RLG00000031658

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001932
Physical Location & Seq
Reverse (-)
7155852 .. 7156614
763 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031658

Sequence Viewer

Length: 678 bp
ATGAATTTTGAGAGGGGGTACTTCGATGTGGTTCTGGTCCCATCCGGGCTTCTGATCATGTTGATTTACCACCTCTTCTTCCTCTACAAGTATTTTCATCAACCTCTATCCACATCCATGGGGTATGAAAACAACGACAAGCGAATTTGGGTTGCAAAAATTCTTCAGGGTGACAATGTTAACAGAGGACTTGGTGTGATTTCTTCCAATACAAGTGCAGCCATGACCTTAGCATCAATCTGTTTGACTCTCTCTTCTCTAATCGGAGTTTGGATATCAAATTCTCCCAGCAAGTCCTTCCCAATAGAAATGATCTATGGCAATACGACTCCATCGATGAATTCAATCAAGTATGTCTGCTTGTTGACCTCTTTTCTGCTTGCTTTCTCGTGCTTCGTTCAATCGGCTAGGCACTTTGTCCATTCGAACTACCTATTGAGCACTCCGGGGGCTAGCGATAAAGGGGTTGTGAAGAAGGTGGAGAGAGCAGTTCAAAGAGGAAGTGAATTTTGGTCGCTTGGGCTTAGAGCACTGTATTTTGCTCTAAATTTTCTGCTGTGGTTTTTTGGACCTACACCTATGTTTGTTTCCTCTATCATAATGGTGGTGATTCTGTATTGCCATGATTTTAGGAAGTCGGAATCGGATAATCTCCATGATGTATTATTGCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

226

Amino Acids

25.39

Weight (kDa)

8.87

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 212 2.1e-56 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 7 cut(s) 4, 144, 159, 280, 340, 506, 547
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 345, 401, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
Alw21I GWGCWC 2 cut(s) 443, 532
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 7 cut(s) 4, 144, 159, 280, 340, 506, 547
AspS9I GGNCC 2 cut(s) 37, 569
AsuC2I CCSGG 2 cut(s) 46, 447
AsuHPI GGTGA 2 cut(s) 182, 619
AsuII TTCGAA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 2 cut(s) 37, 569
BauI CACGAG 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 443, 532
BbvI GCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 49, 340
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 46, 447
BfaI CTAG 2 cut(s) 408, 453
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 46, 447
Bme18I GGWCC 2 cut(s) 37, 569
BmgT120I GGNCC 2 cut(s) 37, 569
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 46, 447
BmsI GCATC 1 cut(s) 242
BmtI GCTAGC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 229
Bpu14I TTCGAA 1 cut(s) 425
BpuMI CCSGG 2 cut(s) 46, 447
Bsa29I ATCGAT 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 117, 446
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 117, 446
BseGI GGATG 2 cut(s) 41, 113
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 443, 532
BsiSI CCGG 2 cut(s) 45, 446
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 443, 532
Bsp143I GATC 2 cut(s) 54, 312
Bsp19I CCATGG 1 cut(s) 117
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 456
BspT104I TTCGAA 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 117, 446
BssMI GATC 2 cut(s) 54, 312
BssSI CACGAG 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 2 cut(s) 80, 259
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 381, 454
BstDEI CTNAG 2 cut(s) 229, 524
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 41, 113
BstKTI GATC 2 cut(s) 57, 315
BstMBI GATC 2 cut(s) 54, 312
BstSCI CCNGG 2 cut(s) 44, 445
BstV1I GCAGC 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 41, 113
BtsIMutI CAGTG 1 cut(s) 530
Cac8I GCNNGC 2 cut(s) 381, 454
Cfr13I GGNCC 2 cut(s) 37, 569
ClaI ATCGAT 1 cut(s) 335
Csp6I GTAC 1 cut(s) 19
CviAII CATG 5 cut(s) 58, 118, 223, 623, 656
CviJI RGCY 5 cut(s) 49, 221, 407, 452, 523
CviKI_1 RGCY 5 cut(s) 49, 221, 407, 452, 523
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 2 cut(s) 229, 524
DpnI GATC 2 cut(s) 56, 314
DpnII GATC 2 cut(s) 54, 312
Eam1104I CTCTTC 2 cut(s) 80, 259
EarI CTCTTC 2 cut(s) 80, 259
Eco130I CCWWGG 1 cut(s) 117
Eco32I GATATC 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 37, 569
Eco57I CTGAAG 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 340
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 5 cut(s) 61, 121, 226, 626, 659
FaqI GGGAC 1 cut(s) 23
FatI CATG 5 cut(s) 57, 117, 222, 622, 655
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 28, 100
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 408, 453
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 291
HapII CCGG 2 cut(s) 45, 446
Hin1II CATG 5 cut(s) 61, 121, 226, 626, 659
HincII GTYRAC 2 cut(s) 181, 366
HindII GTYRAC 2 cut(s) 181, 366
HinfI GANTC 4 cut(s) 247, 328, 610, 641
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 45, 446
HphI GGTGA 2 cut(s) 182, 619
Hpy166II GTNNAC 2 cut(s) 181, 366
Hpy188I TCNGA 4 cut(s) 54, 266, 640, 646
Hpy188III TCNNGA 1 cut(s) 675
Hpy8I GTNNAC 2 cut(s) 181, 366
HpyAV CCTTC 2 cut(s) 307, 469
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4V TGCA 2 cut(s) 155, 218
HpyF3I CTNAG 2 cut(s) 229, 524
Hsp92II CATG 5 cut(s) 61, 121, 226, 626, 659
Ksp22I TGATCA 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 54, 312
LpnPI CCDG 5 cut(s) 20, 58, 152, 301, 459
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 408, 453
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 56, 314
MboI GATC 2 cut(s) 54, 312
MboII GAAGA 6 cut(s) 67, 70, 155, 195, 246, 484
MhlI GDGCHC 2 cut(s) 443, 532
MluCI AATT 7 cut(s) 4, 144, 159, 280, 340, 506, 547
MlyI GAGTC 2 cut(s) 241, 322
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 8 cut(s) 6, 83, 92, 114, 179, 379, 491, 601
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 2 cut(s) 116, 602
MspI CCGG 2 cut(s) 45, 446
MspR9I CCNGG 2 cut(s) 46, 447
NciI CCSGG 2 cut(s) 46, 447
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 54, 312
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 5 cut(s) 61, 121, 226, 626, 659
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PfeI GAWTC 2 cut(s) 610, 641
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 2 cut(s) 241, 322
PpsI GAGTC 2 cut(s) 241, 322
PspFI CCCAGC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 37, 569
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 116, 602
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 54, 312
Sau96I GGNCC 2 cut(s) 37, 569
SchI GAGTC 2 cut(s) 241, 322
ScrFI CCNGG 2 cut(s) 46, 447
SduI GDGCHC 2 cut(s) 443, 532
SetI ASST 8 cut(s) 75, 106, 230, 371, 435, 480, 574, 580
SfaNI GCATC 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 425
SinI GGWCC 2 cut(s) 37, 569
SmiMI CAYNNNNRTG 2 cut(s) 116, 602
Sse9I AATT 7 cut(s) 4, 144, 159, 280, 340, 506, 547
SspMI CTAG 2 cut(s) 408, 453
StyD4I CCNGG 2 cut(s) 44, 445
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 534
TaqI TCGA 3 cut(s) 24, 335, 425
TasI AATT 7 cut(s) 4, 144, 159, 280, 340, 506, 547
TfiI GAWTC 2 cut(s) 610, 641
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 17, 86, 141, 353
TspRI CASTG 1 cut(s) 537
VpaK11BI GGWCC 2 cut(s) 37, 569
XapI RAATTY 7 cut(s) 4, 144, 159, 280, 340, 506, 547
XspI CTAG 2 cut(s) 408, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.