Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Forward (+)

88715112 .. 88722744

Gene Structure 7633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTTCTTAAAATGTTCTTCAATCGCGAGTACACCAACACATGGGAGCCAGAGACAATGAATTTTGAGAGGGGATACGTCGATGTGGTTCTGGTCCCATCCGGGCTTCTGATCATGTTGATTTACCACCTCTTCTTCCTCTACAAGTATTTCCATCAACCTCTATCCACATCCATGGGGTATGAAAACAACGACAAGCGAATTTGGGTTGCAAAAATTCTTCAGTATGTCTGCTTGTTGACCTCTTTTCTGCTTGCTTTCTCGTGCTTCGTTCAATCGGCTAGGCACTTTGTCCATTCGAACTACCTATTGAGCACTCCGGGAGCTAGCGATAAAGGGGTTGTGAAGAAGGTGGAGAGAGCAGTTCAAAGAGGAAGTGAATTTTGGTCGCTTGGGCTTAGAGCACTGTATTTTGCTCTAAATTTTCTGCTGTGGTTTTTTGGACCTATACCAATGTTTGTTTACTCTATCATAATGGTGGTGATTCTGTATTGCCATGATTTTAGGAAGTCGGAATCGGATAATCTCCATGATCGACCTCATTTGGTACCCCGCCCATTTGCCCATGCTTCTTTTCTGGCCGACGCTCTCTCCGCCGAGCGTGGGTTTTACGCCTTCGCGCGAGGTGGTGCACGCGCTGGGTGGAGATTCTTTGGGTTTCTTTGGCGGGTACGCAAGACAATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

229

Amino Acids

26.84

Weight (kDa)

9.46

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF599	PF04654	30 - 74	7.4e-08	Protein of unknown function, DUF599
DUF599	PF04654	74 - 170	3.6e-30	Protein of unknown function, DUF599

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	42
AccII	CGCG	4 cut(s)	27, 620, 622, 636
AciI	CCGC	3 cut(s)	553, 594, 667
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	5 cut(s)	61, 201, 216, 380, 421
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	32, 549, 672
AfiI	CCNNNNNNNGG	2 cut(s)	42, 603
AgsI	TTSAA	3 cut(s)	22, 275, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	3 cut(s)	317, 406, 634
Alw26I	GTCTC	1 cut(s)	47
Alw44I	GTGCAC	1 cut(s)	630
AoxI	GGCC	1 cut(s)	579
ApaLI	GTGCAC	1 cut(s)	630
ApoI	RAATTY	5 cut(s)	61, 201, 216, 380, 421
Asp718I	GGTACC	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	622, 638
AspS9I	GGNCC	2 cut(s)	94, 443
AsuC2I	CCSGG	2 cut(s)	103, 321
AsuHPI	GGTGA	1 cut(s)	493
AsuII	TTCGAA	1 cut(s)	299
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	94, 443
BaeGI	GKGCMC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	262
Bbv12I	GWGCWC	3 cut(s)	317, 406, 634
BccI	CCATC	2 cut(s)	106, 162
BciVI	GTATCC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	2 cut(s)	103, 321
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	282, 327
BfuI	GTATCC	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	103, 321
Bme18I	GGWCC	2 cut(s)	94, 443
BmgT120I	GGNCC	2 cut(s)	94, 443
BmiI	GGNNCC	3 cut(s)	48, 96, 549
BmrFI	CCNGG	2 cut(s)	103, 321
BmtI	GCTAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	103, 321
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 603
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	98, 170
BseLI	CCNNNNNNNGG	2 cut(s)	42, 603
BseSI	GKGCMC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	638
Bsh1236I	CGCG	4 cut(s)	27, 620, 622, 636
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	547
BsiHKAI	GWGCWC	3 cut(s)	317, 406, 634
BsiSI	CCGG	2 cut(s)	102, 320
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	42, 603
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	581
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	317, 406, 634
Bsp143I	GATC	2 cut(s)	111, 532
Bsp19I	CCATGG	1 cut(s)	174
Bsp68I	TCGCGA	1 cut(s)	27
BspACI	CCGC	3 cut(s)	553, 594, 667
BspANI	GGCC	1 cut(s)	581
BspFNI	CGCG	4 cut(s)	27, 620, 622, 636
BspLI	GGNNCC	3 cut(s)	48, 96, 549
BspOI	GCTAGC	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	111, 532
BssSI	CACGAG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	255, 328, 634
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	98, 170
BstFNI	CGCG	4 cut(s)	27, 620, 622, 636
BstHHI	GCGC	2 cut(s)	622, 638
BstKTI	GATC	2 cut(s)	114, 535
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	111, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	101, 319
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	4 cut(s)	27, 620, 622, 636
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	98, 170
BtsIMutI	CAGTG	1 cut(s)	404
BtuMI	TCGCGA	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	255, 328, 634
CfoI	GCGC	2 cut(s)	622, 638
Cfr13I	GGNCC	2 cut(s)	94, 443
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	31, 548, 671
CviAII	CATG	6 cut(s)	42, 115, 175, 497, 530, 566
CviJI	RGCY	6 cut(s)	49, 106, 281, 326, 397, 581
CviKI_1	RGCY	6 cut(s)	49, 106, 281, 326, 397, 581
CviQI	GTAC	3 cut(s)	31, 548, 671
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	113, 534
DpnII	GATC	2 cut(s)	111, 532
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	94, 443
Eco57I	CTGAAG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	6 cut(s)	45, 118, 178, 500, 533, 569
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	6 cut(s)	41, 114, 174, 496, 529, 565
FauI	CCCGC	2 cut(s)	560, 660
FbaI	TGATCA	1 cut(s)	111
FokI	GGATG	2 cut(s)	85, 157
FspBI	CTAG	2 cut(s)	282, 327
GlaI	GCGC	2 cut(s)	621, 637
GsaI	CCCAGC	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	2 cut(s)	102, 320
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	622, 638
Hin1II	CATG	6 cut(s)	45, 118, 178, 500, 533, 569
Hin6I	GCGC	2 cut(s)	620, 636
HinP1I	GCGC	2 cut(s)	620, 636
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	484, 515, 648
HpaII	CCGG	2 cut(s)	102, 320
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	4 cut(s)	33, 240, 463, 632
Hpy188I	TCNGA	3 cut(s)	111, 514, 520
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	4 cut(s)	33, 240, 463, 632
Hpy99I	CGWCG	2 cut(s)	83, 587
HpyAV	CCTTC	2 cut(s)	343, 625
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	212, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	45, 118, 178, 500, 533, 569
HspAI	GCGC	2 cut(s)	620, 636
KpnI	GGTACC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 532
LmnI	GCTCC	2 cut(s)	46, 323
LpnPI	CCDG	6 cut(s)	63, 77, 115, 333, 563, 624
MaeI	CTAG	2 cut(s)	282, 327
MaeII	ACGT	1 cut(s)	78
MalI	GATC	2 cut(s)	113, 534
MboI	GATC	2 cut(s)	111, 532
MboII	GAAGA	5 cut(s)	10, 124, 127, 212, 358
MfeI	CAATTG	1 cut(s)	681
MhlI	GDGCHC	3 cut(s)	317, 406, 634
MluCI	AATT	6 cut(s)	61, 201, 216, 380, 421, 681
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	8 cut(s)	63, 140, 149, 171, 253, 365, 549, 617
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	2 cut(s)	173, 476
MspI	CCGG	2 cut(s)	102, 320
MspR9I	CCNGG	2 cut(s)	103, 321
MunI	CAATTG	1 cut(s)	681
MvnI	CGCG	4 cut(s)	27, 620, 622, 636
MwoI	GCNNNNNNNGC	1 cut(s)	593
NciI	CCSGG	2 cut(s)	103, 321
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	111, 532
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	6 cut(s)	45, 118, 178, 500, 533, 569
NlaIV	GGNNCC	3 cut(s)	48, 96, 549
NmeAIII	GCCGAG	1 cut(s)	622
NruI	TCGCGA	1 cut(s)	27
NspV	TTCGAA	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	484, 515, 648
PflMI	CCANNNNNTGG	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	48, 96, 549
PspPI	GGNCC	2 cut(s)	94, 443
RruI	TCGCGA	1 cut(s)	27
RsaI	GTAC	3 cut(s)	32, 549, 672
RsaNI	GTAC	3 cut(s)	31, 548, 671
RseI	CAYNNNNRTG	2 cut(s)	173, 476
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	111, 532
Sau96I	GGNCC	2 cut(s)	94, 443
ScrFI	CCNGG	2 cut(s)	103, 321
SduI	GDGCHC	3 cut(s)	317, 406, 634
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	2 cut(s)	94, 443
SmiMI	CAYNNNNRTG	2 cut(s)	173, 476
Sse9I	AATT	6 cut(s)	61, 201, 216, 380, 421, 681
SsiI	CCGC	3 cut(s)	553, 594, 667
SspMI	CTAG	2 cut(s)	282, 327
StyD4I	CCNGG	2 cut(s)	101, 319
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	81, 299, 535
TasI	AATT	6 cut(s)	61, 201, 216, 380, 421, 681
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	484, 515, 648
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	411
TspDTI	ATGAA	2 cut(s)	74, 198
TspRI	CASTG	1 cut(s)	411
Van91I	CCANNNNNTGG	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	630
VpaK11BI	GGWCC	2 cut(s)	94, 443
XapI	RAATTY	5 cut(s)	61, 201, 216, 380, 421
XspI	CTAG	2 cut(s)	282, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.