Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

3064711 .. 3067858

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCACAAGAGGCAAGTTCACAGGTGGGAGTGTTCAGGAAGTTCAAACCTCACATCCTCATGGTTTTAGCTCAAATGGGCTACACATTTCTATATTTTATCACAGAAGCTTCCTTCAACCATGGAATGAACCCTCATGTCTACATTACTTATCGGCATATTGTTTCTGGTGTAGTGATGCTCCCTTTTGCCTATTTTCTTGAAAGAAAAGAAAGGCCAAAGCTCACAGTTGCCCTTTTCTTGGAACTTTTTGTTCTTTCTCTTCTAGGGGTAGGTTTGACTCTAAACATGTACTTTGCAAGCTTAAGATACACCTCTCCAACCTTCCTAGCATCAATGGTCAACACAATAGCTTCTGTCACTTTTGTAATTGCCGTTGCTCTCAGGTTGGAGGCTCTTAATCTTCGAAATCCTCGTGGGTTGGCAAAAGTTTTGGGCACCCTAGTCTCTTTAGCCGGAGTAATGACCATGACTTTGTACAAAGGACCTACTGTGAGAAATCTATGGAGTCCACTAATCCATATTGAAGGAAAATCCTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTCACTGTTTGTAGCTGCATAACTTGGTCTATTTGGTACATTATGCAGGCAATCACATTGAAAAGATATCCTGCACAGCTGTCACTGACTACATGGATGAGCTTCATAGGGGCAGCACAATCAGCTGTATTCACTGTGTGTATTGAATATAAACGAGCTGCTTGGACCGTTGGATTCAACATTGACCTCTGGTCCATTCTGTATGCTGGAGTGGTGTGCTCTGGTCTAATTATCTTCATTCAACTATGGTGCACAGAAGAAAAAGGACCGGTCTTCGTGACCATGTTCAATCCTGTTTCAACAATCTTAGTGGCAATTCTAGCCTACTTTGTGCTTGGTGAAAGACTTTACATCGGCAGCATTTTAGGGGCAGCTATTGTCATTGTTGGCCTATACTTGCTGTTGTGGGGCAAAGAAGGCGATGAAGTTTACATCATTAAGTCTGAAGACTCTCCATCGTATCAGACATACGAAGAAGAGAAAGATGACAGAATACGAACAATTACTTCAGTCAAGAAGGATGCTTTACATGGTGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

371

Amino Acids

41.54

Weight (kDa)

8.81

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 157	2.6e-09	EamA-like transporter family
EamA	PF00892	187 - 307	1.9e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	141
AcuI	CTGAAG	2 cut(s)	1035, 1062
AdeI	CACNNNGTG	1 cut(s)	708
AfaI	GTAC	3 cut(s)	293, 479, 608
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	288
AgeI	ACCGGT	1 cut(s)	838
AhdI	GACNNNNNGTC	1 cut(s)	760
Alw21I	GWGCWC	2 cut(s)	791, 824
Alw26I	GTCTC	1 cut(s)	451
Alw44I	GTGCAC	1 cut(s)	820
AoxI	GGCC	2 cut(s)	215, 958
ApaLI	GTGCAC	1 cut(s)	820
ApeKI	GCWGC	5 cut(s)	585, 683, 728, 927, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AsiGI	ACCGGT	1 cut(s)	838
AspS9I	GGNCC	4 cut(s)	485, 735, 762, 836
AsuHPI	GGTGA	1 cut(s)	920
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	4 cut(s)	485, 735, 762, 836
BaeGI	GKGCMC	2 cut(s)	440, 824
BanI	GGYRCC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	835, 1023
Bbv12I	GWGCWC	2 cut(s)	791, 824
BbvI	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BccI	CCATC	2 cut(s)	548, 1033
BceAI	ACGGC	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	4 cut(s)	266, 329, 443, 890
BfrI	CTTAAG	1 cut(s)	304
BisI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
BlsI	GCNGC	5 cut(s)	587, 685, 730, 929, 943
Bme18I	GGWCC	4 cut(s)	485, 735, 762, 836
BmeRI	GACNNNNNGTC	1 cut(s)	760
BmgT120I	GGNCC	4 cut(s)	485, 735, 762, 836
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	3 cut(s)	168, 341, 1081
BpiI	GAAGAC	2 cut(s)	835, 1023
BpmI	CTGGAG	1 cut(s)	798
Bpu14I	TTCGAA	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	838
Bse1I	ACTGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	4 cut(s)	54, 540, 672, 1096
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	557
BseSI	GKGCMC	2 cut(s)	440, 824
BseXI	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	217, 960
BshNI	GGYRCC	1 cut(s)	437
BshTI	ACCGGT	1 cut(s)	838
BsiHKAI	GWGCWC	2 cut(s)	791, 824
BsiSI	CCGG	2 cut(s)	456, 839
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	217, 960
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	440, 791, 824
Bsp1407I	TGTACA	1 cut(s)	477
Bsp19I	CCATGG	1 cut(s)	121
BspANI	GGCC	2 cut(s)	217, 960
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	838
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	838
BssECI	CCNNGG	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	5 cut(s)	229, 493, 577, 706, 739
Bst6I	CTCTTC	2 cut(s)	267, 1041
BstAFI	CTTAAG	1 cut(s)	304
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	301, 618
BstDEI	CTNAG	2 cut(s)	383, 877
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	54, 540, 672, 1096
BstMAI	GTCTC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 692, 890, 987
BstNSI	RCATGY	1 cut(s)	292
BstSLI	GKGCMC	2 cut(s)	440, 824
BstV1I	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BstV2I	GAAGAC	2 cut(s)	835, 1023
BsuRI	GGCC	2 cut(s)	217, 960
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	4 cut(s)	54, 540, 672, 1096
BtsIMutI	CAGTG	3 cut(s)	573, 653, 702
Cac8I	GCNNGC	2 cut(s)	301, 618
Cfr10I	RCCGGY	1 cut(s)	838
Cfr13I	GGNCC	4 cut(s)	485, 735, 762, 836
Csp6I	GTAC	3 cut(s)	292, 478, 607
CspAI	ACCGGT	1 cut(s)	838
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	3 cut(s)	292, 478, 607
DdeI	CTNAG	2 cut(s)	383, 877
DraIII	CACNNNGTG	1 cut(s)	708
DriI	GACNNNNNGTC	1 cut(s)	760
Eam1104I	CTCTTC	2 cut(s)	267, 1041
Eam1105I	GACNNNNNGTC	1 cut(s)	760
EarI	CTCTTC	2 cut(s)	267, 1041
Eco130I	CCWWGG	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	4 cut(s)	485, 735, 762, 836
Eco57I	CTGAAG	2 cut(s)	1035, 1062
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
FokI	GGATG	4 cut(s)	41, 527, 679, 1103
Fsp4HI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
FspBI	CTAG	4 cut(s)	266, 329, 443, 890
GluI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	2 cut(s)	217, 960
HapII	CCGG	2 cut(s)	456, 839
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	108, 301
HinfI	GANTC	4 cut(s)	280, 508, 744, 1019
HpaII	CCGG	2 cut(s)	456, 839
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	7 cut(s)	20, 142, 343, 512, 822, 1000, 1106
Hpy188I	TCNGA	2 cut(s)	1015, 1035
Hpy188III	TCNNGA	4 cut(s)	37, 200, 847, 1084
Hpy8I	GTNNAC	7 cut(s)	20, 142, 343, 512, 822, 1000, 1106
HpyAV	CCTTC	6 cut(s)	124, 334, 521, 553, 980, 1081
HpyCH4III	ACNGT	5 cut(s)	229, 493, 577, 706, 739
HpyCH4V	TGCA	5 cut(s)	299, 588, 616, 644, 822
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 692, 890, 987
HpyF3I	CTNAG	2 cut(s)	383, 877
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	5 cut(s)	572, 695, 715, 939, 953
LweI	GCATC	3 cut(s)	168, 341, 1081
MaeI	CTAG	4 cut(s)	266, 329, 443, 890
MaeIII	GTNAC	3 cut(s)	358, 651, 847
MboII	GAAGA	8 cut(s)	254, 395, 796, 835, 839, 1028, 1055, 1058
MhlI	GDGCHC	3 cut(s)	440, 791, 824
MluCI	AATT	5 cut(s)	369, 567, 798, 885, 1071
MlyI	GAGTC	3 cut(s)	274, 517, 1013
MmeI	TCCRAC	3 cut(s)	344, 369, 721
MnlI	CCTC	9 cut(s)	4, 60, 68, 144, 325, 385, 423, 547, 767
MseI	TTAA	3 cut(s)	305, 399, 1008
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	649, 695
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	2 cut(s)	456, 839
MwoI	GCNNNNNNNGC	4 cut(s)	11, 692, 890, 987
NcoI	CCATGG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	3 cut(s)	358, 651, 847
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	406
PciI	ACATGT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	744
PinAI	ACCGGT	1 cut(s)	838
PkrI	GCNGC	5 cut(s)	587, 685, 730, 929, 943
PleI	GAGTC	3 cut(s)	274, 516, 1013
PpsI	GAGTC	3 cut(s)	274, 516, 1013
PpuMI	RGGWCCY	1 cut(s)	485
PscI	ACATGT	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	4 cut(s)	485, 735, 762, 836
PspPPI	RGGWCCY	1 cut(s)	485
PvuII	CAGCTG	2 cut(s)	649, 695
RsaI	GTAC	3 cut(s)	293, 479, 608
RsaNI	GTAC	3 cut(s)	292, 478, 607
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	305, 399, 1008
SatI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
Sau96I	GGNCC	4 cut(s)	485, 735, 762, 836
SchI	GAGTC	3 cut(s)	274, 517, 1013
SduI	GDGCHC	3 cut(s)	440, 791, 824
SfaNI	GCATC	3 cut(s)	168, 341, 1081
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	4 cut(s)	485, 735, 762, 836
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	5 cut(s)	369, 567, 798, 885, 1071
SspMI	CTAG	4 cut(s)	266, 329, 443, 890
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	5 cut(s)	229, 493, 577, 706, 739
TaqI	TCGA	1 cut(s)	406
TasI	AATT	5 cut(s)	369, 567, 798, 885, 1071
TatI	WGTACW	2 cut(s)	291, 477
TfiI	GAWTC	1 cut(s)	744
Tru1I	TTAA	3 cut(s)	305, 399, 1008
Tru9I	TTAA	3 cut(s)	305, 399, 1008
TscAI	CASTG	3 cut(s)	580, 660, 709
TseFI	GTSAC	3 cut(s)	358, 651, 847
TseI	GCWGC	5 cut(s)	585, 683, 728, 927, 941
Tsp45I	GTSAC	3 cut(s)	358, 651, 847
TspDTI	ATGAA	4 cut(s)	143, 664, 796, 1008
TspRI	CASTG	3 cut(s)	580, 660, 709
Vha464I	CTTAAG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	820
VpaK11BI	GGWCC	4 cut(s)	485, 735, 762, 836
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	4 cut(s)	266, 329, 443, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.