Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002711.1

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Forward (+)

99539 .. 100322

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002711.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggattttgagaaagagtacttggatgctgttttggtcacagctgggcttctgttcatgtttctttaccacctcttcctcctgtaccaatacatccaggatgccaccaaaacatccatcggttacgaaaacaaagacaaagaaacttgggttcaaaagattttgaaggtcactgagggtactaatgatgatgcagttggggacaatgttagcacaggacttagtgtgatttcctcaaacacaagcgcaaccatgaccttagcgtcaatctccttaactctctgcgctgttatcggagtctggattgcaagttcaaccaataagttcttcccattagaaatggtttacggcaacacaagcgagtcaatcatttctatcaagtacttatgcctgttgagctgctttctccttgccttttcgttcttcgttcaatctgcgaggcactttgtccattcaaactacctattgagcactccaggagccacgaaagaagaggatgtggaaaaagtgcagaaagcggttgaaagaggaagtatcttttggtcattgggactcagagcactatattttgctcttaattttctgctgtggttcttcgggcctataccaatgtgtgcttgctctattgtaatggtatttgtcctgtactgccatgatttcaggaaggactcgaaacagtcagatagtcgaaagaagggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

233

Amino Acids

26.24

Weight (kDa)

6.08

Isoelectric Point (pI)

23.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	262
AciI	CCGC	1 cut(s)	518
AfaI	GTAC	5 cut(s)	20, 86, 181, 383, 647
AgsI	TTSAA	6 cut(s)	155, 166, 315, 431, 456, 524
AjnI	CCWGG	2 cut(s)	96, 475
AjuI	GAANNNNNNNTTGG	5 cut(s)	37, 311, 343, 523, 555
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	2 cut(s)	44, 399
AluI	AGCT	2 cut(s)	44, 399
Alw21I	GWGCWC	2 cut(s)	473, 562
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	248, 287
AspS9I	GGNCC	1 cut(s)	599
Bbv12I	GWGCWC	2 cut(s)	473, 562
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	2 cut(s)	98, 477
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
BmcAI	AGTACT	2 cut(s)	20, 383
Bme1390I	CCNGG	2 cut(s)	98, 477
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	98, 477
BmsI	GCATC	3 cut(s)	16, 91, 181
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	98, 477
BseGI	GGATG	5 cut(s)	31, 93, 106, 113, 502
BseMII	CTCAG	2 cut(s)	165, 568
BseXI	GCAGC	1 cut(s)	386
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	473, 562
BslFI	GGGAC	2 cut(s)	215, 564
BsmFI	GGGAC	2 cut(s)	215, 564
BsnI	GGCC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	473, 562
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	166, 567
BspLI	GGNNCC	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	98, 477
Bst4CI	ACNGT	1 cut(s)	678
Bst6I	CTCTTC	2 cut(s)	80, 486
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	4 cut(s)	174, 221, 259, 554
BstF5I	GGATG	5 cut(s)	31, 93, 106, 113, 502
BstHHI	GCGC	2 cut(s)	248, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 396
BstNI	CCWGG	2 cut(s)	98, 477
BstSCI	CCNGG	2 cut(s)	96, 475
BstV1I	GCAGC	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	601
BtsCI	GGATG	5 cut(s)	31, 93, 106, 113, 502
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	2 cut(s)	248, 287
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	5 cut(s)	19, 85, 180, 382, 646
CviAII	CATG	3 cut(s)	58, 253, 653
CviJI	RGCY	5 cut(s)	44, 49, 399, 482, 601
CviKI_1	RGCY	5 cut(s)	44, 49, 399, 482, 601
CviQI	GTAC	5 cut(s)	19, 85, 180, 382, 646
DdeI	CTNAG	4 cut(s)	174, 221, 259, 554
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	80, 486
EarI	CTCTTC	2 cut(s)	80, 486
EcoRII	CCWGG	2 cut(s)	96, 475
FaeI	CATG	3 cut(s)	61, 256, 656
FaiI	YATR	6 cut(s)	59, 254, 388, 565, 605, 654
FaqI	GGGAC	2 cut(s)	215, 564
FatI	CATG	3 cut(s)	57, 252, 652
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	5 cut(s)	38, 80, 100, 113, 509
Fsp4HI	GCNGC	1 cut(s)	400
GlaI	GCGC	2 cut(s)	247, 286
GluI	GCNGC	1 cut(s)	400
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	601
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	2 cut(s)	248, 287
Hin1II	CATG	3 cut(s)	61, 256, 656
Hin6I	GCGC	2 cut(s)	246, 285
HinP1I	GCGC	2 cut(s)	246, 285
HinfI	GANTC	4 cut(s)	297, 362, 552, 668
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	296, 557, 682
Hpy188III	TCNNGA	2 cut(s)	301, 661
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	160, 658, 688
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4V	TGCA	3 cut(s)	194, 308, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 396
HpyF3I	CTNAG	4 cut(s)	174, 221, 259, 554
Hsp92II	CATG	3 cut(s)	61, 256, 656
HspAI	GCGC	2 cut(s)	246, 285
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	3 cut(s)	16, 91, 181
MaeIII	GTNAC	3 cut(s)	37, 122, 169
MboII	GAAGA	5 cut(s)	67, 319, 415, 503, 586
MhlI	GDGCHC	2 cut(s)	473, 562
MluCI	AATT	1 cut(s)	577
MlyI	GAGTC	4 cut(s)	306, 371, 546, 662
MnlI	CCTC	7 cut(s)	83, 89, 169, 244, 432, 487, 521
MseI	TTAA	2 cut(s)	275, 576
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	98, 477
MvaI	CCWGG	2 cut(s)	98, 477
MwoI	GCNNNNNNNGC	2 cut(s)	357, 396
NlaIII	CATG	3 cut(s)	61, 256, 656
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	2 cut(s)	37, 169
PfoI	TCCNGGA	2 cut(s)	96, 475
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	4 cut(s)	305, 370, 546, 662
PpsI	GAGTC	4 cut(s)	305, 370, 546, 662
Psp6I	CCWGG	2 cut(s)	96, 475
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	2 cut(s)	96, 475
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	5 cut(s)	20, 86, 181, 383, 647
RsaNI	GTAC	5 cut(s)	19, 85, 180, 382, 646
SaqAI	TTAA	2 cut(s)	275, 576
SatI	GCNGC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	599
ScaI	AGTACT	2 cut(s)	20, 383
SchI	GAGTC	4 cut(s)	306, 371, 546, 662
ScrFI	CCNGG	2 cut(s)	98, 477
SduI	GDGCHC	2 cut(s)	473, 562
SetI	ASST	6 cut(s)	46, 75, 171, 260, 401, 465
SfaNI	GCATC	3 cut(s)	16, 91, 181
Sse9I	AATT	1 cut(s)	577
SsiI	CCGC	1 cut(s)	518
StyD4I	CCNGG	2 cut(s)	96, 475
TaaI	ACNGT	1 cut(s)	678
TaqI	TCGA	2 cut(s)	671, 688
TasI	AATT	1 cut(s)	577
TatI	WGTACW	3 cut(s)	18, 381, 645
Tru1I	TTAA	2 cut(s)	275, 576
Tru9I	TTAA	2 cut(s)	275, 576
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	37, 169
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	2 cut(s)	37, 169
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	178
ZrmI	AGTACT	2 cut(s)	20, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.