	230
AccII	CGCG	1 cut(s)	566
AciI	CCGC	3 cut(s)	114, 166, 564
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	2 cut(s)	20, 461
AfiI	CCNNNNNNNGG	2 cut(s)	120, 239
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	509, 602
AjiI	CACGTC	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AluBI	AGCT	6 cut(s)	267, 377, 515, 560, 596, 695
AluI	AGCT	6 cut(s)	267, 377, 515, 560, 596, 695
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	2 cut(s)	232, 553
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	3 cut(s)	37, 123, 677
AsuC2I	CCSGG	2 cut(s)	554, 555
AvaI	CYCGRG	2 cut(s)	232, 553
AvaII	GGWCC	3 cut(s)	37, 123, 677
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	640
BccI	CCATC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	2 cut(s)	554, 555
BcoDI	GTCTC	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	230
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	554, 555
Bme18I	GGWCC	3 cut(s)	37, 123, 677
BmeT110I	CYCGRG	2 cut(s)	232, 553
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	37, 123, 677
BmiI	GGNNCC	2 cut(s)	39, 124
BmrFI	CCNGG	2 cut(s)	554, 555
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	350, 477
BmuI	ACTGGG	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	554, 555
BsaJI	CCNNGG	3 cut(s)	552, 553, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 239
Bse1I	ACTGG	2 cut(s)	259, 440
BseDI	CCNNGG	3 cut(s)	552, 553, 588
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	120, 239
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	259, 440
BseRI	GAGGAG	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	640
BsiHKCI	CYCGRG	2 cut(s)	232, 553
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	120, 239
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	253
BsoBI	CYCGRG	2 cut(s)	232, 553
Bsp1286I	GDGCHC	2 cut(s)	51, 640
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	3 cut(s)	114, 166, 564
BspCNI	CTCAG	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	39, 124
BspMI	ACCTGC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	259, 440
BssECI	CCNNGG	3 cut(s)	552, 553, 588
BssMI	GATC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	448, 712
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	4 cut(s)	22, 337, 391, 632
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 392, 593
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	552, 553
BstUI	CGCG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	37, 123, 677
Cfr9I	CCCGGG	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	19, 460
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	4 cut(s)	58, 477, 498, 688
CviQI	GTAC	2 cut(s)	19, 460
DdeI	CTNAG	4 cut(s)	22, 337, 391, 632
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	3 cut(s)	37, 123, 677
Eco88I	CYCGRG	2 cut(s)	232, 553
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	4 cut(s)	61, 480, 501, 691
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	4 cut(s)	57, 476, 497, 687
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	54
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	51
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	4 cut(s)	61, 480, 501, 691
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	554
Hpy166II	GTNNAC	2 cut(s)	256, 529
Hpy188I	TCNGA	3 cut(s)	12, 127, 374
Hpy188III	TCNNGA	4 cut(s)	52, 232, 299, 472
Hpy8I	GTNNAC	2 cut(s)	256, 529
Hpy99I	CGWCG	2 cut(s)	578, 707
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	448, 712
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	6 cut(s)	209, 239, 280, 286, 326, 468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 392, 593
HpyF3I	CTNAG	4 cut(s)	22, 337, 391, 632
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	4 cut(s)	61, 480, 501, 691
Ksp22I	TGATCA	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	374, 557, 593
LpnPI	CCDG	6 cut(s)	20, 225, 272, 284, 453, 567
LweI	GCATC	2 cut(s)	350, 477
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	2 cut(s)	442, 621
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	67, 174
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	51, 640
MluCI	AATT	3 cut(s)	144, 281, 655
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	8 cut(s)	83, 89, 92, 104, 114, 322, 583, 709
MseI	TTAA	2 cut(s)	188, 255
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	2 cut(s)	554, 555
MunI	CAATTG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	383, 392, 593
NciI	CCSGG	2 cut(s)	554, 555
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	4 cut(s)	61, 480, 501, 691
NlaIV	GGNNCC	2 cut(s)	39, 124
NmeAIII	GCCGAG	2 cut(s)	496, 613
NmuCI	GTSAC	2 cut(s)	442, 621
NspI	RCATGY	1 cut(s)	480
PaqCI	CACCTGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	476
PctI	GAATGC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	39, 124
PspPI	GGNCC	3 cut(s)	37, 123, 677
PstNI	CAGNNNCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	20, 461
RsaNI	GTAC	2 cut(s)	19, 460
SaqAI	TTAA	2 cut(s)	188, 255
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	3 cut(s)	37, 123, 677
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	554, 555
SduI	GDGCHC	2 cut(s)	51, 640
SfaNI	GCATC	2 cut(s)	350, 477
SinI	GGWCC	3 cut(s)	37, 123, 677
SmaI	CCCGGG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	144, 281, 655
SsiI	CCGC	3 cut(s)	114, 166, 564
SspI	AATATT	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	552, 553
TaaI	ACNGT	2 cut(s)	448, 712
TaiI	ACGT	1 cut(s)	579
TasI	AATT	3 cut(s)	144, 281, 655
TatI	WGTACW	2 cut(s)	18, 459
Tru1I	TTAA	2 cut(s)	188, 255
Tru9I	TTAA	2 cut(s)	188, 255
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	442, 621
Tsp45I	GTSAC	2 cut(s)	442, 621
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	691
TspMI	CCCGGG	1 cut(s)	553
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	3 cut(s)	37, 123, 677
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XmaI	CCCGGG	1 cut(s)	553
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.