MD05G1309100.v1.1

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0001932
Physical Location & Seq
Reverse (-)
43989556 .. 43990046
491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1309100.v1.1.491

Sequence Viewer

Length: 309 bp
ATGAGATTGGAAGCTATGGGTTTTCAGGAGTACTTACATGTTGTGCTAGTCCAGTTCGGACTGCTGATCGTGCTAATCTACCACCTCTTCCTCCTCTACAAATACATCAATCACCCTCTCTCCACTGCCATTGGATCTGAAAACATTGACAAGAAAAATAGGGTTGGAAAAATCTTGCAGGGTGAAGATGTTCAAGTTGCAACGAAAGTTAAAACAGCTCTTGATGTTATTTCCTCCAATACAATTGCAACTACGTCCTTAGCATCAGTGGCGGAGCCAGAAATTCATGTTAGGAGGGGCACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

8.06

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 15 - 90 3e-07 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 2 cut(s) 14, 218
AluI AGCT 2 cut(s) 14, 218
AlwI GGATC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 104, 194
BaeGI GKGCMC 1 cut(s) 302
BfaI CTAG 1 cut(s) 47
BmcAI AGTACT 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 66, 134
BspACI CCGC 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 52
BssMI GATC 2 cut(s) 66, 134
Bst6I CTCTTC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 259
BstKTI GATC 2 cut(s) 69, 137
BstMBI GATC 2 cut(s) 66, 134
BstMWI GCNNNNNNNGC 2 cut(s) 70, 269
BstNSI RCATGY 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 273
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 2 cut(s) 38, 287
CviJI RGCY 3 cut(s) 14, 218, 277
CviKI_1 RGCY 3 cut(s) 14, 218, 277
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 259
DpnI GATC 2 cut(s) 68, 136
DpnII GATC 2 cut(s) 66, 134
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 287
FaeI CATG 2 cut(s) 41, 290
FaiI YATR 3 cut(s) 17, 39, 288
FatI CATG 2 cut(s) 37, 286
FspBI CTAG 1 cut(s) 47
Hin1II CATG 2 cut(s) 41, 290
HphI GGTGA 2 cut(s) 104, 194
Hpy188I TCNGA 2 cut(s) 59, 139
Hpy188III TCNNGA 2 cut(s) 26, 221
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 178, 200, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 269
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 2 cut(s) 41, 290
Kzo9I GATC 2 cut(s) 66, 134
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 4 cut(s) 11, 65, 164, 291
LweI GCATC 1 cut(s) 272
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 254
MalI GATC 2 cut(s) 68, 136
MboI GATC 2 cut(s) 66, 134
MboII GAAGA 2 cut(s) 79, 197
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 243, 282
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 6 cut(s) 95, 101, 104, 126, 244, 288
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 210, 307
MunI CAATTG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 70, 269
NdeII GATC 2 cut(s) 66, 134
NlaIII CATG 2 cut(s) 41, 290
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 1 cut(s) 41
PciI ACATGT 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 189
PscI ACATGT 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 210, 307
Sau3AI GATC 2 cut(s) 66, 134
ScaI AGTACT 1 cut(s) 32
SduI GDGCHC 1 cut(s) 302
SetI ASST 4 cut(s) 16, 87, 220, 257
SfaNI GCATC 1 cut(s) 272
Sse9I AATT 2 cut(s) 243, 282
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 47
TaiI ACGT 1 cut(s) 257
TasI AATT 2 cut(s) 243, 282
TatI WGTACW 1 cut(s) 30
Tru1I TTAA 2 cut(s) 210, 307
Tru9I TTAA 2 cut(s) 210, 307
TscAI CASTG 2 cut(s) 130, 273
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 2 cut(s) 130, 273
XapI RAATTY 1 cut(s) 282
XceI RCATGY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.