Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

51686862 .. 51688425

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAACCCTCATGTCTTTGTAACCTATCGACATATAGTTGGTGGCTTAGTCATGTTTCCATTTGCCTATTTTCTTGAAAGAAAAGCAAGGCCAAAGTTGACTCTAGCATTGTTTATGGAGATATTTGTGATTTCCCTTCTAGGGCTTAGCTTAACCCTTAATATGTATTTTGCAAGCCTGCAGTACACATCTTCAAGCTTCGTCACGTCAATAGCCAATACCATACCATCCCTGACTTTCATGATTGCAGTCATACTCAGGATGGAGGCTCTAGATGTAAGGAATCCGCGTGGAATAGCTAAACTCTTGGGAACATTAATATCTCTGGCTGGGGTCATCACCATGACTTCGTACAAAGGACCTGCAATACAAAGCTTCTCCAGAGCATCACAACACATAAGAAGTAATTTTGTTCACAAAAGCTGGACAAAGGGTTCAATCCTTGTGATTGCAAGTTGTATTACATGGTCCATATGGTACATAATGCAGGGGATCACATTGAAGAAATATCCTGCACAACTGTCACTAACTACATGGATCAATTGTATCGGTGCAGCGCAATCCGCTGTGTTCACAGTTATCATACAGCACAAACGGGCAGCATGGAGAATTACATACAACAATGATTTCTGGTCCATAATATATGCTGGAGTTGTATGCTCAGGTATAACAATCTTCATTCAACTATGGTGTACAAAACAAAAAGGACCTGTCTTTGTGACCATGTTCAGTCCTCTTGCAACAGCATTAGTGGCTATTCTAGGTTACTTCATTCTCGGCGAAAAGCTGCACATTGGCAGAATAGTGGGAGCGGTCATTATCATTATCGGTCTATACTTAGTCTTATGGGGCAAAGATAGAGATCAAAATCATTTCAAATCCCAAGAGCAACCTACTGATAACCAGAAGGAACCCAAGATGCAAGTGGGATCTTCAGCAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

315

Amino Acids

35.3

Weight (kDa)

9.92

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	1 - 115	1.3e-10	EamA-like transporter family
EamA	PF00892	144 - 282	6.9e-17	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	812
AccII	CGCG	1 cut(s)	289
AciI	CCGC	3 cut(s)	287, 564, 812
AclWI	GGATC	3 cut(s)	500, 545, 937
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	4 cut(s)	185, 353, 479, 694
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	6 cut(s)	77, 195, 438, 502, 683, 877
AjiI	CACGTC	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	418, 450
AluBI	AGCT	6 cut(s)	150, 198, 299, 375, 423, 787
AluI	AGCT	6 cut(s)	150, 198, 299, 375, 423, 787
AlwI	GGATC	3 cut(s)	500, 545, 937
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	3 cut(s)	554, 599, 787
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	4 cut(s)	359, 468, 633, 707
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	4 cut(s)	359, 468, 633, 707
BbvI	GCAGC	3 cut(s)	566, 611, 774
BccI	CCATC	2 cut(s)	235, 256
BfaI	CTAG	4 cut(s)	104, 140, 272, 761
BfmI	CTRYAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	3 cut(s)	555, 600, 788
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	556, 601, 789
Bme18I	GGWCC	4 cut(s)	359, 468, 633, 707
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	4 cut(s)	359, 468, 633, 707
BmiI	GGNNCC	1 cut(s)	912
BmsI	GCATC	2 cut(s)	395, 909
BpmI	CTGGAG	2 cut(s)	364, 669
Bpu10I	CCTNAGC	1 cut(s)	661
Bpu1102I	GCTNAGC	1 cut(s)	146
BsaBI	GATNNNNATC	2 cut(s)	861, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse8I	GATNNNNATC	2 cut(s)	861, 867
BseGI	GGATG	2 cut(s)	227, 267
BseJI	GATNNNNATC	2 cut(s)	861, 867
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	271, 675
BseXI	GCAGC	3 cut(s)	566, 611, 774
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	3 cut(s)	498, 573, 773
Bsh1236I	CGCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	692
Bsp143I	GATC	4 cut(s)	492, 537, 862, 929
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	3 cut(s)	287, 564, 812
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	2 cut(s)	270, 674
BspFNI	CGCG	1 cut(s)	289
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	912
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	3 cut(s)	500, 545, 937
BsrBI	CCGCTC	1 cut(s)	812
BsrGI	TGTACA	1 cut(s)	692
BssMI	GATC	4 cut(s)	492, 537, 862, 929
Bst4CI	ACNGT	2 cut(s)	522, 577
BstAUI	TGTACA	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	175, 179
BstDEI	CTNAG	5 cut(s)	46, 146, 257, 661, 838
BstF5I	GGATG	2 cut(s)	227, 267
BstFNI	CGCG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	4 cut(s)	495, 540, 865, 932
BstMBI	GATC	4 cut(s)	492, 537, 862, 929
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 752
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	3 cut(s)	566, 611, 774
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
BsuRI	GGCC	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	227, 267
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	175, 179
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	4 cut(s)	359, 468, 633, 707
Csp6I	GTAC	4 cut(s)	184, 352, 478, 693
CviAII	CATG	8 cut(s)	11, 52, 241, 343, 465, 534, 603, 724
CviQI	GTAC	4 cut(s)	184, 352, 478, 693
DdeI	CTNAG	5 cut(s)	46, 146, 257, 661, 838
DpnI	GATC	4 cut(s)	494, 539, 864, 931
DpnII	GATC	4 cut(s)	492, 537, 862, 929
Eco47I	GGWCC	4 cut(s)	359, 468, 633, 707
Eco57I	CTGAAG	1 cut(s)	918
EcoO109I	RGGNCCY	2 cut(s)	359, 707
FaeI	CATG	8 cut(s)	14, 55, 244, 346, 468, 537, 606, 727
FatI	CATG	8 cut(s)	10, 51, 240, 342, 464, 533, 602, 723
FauNDI	CATATG	1 cut(s)	473
Fnu4HI	GCNGC	3 cut(s)	555, 600, 788
FokI	GGATG	2 cut(s)	214, 274
Fsp4HI	GCNGC	3 cut(s)	555, 600, 788
FspBI	CTAG	4 cut(s)	104, 140, 272, 761
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	3 cut(s)	555, 600, 788
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	2 cut(s)	364, 669
HaeIII	GGCC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	8 cut(s)	14, 55, 244, 346, 468, 537, 606, 727
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	196, 373
HinfI	GANTC	2 cut(s)	100, 283
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	5 cut(s)	99, 186, 415, 573, 693
Hpy188III	TCNNGA	5 cut(s)	74, 241, 259, 272, 381
Hpy8I	GTNNAC	5 cut(s)	99, 186, 415, 573, 693
HpyAV	CCTTC	2 cut(s)	146, 901
HpyCH4III	ACNGT	2 cut(s)	522, 577
HpyCH4IV	ACGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 752
HpyF3I	CTNAG	5 cut(s)	46, 146, 257, 661, 838
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	8 cut(s)	14, 55, 244, 346, 468, 537, 606, 727
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	4 cut(s)	492, 537, 862, 929
LmnI	GCTCC	1 cut(s)	809
Lsp1109I	GCAGC	3 cut(s)	566, 611, 774
LweI	GCATC	2 cut(s)	395, 909
MaeI	CTAG	4 cut(s)	104, 140, 272, 761
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	5 cut(s)	19, 202, 522, 718, 764
MalI	GATC	4 cut(s)	494, 539, 864, 931
MbiI	CCGCTC	1 cut(s)	812
MboI	GATC	4 cut(s)	492, 537, 862, 929
MboII	GAAGA	4 cut(s)	183, 514, 667, 924
MfeI	CAATTG	1 cut(s)	541
MflI	RGATCY	1 cut(s)	929
MluCI	AATT	3 cut(s)	406, 541, 609
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	18, 259, 744
MseI	TTAA	3 cut(s)	152, 159, 317
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	563, 752
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	4 cut(s)	492, 537, 862, 929
NlaIII	CATG	8 cut(s)	14, 55, 244, 346, 468, 537, 606, 727
NlaIV	GGNNCC	1 cut(s)	912
NmeAIII	GCCGAG	1 cut(s)	756
NmuCI	GTSAC	3 cut(s)	202, 522, 718
PagI	TCATGA	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	556, 601, 789
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	2 cut(s)	359, 707
PshBI	ATTAAT	1 cut(s)	317
Psp5II	RGGWCCY	2 cut(s)	359, 707
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	4 cut(s)	359, 468, 633, 707
PspPPI	RGGWCCY	2 cut(s)	359, 707
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	929
RsaI	GTAC	4 cut(s)	185, 353, 479, 694
RsaNI	GTAC	4 cut(s)	184, 352, 478, 693
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	152, 159, 317
SatI	GCNGC	3 cut(s)	555, 600, 788
Sau3AI	GATC	4 cut(s)	492, 537, 862, 929
Sau96I	GGNCC	4 cut(s)	359, 468, 633, 707
SchI	GAGTC	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	395, 909
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	4 cut(s)	359, 468, 633, 707
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	406, 541, 609
SsiI	CCGC	3 cut(s)	287, 564, 812
SspMI	CTAG	4 cut(s)	104, 140, 272, 761
TaaI	ACNGT	2 cut(s)	522, 577
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	28
TaqII	GACCGA	1 cut(s)	818
TasI	AATT	3 cut(s)	406, 541, 609
TatI	WGTACW	2 cut(s)	183, 692
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	152, 159, 317
Tru9I	TTAA	3 cut(s)	152, 159, 317
TseFI	GTSAC	3 cut(s)	202, 522, 718
TseI	GCWGC	3 cut(s)	554, 599, 787
Tsp45I	GTSAC	3 cut(s)	202, 522, 718
TspDTI	ATGAA	4 cut(s)	17, 229, 667, 760
VpaK11BI	GGWCC	4 cut(s)	359, 468, 633, 707
VspI	ATTAAT	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XspI	CTAG	4 cut(s)	104, 140, 272, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.