Rroxscaffold_1G00066700

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001932
Physical Location & Seq
Forward (+)
88210065 .. 88213055
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066700.1

Sequence Viewer

Length: 567 bp
ATGAATTTTGAGAGGGGATACGTCGATGTGGTTCTGGTCCCATCCGGGCTTCTGATCATGTTGATTTACCACCTCTTCTTCCTCTACAAGTATTTCCATCAACCTCTATCCACATCCATGGGGTATGAAAACAACGACAAGCGAATTTGGGTTGCAAAAATTCTTCAGTATGTCTGCTTGTTGACCTCTTTTCTGCTTGCTTTCTCGTGCTTCGTTCAATCGGCTAGGCACTTTGTCCATTCGAACTACCTATTGAGCACTCCGGGAGCTAGCGATAAAGGGGTTGTGAAGAAGGTGGAGAGAGCAGTTCAAAGAGGAAGTGAATTTTGGTCGCTTGGGCTTAGAGCACTGTATTTTGCTCTAAATTTTCTGCTGTGGTTTTTTGGACCTATACCAATGTTTGTTTACTCTATCATAATGGTGGTGATTCTGTATTGCCATGATTTTAGGAAGTCGGAATCGGATAATCTCCATGATCGTGGGTTTTACGCCTTCGCGCGAGGTGGTGCACGCGCTGGGTGGAGATTCTTTGGGTTTCTTTGGCGGGTACGCAAGACAATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

188

Amino Acids

22.03

Weight (kDa)

9.61

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 55 5.4e-08 Protein of unknown function, DUF599
DUF599 PF04654 55 - 151 2.2e-30 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 497, 499, 513
AciI CCGC 1 cut(s) 544
AcsI RAATTY 5 cut(s) 4, 144, 159, 323, 364
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 549
AgsI TTSAA 2 cut(s) 218, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw21I GWGCWC 3 cut(s) 260, 349, 511
Alw44I GTGCAC 1 cut(s) 507
ApaLI GTGCAC 1 cut(s) 507
ApoI RAATTY 5 cut(s) 4, 144, 159, 323, 364
AspLEI GCGC 2 cut(s) 499, 515
AspS9I GGNCC 2 cut(s) 37, 386
AsuC2I CCSGG 2 cut(s) 46, 264
AsuHPI GGTGA 1 cut(s) 436
AsuII TTCGAA 1 cut(s) 242
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 2 cut(s) 37, 386
BaeGI GKGCMC 1 cut(s) 511
BauI CACGAG 1 cut(s) 205
Bbv12I GWGCWC 3 cut(s) 260, 349, 511
BccI CCATC 2 cut(s) 49, 105
BciVI GTATCC 1 cut(s) 11
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 46, 264
BfaI CTAG 2 cut(s) 225, 270
BfuI GTATCC 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 46, 264
Bme18I GGWCC 2 cut(s) 37, 386
BmgT120I GGNCC 2 cut(s) 37, 386
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 46, 264
BmtI GCTAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 46, 264
BsaJI CCNNGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 41, 113
BseSI GKGCMC 1 cut(s) 511
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 3 cut(s) 497, 499, 513
BsiHKAI GWGCWC 3 cut(s) 260, 349, 511
BsiSI CCGG 2 cut(s) 45, 263
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 3 cut(s) 260, 349, 511
Bsp143I GATC 2 cut(s) 54, 475
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 544
BspFNI CGCG 3 cut(s) 497, 499, 513
BspLI GGNNCC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 54, 475
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 198, 271, 511
BstDEI CTNAG 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 41, 113
BstFNI CGCG 3 cut(s) 497, 499, 513
BstHHI GCGC 2 cut(s) 499, 515
BstKTI GATC 2 cut(s) 57, 478
BstMBI GATC 2 cut(s) 54, 475
BstSCI CCNGG 2 cut(s) 44, 262
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 3 cut(s) 497, 499, 513
BstXI CCANNNNNNTGG 2 cut(s) 118, 479
BsuI GTATCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 41, 113
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 3 cut(s) 198, 271, 511
CfoI GCGC 2 cut(s) 499, 515
Cfr13I GGNCC 2 cut(s) 37, 386
Csp6I GTAC 1 cut(s) 548
CviAII CATG 4 cut(s) 58, 118, 440, 473
CviJI RGCY 4 cut(s) 49, 224, 269, 340
CviKI_1 RGCY 4 cut(s) 49, 224, 269, 340
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 1 cut(s) 341
DpnI GATC 2 cut(s) 56, 477
DpnII GATC 2 cut(s) 54, 475
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 37, 386
Eco57I CTGAAG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 4 cut(s) 61, 121, 443, 476
FaiI YATR 8 cut(s) 59, 119, 126, 171, 392, 416, 441, 474
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 57, 117, 439, 472
FauI CCCGC 1 cut(s) 537
FbaI TGATCA 1 cut(s) 54
FokI GGATG 2 cut(s) 28, 100
FspBI CTAG 2 cut(s) 225, 270
GlaI GCGC 2 cut(s) 498, 514
GsaI CCCAGC 1 cut(s) 519
HapII CCGG 2 cut(s) 45, 263
HhaI GCGC 2 cut(s) 499, 515
Hin1II CATG 4 cut(s) 61, 121, 443, 476
Hin6I GCGC 2 cut(s) 497, 513
HinP1I GCGC 2 cut(s) 497, 513
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 3 cut(s) 427, 458, 525
HpaII CCGG 2 cut(s) 45, 263
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 3 cut(s) 183, 406, 509
Hpy188I TCNGA 3 cut(s) 54, 457, 463
Hpy8I GTNNAC 3 cut(s) 183, 406, 509
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 286, 502
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 155, 509
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 4 cut(s) 61, 121, 443, 476
HspAI GCGC 2 cut(s) 497, 513
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 54, 475
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 4 cut(s) 20, 58, 276, 501
MaeI CTAG 2 cut(s) 225, 270
MaeII ACGT 1 cut(s) 21
MalI GATC 2 cut(s) 56, 477
MboI GATC 2 cut(s) 54, 475
MboII GAAGA 4 cut(s) 67, 70, 155, 301
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 3 cut(s) 260, 349, 511
MluCI AATT 6 cut(s) 4, 144, 159, 323, 364, 558
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 7 cut(s) 6, 83, 92, 114, 196, 308, 494
MslI CAYNNNNRTG 3 cut(s) 116, 419, 477
MspI CCGG 2 cut(s) 45, 263
MspR9I CCNGG 2 cut(s) 46, 264
MunI CAATTG 1 cut(s) 558
MvnI CGCG 3 cut(s) 497, 499, 513
NciI CCSGG 2 cut(s) 46, 264
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 54, 475
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 4 cut(s) 61, 121, 443, 476
NlaIV GGNNCC 1 cut(s) 39
NspV TTCGAA 1 cut(s) 242
PfeI GAWTC 3 cut(s) 427, 458, 525
PfoI TCCNGGA 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 37, 386
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 3 cut(s) 116, 419, 477
Sau3AI GATC 2 cut(s) 54, 475
Sau96I GGNCC 2 cut(s) 37, 386
ScrFI CCNGG 2 cut(s) 46, 264
SduI GDGCHC 3 cut(s) 260, 349, 511
SetI ASST 9 cut(s) 24, 75, 106, 188, 252, 271, 297, 391, 505
SfuI TTCGAA 1 cut(s) 242
SinI GGWCC 2 cut(s) 37, 386
SmiMI CAYNNNNRTG 3 cut(s) 116, 419, 477
Sse9I AATT 6 cut(s) 4, 144, 159, 323, 364, 558
SsiI CCGC 1 cut(s) 544
SspMI CTAG 2 cut(s) 225, 270
StyD4I CCNGG 2 cut(s) 44, 262
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 351
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 24, 242
TasI AATT 6 cut(s) 4, 144, 159, 323, 364, 558
TfiI GAWTC 3 cut(s) 427, 458, 525
TscAI CASTG 1 cut(s) 354
TspDTI ATGAA 2 cut(s) 17, 141
TspRI CASTG 1 cut(s) 354
VneI GTGCAC 1 cut(s) 507
VpaK11BI GGWCC 2 cut(s) 37, 386
XapI RAATTY 5 cut(s) 4, 144, 159, 323, 364
XspI CTAG 2 cut(s) 225, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.