Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001932

Physical Location & Seq

Genomic Coordinates Reverse (-)

59914181 .. 59915313

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAAGCAACCACAGCATTGTTGACGACTCGGATGGATCATCACATGGAAAGAAGTCTCGCATCATGTCCTTCCATTCCAAGGACCAATGGAAGACCCACTTCACTGCCTCTAAGCAAACTAACAAGCTGATTGTGATTGATTTCACGGCAACATGGTGCGGACCTTGTCGATCAATGGAGCCAGCCTTGAAAGAGTATGCTGATAAGTACACTGACGTCGAGTTTGTGAAGCTTGATGTGGACGAGTTACCGGATGTGGCGATGGAGTTTGGGGTGCAGGCAATGCCTTCCTTTCTGTTTATTAAGAAAGGAGAAGTGATTGATAGAGTTGTCGGGGCCAGGAAGGAGGAACTCCAGAAGAAGATTGAGAAACACAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

128

Amino Acids

14.59

Weight (kDa)

6.96

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	36 - 125	2.3e-28	Thioredoxin
Thioredoxin_2	PF13098	39 - 121	1.6e-08	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08421 FvH4_3g08430 FvH4_3g08430 FvH4_3g08440 FvH4_3g08440 FvH4_6g20802
malus_domestica	MD05G1309000.v1.1 MD05G1309100.v1.1 MD05G1309200.v1.1 MD05G1309300.v1.1 MD10G1287700.v1.1 MD10G1287800.v1.1
prunus_persica	Prupe.4G054000_v2.0.a1 Prupe.4G054100_v2.0.a1
pyrus_communis	pycom10g24070
rosa_chinensis	RchiOBHm_Chr5g0009391 RchiOBHm_Chr5g0009431 RchiOBHm_Chr5g0009441
rosa_laevigata	RLG00000031658 RLG00000031661 RLG00000031662
rosa_multiflora	Rmu_co8406601.1_g000001 Rmu_sc0002711.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066680 Rroxscaffold_1G00066690 Rroxscaffold_1G00066700 Rroxscaffold_1G00067380 Rroxscaffold_1G00067400
rosa_rugosa	Rorug04G0442500 Rorug04G0442600 Rorug04G0443100 Rorug04G0443200
rosa_samantha	Rh5AG073500 Rh5AG073800 Rh5AG074000 Rh5AG074100 Rh5BG069600 Rh5BG069800 Rh5CG082000 Rh5CG082200 Rh5CG082300 Rh5DG069900 Rh5DG070100 Rh5DG070200
rosa_wichuraiana	Rw5G006840 Rw5G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	130, 235
AluI	AGCT	2 cut(s)	130, 235
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	339
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	3 cut(s)	85, 164, 339
AvaII	GGWCC	2 cut(s)	85, 164
BbsI	GAAGAC	1 cut(s)	101
BccI	CCATC	2 cut(s)	29, 259
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	2 cut(s)	85, 164
BmgT120I	GGNCC	3 cut(s)	85, 164, 339
BmiI	GGNNCC	2 cut(s)	183, 340
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	40, 262
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	38, 173
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	183, 340
BspPI	GGATC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	38, 173
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	186, 282
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	40, 262
BstKTI	GATC	2 cut(s)	41, 176
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	38, 173
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 286
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	40, 262
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 213
Cac8I	GCNNGC	2 cut(s)	186, 282
Cfr13I	GGNCC	3 cut(s)	85, 164, 339
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	47, 67, 156
CviJI	RGCY	5 cut(s)	130, 184, 188, 235, 341
CviKI_1	RGCY	5 cut(s)	130, 184, 188, 235, 341
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	40, 175
DpnII	GATC	2 cut(s)	38, 173
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	85, 164
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	50, 70, 159
FaiI	YATR	4 cut(s)	48, 68, 157, 201
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	3 cut(s)	46, 66, 155
FokI	GGATG	2 cut(s)	47, 269
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	50, 70, 159
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	25, 213, 244
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	3 cut(s)	25, 213, 244
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	82, 300, 340
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 286
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	50, 70, 159
Kzo9I	GATC	2 cut(s)	38, 173
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	7 cut(s)	198, 266, 267, 328, 355, 364, 371
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	40, 175
MboI	GATC	2 cut(s)	38, 173
MboII	GAAGA	3 cut(s)	106, 373, 376
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	121, 343
MseI	TTAA	1 cut(s)	306
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	15, 286
NdeII	GATC	2 cut(s)	38, 173
NlaIII	CATG	3 cut(s)	50, 70, 159
NlaIV	GGNNCC	2 cut(s)	183, 340
PflFI	GACNNNGTC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	183, 340
PspPI	GGNCC	3 cut(s)	85, 164, 339
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	38, 173
Sau96I	GGNCC	3 cut(s)	85, 164, 339
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	343
SetI	ASST	4 cut(s)	132, 169, 222, 237
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	2 cut(s)	85, 164
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	172, 222
TasI	AATT	1 cut(s)	382
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	112, 220
TspRI	CASTG	2 cut(s)	112, 220
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	85, 164
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.