FvH4_6g20802

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001932
Physical Location & Seq
Reverse (-)
14336388 .. 14337532
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20802.t1

Sequence Viewer

Length: 702 bp
ATGGATTTTAAGAAGGAGTACTTGGATGCTGTTTTGGTCACAGCTGGGTTGCTGTTCATGTTTCTTTACCACCTCTTCCTCCTCTACCAATACCTCCATAACCCTATCAAAACATCCATTGGTTACGAAAACAAAGACAAAGAAACTTGGGTTGAAAAGATTCTGAACGTCCCTGAGGATGCTAATGATGTTGCAGTTAAAGACAAAGTCAGCACAGGACTTGGTGTGATTTACTCAAACACAAGTGCAACCATGACCTTAGCATCAATCTCCTTAACTCTCTGCGCTGTAATCGGAGTCTGGATTTCAAGTTCCACCAATAAGTTTGTGCCACTGGAAATGGTTTACGGCAACATAAGTGAGTCAATCATTTCTATCAAGTACTTATGCCTGTTGAGCTGTCTTCTCCTTGCATTTTCGTTCTTCGTTCAATCTGCAAGGCACTTTATCCATTCAAACTACCTATTGAGCACTCCGGGAGCCACAGAGGAAGAGGATGTGGAAAAGGTGCAGAAAGCGGTCGAAAGAGGCAGTATATTTTGGTCATTGGGACTCAGATCACTATATTTTGCTCTTAATTTTATGCTGTGGTTCTTCGGGCCTATACCAATGTGTGCTTGCTCTATTGTAATGGTATTCGTCCTGTACTGCCATGATTTGAGGAAAGAGTCCAAACCCTCGGATAATCGAAAGAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

234

Amino Acids

26.38

Weight (kDa)

6.51

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 222 9.5e-54 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 518
AfaI GTAC 3 cut(s) 20, 383, 647
AgsI TTSAA 4 cut(s) 155, 309, 431, 456
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 2 cut(s) 44, 399
AluI AGCT 2 cut(s) 44, 399
Alw21I GWGCWC 1 cut(s) 473
AoxI GGCC 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 1 cut(s) 477
AxyI CCTNAGG 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 473
BceAI ACGGC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 477
BmcAI AGTACT 2 cut(s) 20, 383
Bme1390I CCNGG 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 16, 169, 272
BpiI GAAGAC 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 678
Bse1I ACTGG 1 cut(s) 339
Bse21I CCTNAGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 678
BseGI GGATG 4 cut(s) 31, 113, 184, 502
BseMII CTCAG 2 cut(s) 165, 568
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 1 cut(s) 601
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 2 cut(s) 155, 564
BsmFI GGGAC 2 cut(s) 155, 564
BsnI GGCC 1 cut(s) 601
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 557
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 166, 567
BspLI GGNNCC 1 cut(s) 481
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 678
BssMI GATC 1 cut(s) 557
Bst6I CTCTTC 2 cut(s) 80, 486
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 3 cut(s) 174, 259, 554
BstF5I GGATG 4 cut(s) 31, 113, 184, 502
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 1 cut(s) 560
BstMBI GATC 1 cut(s) 557
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 601
BtsCI GGATG 4 cut(s) 31, 113, 184, 502
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 619
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 3 cut(s) 19, 382, 646
CviAII CATG 3 cut(s) 58, 253, 653
CviJI RGCY 4 cut(s) 44, 399, 482, 601
CviKI_1 RGCY 4 cut(s) 44, 399, 482, 601
CviQI GTAC 3 cut(s) 19, 382, 646
DdeI CTNAG 3 cut(s) 174, 259, 554
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
Eam1104I CTCTTC 2 cut(s) 80, 486
EarI CTCTTC 2 cut(s) 80, 486
Eco81I CCTNAGG 1 cut(s) 174
FaeI CATG 3 cut(s) 61, 256, 656
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 2 cut(s) 155, 564
FatI CATG 3 cut(s) 57, 252, 652
FokI GGATG 4 cut(s) 38, 100, 191, 509
GlaI GCGC 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 476
HhaI GCGC 1 cut(s) 287
Hin1II CATG 3 cut(s) 61, 256, 656
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 5 cut(s) 160, 297, 362, 552, 668
HpaII CCGG 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 165, 296, 557, 682
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 7, 688
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 5 cut(s) 194, 248, 413, 437, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 3 cut(s) 174, 259, 554
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 61, 256, 656
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 1 cut(s) 557
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 8 cut(s) 30, 186, 201, 286, 320, 404, 489, 656
LweI GCATC 3 cut(s) 16, 169, 272
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 37, 122
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 5 cut(s) 67, 395, 415, 503, 586
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 1 cut(s) 577
MlyI GAGTC 4 cut(s) 306, 371, 546, 677
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 4 cut(s) 9, 198, 275, 576
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 477
NdeII GATC 1 cut(s) 557
NlaIII CATG 3 cut(s) 61, 256, 656
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 475
PleI GAGTC 4 cut(s) 305, 370, 546, 676
PpsI GAGTC 4 cut(s) 305, 370, 546, 676
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 599
PsyI GACNNNGTC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 20, 383, 647
RsaNI GTAC 3 cut(s) 19, 382, 646
SaqAI TTAA 4 cut(s) 9, 198, 275, 576
Sau3AI GATC 1 cut(s) 557
Sau96I GGNCC 1 cut(s) 599
ScaI AGTACT 2 cut(s) 20, 383
SchI GAGTC 4 cut(s) 306, 371, 546, 677
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 473
SetI ASST 8 cut(s) 46, 75, 96, 171, 260, 401, 465, 510
SfaNI GCATC 3 cut(s) 16, 169, 272
Sse9I AATT 1 cut(s) 577
SsiI CCGC 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 475
TaiI ACGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 522, 688
TasI AATT 1 cut(s) 577
TatI WGTACW 3 cut(s) 18, 381, 645
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 4 cut(s) 9, 198, 275, 576
Tru9I TTAA 4 cut(s) 9, 198, 275, 576
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 339
Tth111I GACNNNGTC 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 159
ZrmI AGTACT 2 cut(s) 20, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.