Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Forward (+)

2613912 .. 2615119

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATTTTAAGAACTTTCAGGAGGAGTATCTGGATATGGTGTTGGTACCAAGTGGGCTATTGATCATGCTAATTTACCACCTCTTCCTCCTCTATAAGTACCTCAAACATCCTCTCTCCACAGCCATGGGCTATGAAAACAAGGACAAAAAAACTTGGGTTGGAAAAATTCTTCAGGGTCAAGATAGTGCTACAGCTGTCACTGTGATTTCCACCAATACAACTGCAACTATTTACTTGGCAACAATCTCTTTAACTCTTTGTTCTCTCATTGGAGCTTGGATGGCAAAATCCACCAACAATTTCTTCCCAAGAGAAATAATATATGGCAACACAAGCCCATCCATTATTTCTATCAAGTACATTTGCCTCTTGACCTGTTTTCTCCTGGCTTTTTCATGCTTTGTTCAATCAGCCAGGCACCTTGTCCATTCAAACTACCTGCTAAGCACTCCAGGAGCTACTTCTAAAGCTGATGTGAGAAAAGCTAAGAGAGCGGTTGAAAAGGGAAGTGAATTTTGGTCACTGGGGCTTAGAGCACTATATTTTGCTCTTAATTTTCTGCTATGGTTTTTTGGACCTGTGCCCATGTTTGTTTCGTCTGTCACAACGGTTGTGATCTTATCTTGCCACGACTTCAAGAGGTCAGATAATAATCAAAAGTGGCCTGCCTCAGCTGTGGCTGTAAATGAAAGTGCATTATTAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

238

Amino Acids

26.54

Weight (kDa)

9.15

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	450
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	2 cut(s)	46, 420
AccBSI	CCGCTC	1 cut(s)	497
AciI	CCGC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	168, 515
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	3 cut(s)	48, 101, 362
AgsI	TTSAA	4 cut(s)	410, 435, 503, 640
AjnI	CCWGG	3 cut(s)	387, 416, 454
AjuI	GAANNNNNNNTTGG	4 cut(s)	290, 322, 502, 534
AluBI	AGCT	6 cut(s)	197, 278, 461, 473, 488, 677
AluI	AGCT	6 cut(s)	197, 278, 461, 473, 488, 677
Alw21I	GWGCWC	1 cut(s)	541
AoxI	GGCC	1 cut(s)	665
ApoI	RAATTY	2 cut(s)	168, 515
AseI	ATTAAT	1 cut(s)	704
Asp718I	GGTACC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	588
BanI	GGYRCC	2 cut(s)	46, 420
Bbv12I	GWGCWC	1 cut(s)	541
BbvCI	CCTCAGC	1 cut(s)	673
BccI	CCATC	2 cut(s)	277, 349
BciT130I	CCWGG	3 cut(s)	389, 418, 456
BclI	TGATCA	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	450
BlpI	GCTNAGC	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	389, 418, 456
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	48, 422
BmrFI	CCNGG	3 cut(s)	389, 418, 456
BmrI	ACTGGG	1 cut(s)	536
BmuI	ACTGGG	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	673
Bpu1102I	GCTNAGC	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	3 cut(s)	389, 418, 456
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	3 cut(s)	109, 288, 341
BseJI	GATNNNNATC	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	2 cut(s)	38, 80
BseSI	GKGCMC	1 cut(s)	588
BshFI	GGCC	1 cut(s)	667
BshNI	GGYRCC	2 cut(s)	46, 420
BsiHKAI	GWGCWC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	541, 588
Bsp143I	GATC	2 cut(s)	63, 618
Bsp1720I	GCTNAGC	1 cut(s)	446
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	1 cut(s)	686
BspLI	GGNNCC	2 cut(s)	48, 422
BspMI	ACCTGC	1 cut(s)	450
BspT107I	GGYRCC	2 cut(s)	46, 420
BsrBI	CCGCTC	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	63, 618
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	3 cut(s)	389, 418, 456
Bst4CI	ACNGT	2 cut(s)	205, 613
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	4 cut(s)	446, 489, 533, 673
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	109, 288, 341
BstKTI	GATC	2 cut(s)	66, 621
BstMBI	GATC	2 cut(s)	63, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 336, 494
BstNI	CCWGG	3 cut(s)	389, 418, 456
BstSCI	CCNGG	3 cut(s)	387, 416, 454
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	588
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	667
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	109, 288, 341
BtsIMutI	CAGTG	2 cut(s)	201, 524
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	47, 100, 361
CviAII	CATG	4 cut(s)	67, 127, 399, 589
CviQI	GTAC	3 cut(s)	47, 100, 361
DdeI	CTNAG	4 cut(s)	446, 489, 533, 673
DpnI	GATC	2 cut(s)	65, 620
DpnII	GATC	2 cut(s)	63, 618
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	387, 416, 454
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	4 cut(s)	70, 130, 402, 592
FatI	CATG	4 cut(s)	66, 126, 398, 588
FbaI	TGATCA	1 cut(s)	63
FokI	GGATG	3 cut(s)	96, 295, 328
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	667
Hin1II	CATG	4 cut(s)	70, 130, 402, 592
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	6 cut(s)	20, 32, 182, 373, 640, 711
HpyCH4III	ACNGT	2 cut(s)	205, 613
HpyCH4V	TGCA	2 cut(s)	227, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 336, 494
HpyF3I	CTNAG	4 cut(s)	446, 489, 533, 673
Hsp92II	CATG	4 cut(s)	70, 130, 402, 592
KpnI	GGTACC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 618
LmnI	GCTCC	2 cut(s)	275, 458
MaeIII	GTNAC	3 cut(s)	199, 522, 604
MalI	GATC	2 cut(s)	65, 620
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	2 cut(s)	63, 618
MboII	GAAGA	3 cut(s)	76, 164, 298
MhlI	GDGCHC	2 cut(s)	541, 588
MluCI	AATT	6 cut(s)	72, 168, 301, 515, 556, 705
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	16, 92, 98, 101, 113, 123, 380, 636, 682
MseI	TTAA	4 cut(s)	9, 254, 555, 704
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	197, 677
MspR9I	CCNGG	3 cut(s)	389, 418, 456
MvaI	CCWGG	3 cut(s)	389, 418, 456
MwoI	GCNNNNNNNGC	3 cut(s)	284, 336, 494
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	63, 618
NlaIII	CATG	4 cut(s)	70, 130, 402, 592
NlaIV	GGNNCC	2 cut(s)	48, 422
NmuCI	GTSAC	3 cut(s)	199, 522, 604
PfoI	TCCNGGA	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	704
Psp6I	CCWGG	3 cut(s)	387, 416, 454
PspGI	CCWGG	3 cut(s)	387, 416, 454
PspN4I	GGNNCC	2 cut(s)	48, 422
PspPI	GGNCC	1 cut(s)	578
PvuII	CAGCTG	2 cut(s)	197, 677
RsaI	GTAC	3 cut(s)	48, 101, 362
RsaNI	GTAC	3 cut(s)	47, 100, 361
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	9, 254, 555, 704
Sau3AI	GATC	2 cut(s)	63, 618
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	3 cut(s)	389, 418, 456
SduI	GDGCHC	2 cut(s)	541, 588
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	6 cut(s)	72, 168, 301, 515, 556, 705
SsiI	CCGC	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	387, 416, 454
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	205, 613
TasI	AATT	6 cut(s)	72, 168, 301, 515, 556, 705
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	4 cut(s)	9, 254, 555, 704
Tru9I	TTAA	4 cut(s)	9, 254, 555, 704
TscAI	CASTG	2 cut(s)	208, 531
TseFI	GTSAC	3 cut(s)	199, 522, 604
Tsp45I	GTSAC	3 cut(s)	199, 522, 604
TspDTI	ATGAA	3 cut(s)	150, 387, 705
TspRI	CASTG	2 cut(s)	208, 531
VpaK11BI	GGWCC	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	704
XapI	RAATTY	2 cut(s)	168, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.