Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406601.1

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Reverse (-)

541 .. 1302

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaattttgagagggggtacatcgatgtggttctggtcccatctgggcttctgatcatgttgatttaccacctcttcttcctctacaagtatttccatcaacctctatccacatccatggggtatgaaaacaacgacaagcgagtttgggttgcaaaaattcttcaggtgcagggtgacaatgttaacagaggacttggtgtgatttcttccaatacaagtgcagccatgaccttagcatcaatctgtttgactctctcttctctaatcggagtttggatagcaaattctcccagcaagtccttcccaatagaagtgttctatggcaatacgactccatcgatgaattcaatcaagtatatctgcttgttgacctcttttctgcttgctttctcgtgcttcgttcaatcggctaggcactttgtccattcgaactacctattgagcactccgggggctagcgataaaggggttgtgaagaaggtggaaagagcagttcaaagaggaagtgaattttggtcgcttgggcttagagcactgtattttgctctaaactttctgctgtggttttttggacctatacctatgtttgtttcctctatcataatggtggtgattctgtattgccatgattttaggaagttggaatcggataatctccatgatgtattattgctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

227

Amino Acids

25.6

Weight (kDa)

8.87

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	5 cut(s)	4, 159, 286, 346, 512
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	351, 407, 500
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
Alw21I	GWGCWC	2 cut(s)	449, 538
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	5 cut(s)	4, 159, 286, 346, 512
AspS9I	GGNCC	2 cut(s)	37, 575
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	188, 625
AsuII	TTCGAA	1 cut(s)	431
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	37, 575
BauI	CACGAG	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	449, 538
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	49, 105, 346
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	453
BfaI	CTAG	2 cut(s)	414, 459
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	2 cut(s)	37, 575
BmgT120I	GGNCC	2 cut(s)	37, 575
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	248
BmtI	GCTAGC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	453
Bsa29I	ATCGAT	2 cut(s)	24, 341
BsaJI	CCNNGG	2 cut(s)	117, 452
BseCI	ATCGAT	2 cut(s)	24, 341
BseDI	CCNNGG	2 cut(s)	117, 452
BseGI	GGATG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	191, 243
BshVI	ATCGAT	2 cut(s)	24, 341
BsiHKAI	GWGCWC	2 cut(s)	449, 538
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	449, 538
Bsp143I	GATC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	117
BspDI	ATCGAT	2 cut(s)	24, 341
BspLI	GGNNCC	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	462
BspT104I	TTCGAA	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	117, 452
BssMI	GATC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	80, 265
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	387, 460
BstDEI	CTNAG	2 cut(s)	235, 530
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	118
Bsu15I	ATCGAT	2 cut(s)	24, 341
BsuTUI	ATCGAT	2 cut(s)	24, 341
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	387, 460
Cfr13I	GGNCC	2 cut(s)	37, 575
ClaI	ATCGAT	2 cut(s)	24, 341
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	5 cut(s)	58, 118, 229, 629, 662
CviJI	RGCY	5 cut(s)	49, 227, 413, 458, 529
CviKI_1	RGCY	5 cut(s)	49, 227, 413, 458, 529
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	235, 530
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	80, 265
EarI	CTCTTC	2 cut(s)	80, 265
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	37, 575
Eco57I	CTGAAG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	5 cut(s)	61, 121, 232, 632, 665
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	5 cut(s)	57, 117, 228, 628, 661
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	2 cut(s)	414, 459
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	5 cut(s)	61, 121, 232, 632, 665
HincII	GTYRAC	2 cut(s)	187, 372
HindII	GTYRAC	2 cut(s)	187, 372
HinfI	GANTC	4 cut(s)	253, 334, 616, 647
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	2 cut(s)	188, 625
Hpy166II	GTNNAC	2 cut(s)	187, 372
Hpy188I	TCNGA	3 cut(s)	54, 272, 652
Hpy188III	TCNNGA	1 cut(s)	681
Hpy8I	GTNNAC	2 cut(s)	187, 372
HpyAV	CCTTC	2 cut(s)	313, 475
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	155, 172, 224
HpyF3I	CTNAG	2 cut(s)	235, 530
Hsp92II	CATG	5 cut(s)	61, 121, 232, 632, 665
Ksp22I	TGATCA	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	20, 30, 152, 158, 307, 465
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	2 cut(s)	414, 459
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	6 cut(s)	67, 70, 155, 201, 252, 490
MhlI	GDGCHC	2 cut(s)	449, 538
MluCI	AATT	5 cut(s)	4, 159, 286, 346, 512
MlyI	GAGTC	2 cut(s)	247, 328
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	6, 83, 92, 114, 185, 385, 497, 607
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	3 cut(s)	26, 116, 608
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	453
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	54
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	5 cut(s)	61, 121, 232, 632, 665
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	616, 647
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	247, 328
PpsI	GAGTC	2 cut(s)	247, 328
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 575
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	3 cut(s)	26, 116, 608
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	37, 575
SchI	GAGTC	2 cut(s)	247, 328
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	449, 538
SetI	ASST	9 cut(s)	75, 106, 171, 236, 377, 441, 486, 580, 586
SfaNI	GCATC	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	2 cut(s)	37, 575
SmiMI	CAYNNNNRTG	3 cut(s)	26, 116, 608
Sse9I	AATT	5 cut(s)	4, 159, 286, 346, 512
SspMI	CTAG	2 cut(s)	414, 459
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	3 cut(s)	24, 341, 431
TasI	AATT	5 cut(s)	4, 159, 286, 346, 512
TfiI	GAWTC	2 cut(s)	616, 647
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	17, 141, 359
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	37, 575
XapI	RAATTY	5 cut(s)	4, 159, 286, 346, 512
XspI	CTAG	2 cut(s)	414, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.