Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Reverse (-)

5686134 .. 5687279

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG069600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTAGTAGCGACTTGATTATAAGTTGGATGACCCTTTGTCCAATCCAAAGGAAAATTGCTTGTGAAGTCAATGCCTTGAACAAATCCCAAGCTACCATGAACTGCTCCAAATTATATAAGCAAGTACACCAACACAAGGGAGCAGAGACAATGAATTTTGAGAGGGGGTACATCGATGTGGTTCTGGTCCCATTCGGGCTTCTGATCATGTTGATTTACCACCTCTTCTTCCTCTACAAGTATTTCCATCAACCTCTATCCACATCCATGGGGTATGAAAACAACGACAAGCAAATTTGGGTTGCAAAAATTCTTCAGGTGCAGGGTGACAATGTTAACAGAGGACTTGGTGTGATTTCTTCCAATACAAGTGCAGCCATGACCTTAGCATCAATCTGTTTGACTCTCTCTTCTCTACTCGGAGTTTGGATAGCAAATTCTCCCAGCAAGTCCTTCCCAATAGAAATGATCTATGGCAATACGACTCCATCGATGAATTCAATCAAGTATATCTGCTTGTTGACCTCTTTTCTGCTTGCTTTCTCGTGCTTCGTTCAATCGGCTAGGCACTTTGTCCATTCGAACTACCTATTGAGCACTCCGGGGGCTAGCGATAAAGGGGTTGTGAAGAAGGTGGAAAGAGCAGTTCAAAGAGGAAGTGAATTTTGGTCGCTTGGGCTTAGAGCACTGTATTTTGCTCTAAATTTTCTGCTGTGGTTTTTTGGACCTATACCTATGTTTGTTTCCTCTATCATAATGGTGGTGATTCTGTATTGCCATGATTTTAGGAAGTCGGAATCGGATAATCTCCATGATGTATTATTGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

278

Amino Acids

31.33

Weight (kDa)

8.91

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF599	PF04654	62 - 265	5.4e-55	Protein of unknown function, DUF599

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AcsI	RAATTY	7 cut(s)	157, 297, 312, 439, 499, 665, 706
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	129, 173
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	82, 504, 560, 653
AhdI	GACNNNNNGTC	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	652, 684
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	2 cut(s)	602, 691
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	7 cut(s)	157, 297, 312, 439, 499, 665, 706
AspS9I	GGNCC	2 cut(s)	190, 728
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	341, 778
AsuII	TTCGAA	1 cut(s)	584
AsuNHI	GCTAGC	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	190, 728
BauI	CACGAG	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	602, 691
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	2 cut(s)	258, 499
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	3 cut(s)	6, 567, 612
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	2 cut(s)	190, 728
BmeRI	GACNNNNNGTC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	190, 728
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	401
BmtI	GCTAGC	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	606
Bsa29I	ATCGAT	2 cut(s)	177, 494
BsaJI	CCNNGG	2 cut(s)	270, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseCI	ATCGAT	2 cut(s)	177, 494
BseDI	CCNNGG	2 cut(s)	270, 605
BseGI	GGATG	2 cut(s)	36, 266
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	389
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	2 cut(s)	344, 396
BshVI	ATCGAT	2 cut(s)	177, 494
BsiHKAI	GWGCWC	2 cut(s)	602, 691
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	602, 691
Bsp143I	GATC	2 cut(s)	207, 471
Bsp19I	CCATGG	1 cut(s)	270
BspDI	ATCGAT	2 cut(s)	177, 494
BspLI	GGNNCC	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	270, 605
BssMI	GATC	2 cut(s)	207, 471
BssSI	CACGAG	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	547
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	2 cut(s)	233, 418
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	540, 613
BstDEI	CTNAG	2 cut(s)	388, 683
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	36, 266
BstKTI	GATC	2 cut(s)	210, 474
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	207, 471
BstSCI	CCNGG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	271
Bsu15I	ATCGAT	2 cut(s)	177, 494
BsuTUI	ATCGAT	2 cut(s)	177, 494
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	36, 266
BtsIMutI	CAGTG	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	540, 613
Cfr13I	GGNCC	2 cut(s)	190, 728
ClaI	ATCGAT	2 cut(s)	177, 494
Csp6I	GTAC	2 cut(s)	128, 172
CviAII	CATG	6 cut(s)	100, 211, 271, 382, 782, 815
CviJI	RGCY	7 cut(s)	5, 95, 202, 380, 566, 611, 682
CviKI_1	RGCY	7 cut(s)	5, 95, 202, 380, 566, 611, 682
CviQI	GTAC	2 cut(s)	128, 172
DdeI	CTNAG	2 cut(s)	388, 683
DpnI	GATC	2 cut(s)	209, 473
DpnII	GATC	2 cut(s)	207, 471
DriI	GACNNNNNGTC	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	233, 418
Eam1105I	GACNNNNNGTC	1 cut(s)	39
EarI	CTCTTC	2 cut(s)	233, 418
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	190, 728
Eco57I	CTGAAG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	6 cut(s)	103, 214, 274, 385, 785, 818
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	6 cut(s)	99, 210, 270, 381, 781, 814
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	2 cut(s)	43, 253
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	3 cut(s)	6, 567, 612
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	450
HapII	CCGG	1 cut(s)	605
Hin1II	CATG	6 cut(s)	103, 214, 274, 385, 785, 818
HincII	GTYRAC	2 cut(s)	340, 525
HindII	GTYRAC	2 cut(s)	340, 525
HinfI	GANTC	4 cut(s)	406, 487, 769, 800
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	341, 778
Hpy166II	GTNNAC	3 cut(s)	130, 340, 525
Hpy188I	TCNGA	4 cut(s)	207, 425, 799, 805
Hpy188III	TCNNGA	1 cut(s)	834
Hpy8I	GTNNAC	3 cut(s)	130, 340, 525
HpyAV	CCTTC	2 cut(s)	466, 628
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4V	TGCA	3 cut(s)	308, 325, 377
HpyF3I	CTNAG	2 cut(s)	388, 683
Hsp92II	CATG	6 cut(s)	103, 214, 274, 385, 785, 818
Ksp22I	TGATCA	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	207, 471
LmnI	GCTCC	2 cut(s)	113, 143
LpnPI	CCDG	5 cut(s)	173, 305, 311, 460, 618
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	3 cut(s)	6, 567, 612
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	209, 473
MboI	GATC	2 cut(s)	207, 471
MboII	GAAGA	6 cut(s)	220, 223, 308, 354, 405, 643
MhlI	GDGCHC	2 cut(s)	602, 691
MluCI	AATT	9 cut(s)	57, 113, 157, 297, 312, 439, 499, 665, 706
MlyI	GAGTC	2 cut(s)	400, 481
MmeI	TCCRAC	2 cut(s)	8, 777
MnlI	CCTC	8 cut(s)	159, 236, 245, 267, 338, 538, 650, 760
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	3 cut(s)	179, 269, 761
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	606
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	207, 471
NheI	GCTAGC	1 cut(s)	611
NlaIII	CATG	6 cut(s)	103, 214, 274, 385, 785, 818
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	769, 800
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	2 cut(s)	400, 481
PpsI	GAGTC	2 cut(s)	400, 481
PsiI	TTATAA	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	190, 728
RsaI	GTAC	2 cut(s)	129, 173
RsaNI	GTAC	2 cut(s)	128, 172
RseI	CAYNNNNRTG	3 cut(s)	179, 269, 761
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	207, 471
Sau96I	GGNCC	2 cut(s)	190, 728
SchI	GAGTC	2 cut(s)	400, 481
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	602, 691
SfaNI	GCATC	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	584
SinI	GGWCC	2 cut(s)	190, 728
SmiMI	CAYNNNNRTG	3 cut(s)	179, 269, 761
Sse9I	AATT	9 cut(s)	57, 113, 157, 297, 312, 439, 499, 665, 706
SspMI	CTAG	3 cut(s)	6, 567, 612
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	693
TaqI	TCGA	3 cut(s)	177, 494, 584
TasI	AATT	9 cut(s)	57, 113, 157, 297, 312, 439, 499, 665, 706
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	2 cut(s)	769, 800
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	116, 170, 294, 512
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	2 cut(s)	190, 728
XapI	RAATTY	7 cut(s)	157, 297, 312, 439, 499, 665, 706
XspI	CTAG	3 cut(s)	6, 567, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.