Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

5755861 .. 5758735

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCACAAGAGCCAAGTTCCCATGTGGGAACTTATTACAAAAGGTTCAAGCCACACCTCCTCATGGTTTTATCTCAAGTGGCCTACGCATTTCTCTATTTCATTACAGAAGCTTCCTTCAATCATGGGATGAACCCTCATGTCTACATAACTTATCGACATATCGTGTCTGGCATAATCATGCTCCCTTTGGCCTATTTTCTTGAAAGAAAAGACAGACCAAAGCTCACATTTGCTCTTTTCTTGGAACTTTTTGTTATTTCTTTTCTGGGGATAGGTTTGACTTTAAACATGTACTTTGCAAGCTTAAGATACACCTCCCCAACCTTCCTTGCATCAATGATCAACACCATAGCTTCCCTCACTTTTGTGATTGCAGTTTCACTCAAGTTGGAGGTTCTTGATCTTCGAAATCCTCGTGGATTAGCAAAAGTTTTGGGCACCGTAGTCTCCTTAGCTGGCGCAGTCACATTGAAAAGATATCCTGCACAACTATCAATGATAACATGGATGAGCTTCCTAGGGGCAGCACAGTCAGCTGTCTTTGCAGTTTGTATAGAACATAAACGAGCTGCTTGGACAGTTGGATTCAACATTGACCTCTGGTGCATTTTGTATTCTGGAGGGGTGTGCTCTGGCCTAATACTCTTTATTCAACTATGGTGTACAGTAGAGAAAGGACCCGTCTTTGTGACCATGTTTGATCCCGTCTCAACAATATTGGTGGCAATTCTAGCATACTTTGTGCTTGGTGAAAGACTCTATATTGGCAGCATAGTAGGCGCAGCTATTGTCATTGTTGGCCTATACTTGCTGTTGTGGGGAAAAGAAGGTGATGAAGTTTACATCACCAAGTCTGAAGAGTCTGATCAGACAAATGAAGAGGAGAAAGATAACAACATGCCGACGATTTCTTCAGTCAAGAAGGATGCATTACATGATCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

316

Amino Acids

35.27

Weight (kDa)

7.05

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	19 - 156	4e-10	EamA-like transporter family
EamA	PF00892	153 - 273	2.6e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	698
AcuI	CTGAAG	2 cut(s)	879, 900
AfaI	GTAC	2 cut(s)	296, 667
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflII	CTTAAG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	6 cut(s)	49, 121, 206, 475, 592, 656
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	9 cut(s)	113, 226, 306, 356, 458, 516, 539, 572, 788
AluI	AGCT	9 cut(s)	113, 226, 306, 356, 458, 516, 539, 572, 788
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	2 cut(s)	454, 715
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	4 cut(s)	81, 192, 637, 802
ApeKI	GCWGC	4 cut(s)	527, 572, 771, 785
AspA2I	CCTAGG	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	464, 785
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	764, 841, 845
AsuII	TTCGAA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	680
AvrII	CCTAGG	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	440
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	539, 559, 783, 797
BclI	TGATCA	3 cut(s)	342, 868, 940
BcoDI	GTCTC	2 cut(s)	454, 715
BfaI	CTAG	2 cut(s)	521, 734
BfrI	CTTAAG	1 cut(s)	307
BisI	GCNGC	4 cut(s)	528, 573, 772, 786
BlnI	CCTAGG	1 cut(s)	520
BlsI	GCNGC	4 cut(s)	529, 574, 773, 787
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	2 cut(s)	442, 682
BmsI	GCATC	2 cut(s)	344, 919
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	409
BpuEI	CTTGAG	2 cut(s)	60, 371
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	135, 516, 934
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	50, 899
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	4 cut(s)	539, 559, 783, 797
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	83, 194, 639, 804
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	454, 715
BsmBI	CGTCTC	1 cut(s)	715
BsnI	GGCC	4 cut(s)	83, 194, 639, 804
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	443, 635
Bsp1407I	TGTACA	1 cut(s)	665
Bsp143I	GATC	5 cut(s)	342, 403, 703, 868, 940
BspANI	GGCC	4 cut(s)	83, 194, 639, 804
BspLI	GGNNCC	2 cut(s)	442, 682
BspPI	GGATC	1 cut(s)	698
BspT104I	TTCGAA	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	440
BspTI	CTTAAG	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	5 cut(s)	342, 403, 703, 868, 940
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	520
Bst2BI	CACGAG	1 cut(s)	417
Bst4CI	ACNGT	4 cut(s)	445, 534, 583, 670
Bst6I	CTCTTC	2 cut(s)	855, 876
BstAFI	CTTAAG	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	665
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	304, 460
BstDEI	CTNAG	1 cut(s)	454
BstF5I	GGATG	3 cut(s)	135, 516, 934
BstHHI	GCGC	2 cut(s)	464, 785
BstKTI	GATC	5 cut(s)	345, 406, 706, 871, 943
BstMAI	GTCTC	2 cut(s)	454, 715
BstMBI	GATC	5 cut(s)	342, 403, 703, 868, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	536, 545, 734, 780
BstNSI	RCATGY	2 cut(s)	295, 904
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	4 cut(s)	539, 559, 783, 797
BsuRI	GGCC	4 cut(s)	83, 194, 639, 804
BtsCI	GGATG	3 cut(s)	135, 516, 934
Cac8I	GCNNGC	2 cut(s)	304, 460
CfoI	GCGC	2 cut(s)	464, 785
Cfr13I	GGNCC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	295, 666
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviQI	GTAC	2 cut(s)	295, 666
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	5 cut(s)	344, 405, 705, 870, 942
DpnII	GATC	5 cut(s)	342, 403, 703, 868, 940
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	855, 876
EarI	CTCTTC	2 cut(s)	855, 876
Eco130I	CCWWGG	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	2 cut(s)	879, 900
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	715
FbaI	TGATCA	3 cut(s)	342, 868, 940
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	528, 573, 772, 786
FokI	GGATG	3 cut(s)	142, 523, 941
Fsp4HI	GCNGC	4 cut(s)	528, 573, 772, 786
FspBI	CTAG	2 cut(s)	521, 734
GlaI	GCGC	2 cut(s)	463, 784
GluI	GCNGC	4 cut(s)	528, 573, 772, 786
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	4 cut(s)	83, 194, 639, 804
HhaI	GCGC	2 cut(s)	464, 785
Hin6I	GCGC	2 cut(s)	462, 783
HinP1I	GCGC	2 cut(s)	462, 783
HindIII	AAGCTT	2 cut(s)	111, 304
HinfI	GANTC	3 cut(s)	588, 759, 863
HphI	GGTGA	3 cut(s)	764, 841, 845
Hpy166II	GTNNAC	3 cut(s)	145, 666, 844
Hpy188I	TCNGA	3 cut(s)	859, 868, 873
Hpy188III	TCNNGA	4 cut(s)	203, 401, 621, 922
Hpy8I	GTNNAC	3 cut(s)	145, 666, 844
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	4 cut(s)	127, 337, 824, 919
HpyCH4III	ACNGT	4 cut(s)	445, 534, 583, 670
HpyCH4V	TGCA	7 cut(s)	302, 335, 377, 488, 548, 609, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	536, 545, 734, 780
HpyF3I	CTNAG	1 cut(s)	454
HspAI	GCGC	2 cut(s)	462, 783
Ksp22I	TGATCA	3 cut(s)	342, 868, 940
Kzo9I	GATC	5 cut(s)	342, 403, 703, 868, 940
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	156, 254, 444, 498, 589, 606, 621
Lsp1109I	GCAGC	4 cut(s)	539, 559, 783, 797
LweI	GCATC	2 cut(s)	344, 919
MaeI	CTAG	2 cut(s)	521, 734
MaeIII	GTNAC	2 cut(s)	466, 691
MalI	GATC	5 cut(s)	344, 405, 705, 870, 942
MboI	GATC	5 cut(s)	342, 403, 703, 868, 940
MboII	GAAGA	4 cut(s)	398, 872, 893, 906
MhlI	GDGCHC	2 cut(s)	443, 635
MluCI	AATT	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	753, 872
MmeI	TCCRAC	2 cut(s)	372, 565
Mph1103I	ATGCAT	1 cut(s)	934
MseI	TTAA	2 cut(s)	287, 308
MslI	CAYNNNNRTG	2 cut(s)	179, 368
MspA1I	CMGCKG	1 cut(s)	539
MspCI	CTTAAG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	536, 545, 734, 780
NdeII	GATC	5 cut(s)	342, 403, 703, 868, 940
NlaIV	GGNNCC	2 cut(s)	442, 682
NmuCI	GTSAC	2 cut(s)	466, 691
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	2 cut(s)	295, 904
NspV	TTCGAA	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	4 cut(s)	529, 574, 773, 787
PleI	GAGTC	2 cut(s)	753, 871
PpsI	GAGTC	2 cut(s)	753, 871
PpuMI	RGGWCCY	1 cut(s)	680
PscI	ACATGT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	680
PspN4I	GGNNCC	2 cut(s)	442, 682
PspPI	GGNCC	1 cut(s)	680
PspPPI	RGGWCCY	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	2 cut(s)	296, 667
RsaNI	GTAC	2 cut(s)	295, 666
RseI	CAYNNNNRTG	2 cut(s)	179, 368
SaqAI	TTAA	2 cut(s)	287, 308
SatI	GCNGC	4 cut(s)	528, 573, 772, 786
Sau3AI	GATC	5 cut(s)	342, 403, 703, 868, 940
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	2 cut(s)	753, 872
SduI	GDGCHC	2 cut(s)	443, 635
SfaNI	GCATC	2 cut(s)	344, 919
SfuI	TTCGAA	1 cut(s)	409
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	2 cut(s)	179, 368
SmlI	CTYRAG	3 cut(s)	75, 307, 386
SmoI	CTYRAG	3 cut(s)	75, 307, 386
Sse9I	AATT	1 cut(s)	729
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	2 cut(s)	521, 734
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	4 cut(s)	445, 534, 583, 670
TaqI	TCGA	2 cut(s)	157, 409
TasI	AATT	1 cut(s)	729
TatI	WGTACW	2 cut(s)	294, 665
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	2 cut(s)	287, 308
Tru9I	TTAA	2 cut(s)	287, 308
TseFI	GTSAC	2 cut(s)	466, 691
TseI	GCWGC	4 cut(s)	527, 572, 771, 785
Tsp45I	GTSAC	2 cut(s)	466, 691
TspDTI	ATGAA	4 cut(s)	91, 146, 852, 894
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	680
XceI	RCATGY	2 cut(s)	295, 904
XmaJI	CCTAGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	521, 734
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.