Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Reverse (-)

2612349 .. 2613629

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTTTCTTCATGAGTACCTTGATGTGGTGTTGGTTCCAAGTGGGCTGCTAATCATGTTATTCTACCACCTCTTCCTTCTTTACACATACAGAAAATACCCTAAATACACATCCATGGGATATGAAATCAATGACAAAAAAGTTTGGGTTGAGAAAATTTTGAAGGGTGATAATGATGATATAGTCAGAAAGAATGTTAGCAGAGGCCTTGGTGTGATTGCCTCCAACACAAGTGCAACTATGTACTTAGCCGCAATCTCCTTGACTCTCTGCTCTCTCATTGGAACTTGGATGGCAAACTCCACAGACAACTTCTTCCCAAAAGAAATGATATATGGCAACACAAGCCCATCAATTATTTCAATCAAGTACATATGCCTCTTGTCAAGCTTTCTCTTTGCTTTCTCATTCTTTGTTCAATCAACCAGGCACTTTGTCCACTCAAACTACCTACTAAGCACTCCAGATCTATCAGATTTGGAAAAACAGGACAGAGAGAAAAAAGTGGAGAATGCAGTTCAAAGGGGAAGTGAGTTTTGGTCACTTGGGCTCAGAGCACTATATTTTGCTCTCAACTTTCTGCTATGGTTTTTTGGGCCCATACCCATGTTTGTTTCCTCCATGATCATGGTGCTCGTCCTTTGTTGCCATGACTTGAGGTCAGACACCAAAAAAGACTTGAAGTCAACGTCAAACAATCAAAAGGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

239

Amino Acids

27.36

Weight (kDa)

8.24

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	3 cut(s)	20, 248, 374
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	166, 366, 422, 524, 685
AhdI	GACNNNNNGTC	2 cut(s)	661, 685
AjnI	CCWGG	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	523, 555
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw21I	GWGCWC	2 cut(s)	562, 639
AoxI	GGCC	2 cut(s)	208, 599
ApaI	GGGCCC	1 cut(s)	603
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	599, 600
AsuHPI	GGTGA	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	603
BanII	GRGCYC	2 cut(s)	555, 603
Bbv12I	GWGCWC	2 cut(s)	562, 639
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	289, 361, 704
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	627
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	2 cut(s)	50, 255
BlsI	GCNGC	2 cut(s)	51, 256
Bme1390I	CCNGG	1 cut(s)	430
BmeRI	GACNNNNNGTC	2 cut(s)	661, 685
BmgT120I	GGNCC	2 cut(s)	599, 600
BmiI	GGNNCC	2 cut(s)	39, 601
BmrFI	CCNGG	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	679
BsaJI	CCNNGG	2 cut(s)	117, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	117, 211
BseGI	GGATG	3 cut(s)	113, 300, 715
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	568
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	2 cut(s)	210, 601
BsiHKAI	GWGCWC	2 cut(s)	562, 639
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	210, 601
Bsp120I	GGGCCC	1 cut(s)	599
Bsp1286I	GDGCHC	4 cut(s)	555, 562, 603, 639
Bsp143I	GATC	2 cut(s)	469, 627
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	210, 601
BspCNI	CTCAG	1 cut(s)	567
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	39, 601
BssECI	CCNNGG	2 cut(s)	117, 211
BssMI	GATC	2 cut(s)	469, 627
BssT1I	CCWWGG	2 cut(s)	117, 211
Bst2UI	CCWGG	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	250, 458, 554
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	113, 300, 715
BstKTI	GATC	2 cut(s)	472, 630
BstMBI	GATC	2 cut(s)	469, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	210, 601
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	113, 300, 715
CciI	TCATGA	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	599, 600
Csp6I	GTAC	3 cut(s)	19, 247, 373
CviAII	CATG	7 cut(s)	14, 58, 118, 610, 625, 631, 653
CviJI	RGCY	7 cut(s)	49, 210, 254, 351, 393, 553, 601
CviKI_1	RGCY	7 cut(s)	49, 210, 254, 351, 393, 553, 601
CviQI	GTAC	3 cut(s)	19, 247, 373
DdeI	CTNAG	3 cut(s)	250, 458, 554
DpnI	GATC	2 cut(s)	471, 629
DpnII	GATC	2 cut(s)	469, 627
DriI	GACNNNNNGTC	2 cut(s)	661, 685
Eam1104I	CTCTTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	2 cut(s)	661, 685
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	117, 211
Eco147I	AGGCCT	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	555, 603
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	117, 211
EcoT38I	GRGCYC	2 cut(s)	555, 603
ErhI	CCWWGG	2 cut(s)	117, 211
FaeI	CATG	7 cut(s)	17, 61, 121, 613, 628, 634, 656
FatI	CATG	7 cut(s)	13, 57, 117, 609, 624, 630, 652
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	50, 255
FokI	GGATG	2 cut(s)	100, 307
FriOI	GRGCYC	2 cut(s)	555, 603
Fsp4HI	GCNGC	2 cut(s)	50, 255
GluI	GCNGC	2 cut(s)	50, 255
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	210, 601
Hin1II	CATG	7 cut(s)	17, 61, 121, 613, 628, 634, 656
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	442, 690
Hpy188I	TCNGA	4 cut(s)	191, 478, 557, 667
Hpy188III	TCNNGA	2 cut(s)	14, 467
Hpy8I	GTNNAC	2 cut(s)	442, 690
HpyAV	CCTTC	2 cut(s)	89, 160
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	2 cut(s)	239, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	3 cut(s)	250, 458, 554
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	7 cut(s)	17, 61, 121, 613, 628, 634, 656
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	469, 627
LpnPI	CCDG	4 cut(s)	415, 442, 476, 480
Lsp1109I	GCAGC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	2 cut(s)	471, 629
MboI	GATC	2 cut(s)	469, 627
MboII	GAAGA	2 cut(s)	67, 310
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	4 cut(s)	555, 562, 603, 639
MluCI	AATT	2 cut(s)	159, 357
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	6 cut(s)	83, 200, 235, 392, 631, 654
MslI	CAYNNNNRTG	3 cut(s)	116, 608, 629
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	2 cut(s)	469, 627
NlaIII	CATG	7 cut(s)	17, 61, 121, 613, 628, 634, 656
NlaIV	GGNNCC	2 cut(s)	39, 601
NmuCI	GTSAC	1 cut(s)	543
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	51, 256
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	39, 601
PspOMI	GGGCCC	1 cut(s)	599
PspPI	GGNCC	2 cut(s)	599, 600
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	3 cut(s)	20, 248, 374
RsaNI	GTAC	3 cut(s)	19, 247, 373
RseI	CAYNNNNRTG	3 cut(s)	116, 608, 629
SatI	GCNGC	2 cut(s)	50, 255
Sau3AI	GATC	2 cut(s)	469, 627
Sau96I	GGNCC	2 cut(s)	599, 600
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	4 cut(s)	555, 562, 603, 639
SetI	ASST	6 cut(s)	24, 75, 395, 456, 665, 695
SmiMI	CAYNNNNRTG	3 cut(s)	116, 608, 629
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	2 cut(s)	159, 357
SseBI	AGGCCT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	2 cut(s)	117, 211
TaiI	ACGT	1 cut(s)	695
TasI	AATT	2 cut(s)	159, 357
TatI	WGTACW	2 cut(s)	246, 372
TauI	GCSGC	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	1 cut(s)	141
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.