Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

19268714 .. 19270505

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAGCTGTGGCATCTGTTACAGGATGGGCTTCGCAAGATTCAAGCCGCACATTCTCATGGTTTTGGCACAGATCGGTTATACATTTCTCTACTTAATTACAGCTGCATCCTTCAAACACGGGATGAACCCTCATGTCTTCGTAACTTATCGACATATAGTAGGTGGCTTAGTGATGTTTCCATTTGCCTATTTTCTTGAAAGAAAAGTAAGGCCAAAGTTGACACTAGCAGTGTTTCTGGAGATATTTTTACTGTCTCTGCTAGGGGTTAGCTTAACCCTTAATATGTATTTTGCGAGCTTGAAGTACACGTCTCCAACCTTTGTCACATCGGTCGCCAACACCATTCCGTCCCTAACTTTTATAATTGCAGTCATACTCAGGATGGAGGCTGTAGATGTTAGGAATCCCCGTGGAATAGCTAAAATCTTCGGAACCTTAATATCTTTGGCTGGAGCCATGACCATGACCTTGTACAAAGGACCTGCCGTGCAAAGCTCACCAGGAGCTCCAATACACATCACAAGTAACTCTGTTCACGAAAACTGGACGAAGGGATCAATCCTCCTCATTGGAAGTTGTATATCATGGTCCACATGGTTCATAATGCAGGCAATCACACTGAAGAAATATCCTGCACAACTGTCACTAACCACATGGATAAATTGTATTGGGGCAGCACAATCGGCCGTTTTCACAGTAACAATACAACACAAAAGGGCAGCATGGAGTATTACATACAACAATGACTTCTGGTCCATCATCTATGCTTATACTTTGCATGATAAAAAAAAACGACAGGGAGTTGTATGCTCAGGTATAACGGTCTTCATTCAACTGTGGTGCACAAAACAAAAAGGACCAGTTTTCGTGACCATGTTCAGTCCCCTTGCAACGGTATTGGTGGCAGTTATGGCATACTTCATTCTTGGTGAAAGACTGCACGTTGGCAGAATACTGGGAGCAGTCATTATCACCATCGGTCTCTACATGGTTTTATGGGGCAAAGATAGAGATCAAAATGTTATCAGGTCGCAAGAGCAAACTATATTAACTAGTAATGAGCAGATGAAACCCAAGATACAAATGGACACAAGTACAGGGTCCTCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

372

Amino Acids

41.44

Weight (kDa)

9.88

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	3 cut(s)	308, 476, 1099
AfiI	CCNNNNNNNGG	1 cut(s)	895
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	43, 115, 200, 304, 836
AhdI	GACNNNNNGTC	1 cut(s)	754
AhlI	ACTAGT	1 cut(s)	1055
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	7 cut(s)	6, 104, 273, 300, 422, 498, 509
AluI	AGCT	7 cut(s)	6, 104, 273, 300, 422, 498, 509
Alw21I	GWGCWC	2 cut(s)	511, 848
Alw26I	GTCTC	3 cut(s)	261, 318, 989
Alw44I	GTGCAC	1 cut(s)	844
AlwI	GGATC	1 cut(s)	565
AoxI	GGCC	2 cut(s)	212, 687
ApaLI	GTGCAC	1 cut(s)	844
ApeKI	GCWGC	3 cut(s)	104, 677, 722
AspS9I	GGNCC	5 cut(s)	482, 591, 756, 860, 1104
AsuHPI	GGTGA	3 cut(s)	492, 944, 967
AvaII	GGWCC	5 cut(s)	482, 591, 756, 860, 1104
BaeGI	GKGCMC	1 cut(s)	848
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	130, 820
Bbv12I	GWGCWC	2 cut(s)	511, 848
BbvI	GCAGC	3 cut(s)	91, 689, 734
BccI	CCATC	4 cut(s)	19, 379, 767, 986
BceAI	ACGGC	2 cut(s)	473, 674
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	261, 318, 989
BcuI	ACTAGT	1 cut(s)	1055
BfaI	CTAG	3 cut(s)	227, 263, 1056
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	4 cut(s)	47, 105, 678, 723
BlsI	GCNGC	4 cut(s)	48, 106, 679, 724
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	5 cut(s)	482, 591, 756, 860, 1104
BmeRI	GACNNNNNGTC	1 cut(s)	754
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	5 cut(s)	482, 591, 756, 860, 1104
BmiI	GGNNCC	3 cut(s)	436, 457, 1105
BmrFI	CCNGG	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	2 cut(s)	21, 116
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	2 cut(s)	130, 820
BpmI	CTGGAG	2 cut(s)	260, 474
Bpu10I	CCTNAGC	1 cut(s)	814
BsaBI	GATNNNNATC	1 cut(s)	1014
BsaI	GGTCTC	1 cut(s)	989
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse1I	ACTGG	3 cut(s)	551, 863, 963
Bse8I	GATNNNNATC	1 cut(s)	1014
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	4 cut(s)	30, 107, 129, 390
BseJI	GATNNNNATC	1 cut(s)	1014
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMII	CTCAG	2 cut(s)	394, 828
BseNI	ACTGG	3 cut(s)	551, 863, 963
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	848
BseX3I	CGGCCG	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	91, 689, 734
BsgI	GTGCAG	2 cut(s)	621, 926
Bsh1285I	CGRYCG	2 cut(s)	336, 690
BshFI	GGCC	2 cut(s)	214, 689
BsiEI	CGRYCG	2 cut(s)	336, 690
BsiHKAI	GWGCWC	2 cut(s)	511, 848
BslFI	GGGAC	2 cut(s)	337, 870
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	3 cut(s)	261, 318, 989
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	2 cut(s)	337, 870
BsnI	GGCC	2 cut(s)	214, 689
Bso31I	GGTCTC	1 cut(s)	989
Bsp1286I	GDGCHC	2 cut(s)	511, 848
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	72, 557, 1015
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	2 cut(s)	214, 689
BspCNI	CTCAG	2 cut(s)	393, 827
BspLI	GGNNCC	3 cut(s)	436, 457, 1105
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	989
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	3 cut(s)	551, 863, 963
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	3 cut(s)	72, 557, 1015
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	6 cut(s)	255, 645, 700, 826, 840, 898
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	298, 612
BstDEI	CTNAG	3 cut(s)	169, 380, 814
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	4 cut(s)	30, 107, 129, 390
BstKTI	GATC	3 cut(s)	75, 560, 1018
BstMAI	GTCTC	3 cut(s)	261, 318, 989
BstMBI	GATC	3 cut(s)	72, 557, 1015
BstMCI	CGRYCG	2 cut(s)	336, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 914
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	848
BstV1I	GCAGC	3 cut(s)	91, 689, 734
BstV2I	GAAGAC	2 cut(s)	130, 820
BstZI	CGGCCG	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	214, 689
BtgI	CCRYGG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	30, 107, 129, 390
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 620
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	298, 612
Cfr13I	GGNCC	5 cut(s)	482, 591, 756, 860, 1104
Csp6I	GTAC	3 cut(s)	307, 475, 1098
CviQI	GTAC	3 cut(s)	307, 475, 1098
DdeI	CTNAG	3 cut(s)	169, 380, 814
DpnI	GATC	3 cut(s)	74, 559, 1017
DpnII	GATC	3 cut(s)	72, 557, 1015
DriI	GACNNNNNGTC	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	687
EagI	CGGCCG	1 cut(s)	687
Eam1105I	GACNNNNNGTC	1 cut(s)	754
Ecl136II	GAGCTC	1 cut(s)	509
EclXI	CGGCCG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	989
Eco47I	GGWCC	5 cut(s)	482, 591, 756, 860, 1104
Eco52I	CGGCCG	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	509
EcoO109I	RGGNCCY	2 cut(s)	482, 1104
EcoRII	CCWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	318
FaqI	GGGAC	2 cut(s)	337, 870
Fnu4HI	GCNGC	4 cut(s)	47, 105, 678, 723
FokI	GGATG	4 cut(s)	37, 94, 136, 397
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	4 cut(s)	47, 105, 678, 723
FspBI	CTAG	3 cut(s)	227, 263, 1056
GluI	GCNGC	4 cut(s)	47, 105, 678, 723
GsuI	CTGGAG	2 cut(s)	260, 474
HaeIII	GGCC	2 cut(s)	214, 689
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	39, 406
HphI	GGTGA	3 cut(s)	492, 944, 967
Hpy166II	GTNNAC	5 cut(s)	222, 309, 538, 594, 846
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	5 cut(s)	197, 239, 382, 539, 871
Hpy8I	GTNNAC	5 cut(s)	222, 309, 538, 594, 846
HpyAV	CCTTC	2 cut(s)	121, 547
HpyCH4III	ACNGT	6 cut(s)	255, 645, 700, 826, 840, 898
HpyCH4IV	ACGT	2 cut(s)	311, 945
HpyCH4V	TGCA	9 cut(s)	107, 371, 493, 610, 638, 781, 846, 893, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 914
HpyF3I	CTNAG	3 cut(s)	169, 380, 814
HpySE526I	ACGT	2 cut(s)	311, 945
Kzo9I	GATC	3 cut(s)	72, 557, 1015
LmnI	GCTCC	4 cut(s)	455, 506, 514, 962
Lsp1109I	GCAGC	3 cut(s)	91, 689, 734
LweI	GCATC	2 cut(s)	21, 116
MaeI	CTAG	3 cut(s)	227, 263, 1056
MaeII	ACGT	2 cut(s)	311, 945
MaeIII	GTNAC	7 cut(s)	17, 142, 325, 527, 645, 700, 871
MalI	GATC	3 cut(s)	74, 559, 1017
MboI	GATC	3 cut(s)	72, 557, 1015
MboII	GAAGA	4 cut(s)	130, 421, 637, 820
MhlI	GDGCHC	2 cut(s)	511, 848
MluCI	AATT	3 cut(s)	96, 366, 664
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	4 cut(s)	141, 382, 575, 578
MseI	TTAA	5 cut(s)	95, 275, 282, 440, 1052
MslI	CAYNNNNRTG	2 cut(s)	56, 464
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	686, 914
NdeII	GATC	3 cut(s)	72, 557, 1015
NlaIV	GGNNCC	3 cut(s)	436, 457, 1105
NmuCI	GTSAC	3 cut(s)	325, 645, 871
PfeI	GAWTC	2 cut(s)	39, 406
PkrI	GCNGC	4 cut(s)	48, 106, 679, 724
PpuMI	RGGWCCY	2 cut(s)	482, 1104
PsiI	TTATAA	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	511
Psp5II	RGGWCCY	2 cut(s)	482, 1104
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	436, 457, 1105
PspPI	GGNCC	5 cut(s)	482, 591, 756, 860, 1104
PspPPI	RGGWCCY	2 cut(s)	482, 1104
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	308, 476, 1099
RsaNI	GTAC	3 cut(s)	307, 475, 1098
RseI	CAYNNNNRTG	2 cut(s)	56, 464
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	5 cut(s)	95, 275, 282, 440, 1052
SatI	GCNGC	4 cut(s)	47, 105, 678, 723
Sau3AI	GATC	3 cut(s)	72, 557, 1015
Sau96I	GGNCC	5 cut(s)	482, 591, 756, 860, 1104
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	511, 848
SfaNI	GCATC	2 cut(s)	21, 116
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	5 cut(s)	482, 591, 756, 860, 1104
SmiMI	CAYNNNNRTG	2 cut(s)	56, 464
SpeI	ACTAGT	1 cut(s)	1055
Sse9I	AATT	3 cut(s)	96, 366, 664
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	3 cut(s)	227, 263, 1056
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	6 cut(s)	255, 645, 700, 826, 840, 898
TaiI	ACGT	2 cut(s)	314, 948
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	2 cut(s)	322, 971
TasI	AATT	3 cut(s)	96, 366, 664
TatI	WGTACW	3 cut(s)	306, 474, 1097
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	39, 406
Tru1I	TTAA	5 cut(s)	95, 275, 282, 440, 1052
Tru9I	TTAA	5 cut(s)	95, 275, 282, 440, 1052
TscAI	CASTG	2 cut(s)	237, 627
TseFI	GTSAC	3 cut(s)	325, 645, 871
TseI	GCWGC	3 cut(s)	104, 677, 722
Tsp45I	GTSAC	3 cut(s)	325, 645, 871
TspDTI	ATGAA	5 cut(s)	140, 592, 820, 913, 1085
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	237, 627
VneI	GTGCAC	1 cut(s)	844
VpaK11BI	GGWCC	5 cut(s)	482, 591, 756, 860, 1104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XspI	CTAG	3 cut(s)	227, 263, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.