Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

7774186 .. 7778986

Gene Structure 4801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGATTCGTTGGTTGGTTAGGACCCCACCAACTGGTGAAAGTCAGAGTCACAATAAGGAAGAAGAGGGACTAGAGGAGGCTATGGCACAAAAGGCTAGTTCACATGTGGGAGTTTGCAGGAAGTTCAAGCCTCACTTCCTCATGGTTTTAGCTCAAATGGGCTACACATTTCTTTATTTCATCACAGAAGCTTCCTTCAATCATGGGATGAACCCTCATGTCTACATTACTTATCGGCATATTGTTTCCGGCGTAGTGATGCTCCCTTTTGCCTATATTCTTGAAAGAAAAGAAAGACCGAAGCTCACATTTGCCCTTTTCTTGGAACTTTTTGTTCTTTCTCTTCTGGGGGTGGGTTTGACTTTAAACATGTACTTTGCAAGCTTAAGATACACCTCTCCAACCTTCCTTGCATCAATGGTCAACACAATAGCTTCTGTCACTTTCGTAATTGCCGTTGCCCTCAGGTTGGAGGCTCTTAATCTTCGAAATCCTCGCGGGTTAGCAAAAGTTTTGGGCACCCTAGTCTCTTTAGCAGGAGTAATGACCATGACTTTGTACAAGGGACCTACTGTGAGAAATCTATGGAGTCCACTAATCCATATTGAAGGAAAATCCTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTCACTGTTGCTAGCTGCATAACTTGGTCTGTCTGGTACATTATGCAGGCAATCACGTTGAAAAGATATCCTGCACAACTGTCACTGACTACATGGATGAGCTTCATAGGGGCAGCACAGTCAGCTGTGTTCACCGTGTGTATTGAACATAGACGAGCTGCTTGGACCGTTGGATTCAACATTGACCTCTGGTCCATTCTGTACGCCGGAGTGGTGTGCTCTGGTCTAGTAATCTTCATTCAACTATGGTGCACAGAAGAAAAAGGACCAGTCTTTGTGACCATGTTCAATCCTGTTTCAACAATCTTGGTGGCAATTCTAGCATACTTTGTGCTCGGTGAAAGACTTTACATCGGCAGCATATTAGGGGCAGCTATTGTCATTGTTGGCCTATACTTGCTGTTGTGGGGGAAAGAAGGTGATGAAGTTTACATCATTAAGTCTGAAGACTCATCTGATCAGACATACGAAGAGAAAGATGACAGAATACGAACAATCACTTCAGTCAAGAAGGATCCATTACATGGTGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

395

Amino Acids

44.35

Weight (kDa)

8.66

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	45 - 184	5.9e-09	EamA-like transporter family
EamA	PF00892	214 - 352	3.7e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	518
AccB7I	CCANNNNNTGG	2 cut(s)	32, 1175
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	498
AclWI	GGATC	2 cut(s)	1160, 1173
AcuI	CTGAAG	2 cut(s)	1116, 1137
AdeI	CACNNNGTG	1 cut(s)	789
AfaI	GTAC	4 cut(s)	374, 560, 689, 854
AfiI	CCNNNNNNNGG	4 cut(s)	32, 322, 469, 1175
AflII	CTTAAG	1 cut(s)	385
AflIII	ACRYGT	2 cut(s)	103, 369
AhdI	GACNNNNNGTC	1 cut(s)	841
Alw21I	GWGCWC	3 cut(s)	872, 905, 987
Alw26I	GTCTC	1 cut(s)	532
Alw44I	GTGCAC	1 cut(s)	901
AlwI	GGATC	2 cut(s)	1160, 1173
AoxI	GGCC	1 cut(s)	1039
ApaLI	GTGCAC	1 cut(s)	901
ApeKI	GCWGC	5 cut(s)	666, 764, 809, 1008, 1022
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
AspS9I	GGNCC	5 cut(s)	21, 566, 816, 843, 917
AsuHPI	GGTGA	4 cut(s)	47, 775, 1001, 1082
AsuII	TTCGAA	1 cut(s)	487
AsuNHI	GCTAGC	1 cut(s)	662
AvaII	GGWCC	5 cut(s)	21, 566, 816, 843, 917
AxyI	CCTNAGG	1 cut(s)	464
BaeGI	GKGCMC	2 cut(s)	521, 905
BamHI	GGATCC	1 cut(s)	1165
BanI	GGYRCC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	1104
Bbv12I	GWGCWC	3 cut(s)	872, 905, 987
BbvI	GCAGC	5 cut(s)	653, 776, 796, 1020, 1034
BccI	CCATC	1 cut(s)	629
BceAI	ACGGC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	1108
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	6 cut(s)	71, 96, 524, 663, 878, 971
BfrI	CTTAAG	1 cut(s)	385
BisI	GCNGC	5 cut(s)	667, 765, 810, 1009, 1023
BlsI	GCNGC	5 cut(s)	668, 766, 811, 1010, 1024
Bme18I	GGWCC	5 cut(s)	21, 566, 816, 843, 917
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmgT120I	GGNCC	5 cut(s)	21, 566, 816, 843, 917
BmiI	GGNNCC	4 cut(s)	23, 520, 567, 1167
BmsI	GCATC	2 cut(s)	249, 422
BmtI	GCTAGC	1 cut(s)	666
BpiI	GAAGAC	1 cut(s)	1104
Bpu14I	TTCGAA	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 322, 469, 1175
Bse1I	ACTGG	3 cut(s)	37, 638, 920
Bse21I	CCTNAGG	1 cut(s)	464
BseGI	GGATG	3 cut(s)	213, 621, 753
BseLI	CCNNNNNNNGG	4 cut(s)	32, 322, 469, 1175
BseMII	CTCAG	1 cut(s)	478
BseNI	ACTGG	3 cut(s)	37, 638, 920
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	2 cut(s)	521, 905
BseXI	GCAGC	5 cut(s)	653, 776, 796, 1020, 1034
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	1041
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	3 cut(s)	872, 905, 987
BsiSI	CCGG	2 cut(s)	249, 858
BslFI	GGGAC	2 cut(s)	81, 579
BslI	CCNNNNNNNGG	4 cut(s)	32, 322, 469, 1175
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	2 cut(s)	81, 579
BsnI	GGCC	1 cut(s)	1041
Bsp119I	TTCGAA	1 cut(s)	487
Bsp1286I	GDGCHC	4 cut(s)	521, 872, 905, 987
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	1108, 1165
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	1041
BspCNI	CTCAG	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	23, 520, 567, 1167
BspOI	GCTAGC	1 cut(s)	666
BspPI	GGATC	2 cut(s)	1160, 1173
BspT104I	TTCGAA	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	518
BspTI	CTTAAG	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	3 cut(s)	37, 638, 920
BssMI	GATC	2 cut(s)	1108, 1165
Bst4CI	ACNGT	6 cut(s)	574, 658, 732, 771, 787, 820
Bst6I	CTCTTC	3 cut(s)	57, 348, 1116
BstAFI	CTTAAG	1 cut(s)	385
BstAUI	TGTACA	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	3 cut(s)	382, 664, 699
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	213, 621, 753
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	2 cut(s)	1111, 1168
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	1108, 1165
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 773, 971
BstNSI	RCATGY	2 cut(s)	107, 373
BstSLI	GKGCMC	2 cut(s)	521, 905
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	5 cut(s)	653, 776, 796, 1020, 1034
BstV2I	GAAGAC	1 cut(s)	1104
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
Bsu36I	CCTNAGG	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	1041
BtsCI	GGATG	3 cut(s)	213, 621, 753
BtsIMutI	CAGTG	2 cut(s)	654, 734
Cac8I	GCNNGC	3 cut(s)	382, 664, 699
Cfr13I	GGNCC	5 cut(s)	21, 566, 816, 843, 917
Csp6I	GTAC	4 cut(s)	373, 559, 688, 853
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviQI	GTAC	4 cut(s)	373, 559, 688, 853
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	1110, 1167
DpnII	GATC	2 cut(s)	1108, 1165
DraI	TTTAAA	1 cut(s)	366
DraIII	CACNNNGTG	1 cut(s)	789
DriI	GACNNNNNGTC	1 cut(s)	841
Eam1104I	CTCTTC	3 cut(s)	57, 348, 1116
Eam1105I	GACNNNNNGTC	1 cut(s)	841
EarI	CTCTTC	3 cut(s)	57, 348, 1116
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	5 cut(s)	21, 566, 816, 843, 917
Eco57I	CTGAAG	2 cut(s)	1116, 1137
Eco81I	CCTNAGG	1 cut(s)	464
EcoO109I	RGGNCCY	2 cut(s)	21, 566
EcoRV	GATATC	1 cut(s)	719
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	81, 579
FauI	CCCGC	1 cut(s)	491
FbaI	TGATCA	1 cut(s)	1108
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	667, 765, 810, 1009, 1023
FokI	GGATG	3 cut(s)	220, 608, 760
Fsp4HI	GCNGC	5 cut(s)	667, 765, 810, 1009, 1023
FspBI	CTAG	6 cut(s)	71, 96, 524, 663, 878, 971
GluI	GCNGC	5 cut(s)	667, 765, 810, 1009, 1023
HaeIII	GGCC	1 cut(s)	1041
HapII	CCGG	2 cut(s)	249, 858
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	189, 382
HinfI	GANTC	5 cut(s)	4, 46, 589, 825, 1100
HpaII	CCGG	2 cut(s)	249, 858
HphI	GGTGA	4 cut(s)	47, 775, 1001, 1082
Hpy166II	GTNNAC	8 cut(s)	101, 223, 424, 593, 783, 903, 1081, 1181
Hpy188I	TCNGA	4 cut(s)	45, 1096, 1108, 1113
Hpy188III	TCNNGA	2 cut(s)	281, 1159
Hpy8I	GTNNAC	8 cut(s)	101, 223, 424, 593, 783, 903, 1081, 1181
HpyAV	CCTTC	6 cut(s)	205, 415, 602, 634, 1061, 1156
HpyCH4III	ACNGT	6 cut(s)	574, 658, 732, 771, 787, 820
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	7 cut(s)	117, 380, 413, 669, 697, 725, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 773, 971
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	1108
Kzo9I	GATC	2 cut(s)	1108, 1165
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	5 cut(s)	653, 776, 796, 1020, 1034
LweI	GCATC	2 cut(s)	249, 422
MaeI	CTAG	6 cut(s)	71, 96, 524, 663, 878, 971
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	4 cut(s)	47, 439, 732, 928
MalI	GATC	2 cut(s)	1110, 1167
MboI	GATC	2 cut(s)	1108, 1165
MboII	GAAGA	8 cut(s)	71, 74, 335, 476, 877, 920, 1109, 1133
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	4 cut(s)	521, 872, 905, 987
MluCI	AATT	3 cut(s)	450, 648, 966
MlyI	GAGTC	3 cut(s)	55, 598, 1094
MmeI	TCCRAC	3 cut(s)	425, 450, 802
MseI	TTAA	4 cut(s)	365, 386, 480, 1089
MspA1I	CMGCKG	1 cut(s)	776
MspCI	CTTAAG	1 cut(s)	385
MspI	CCGG	2 cut(s)	249, 858
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	92, 773, 971
NdeII	GATC	2 cut(s)	1108, 1165
NheI	GCTAGC	1 cut(s)	662
NlaIV	GGNNCC	4 cut(s)	23, 520, 567, 1167
NmuCI	GTSAC	4 cut(s)	47, 439, 732, 928
NspI	RCATGY	2 cut(s)	107, 373
NspV	TTCGAA	1 cut(s)	487
PciI	ACATGT	2 cut(s)	103, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	4, 825
PflMI	CCANNNNNTGG	2 cut(s)	32, 1175
PkrI	GCNGC	5 cut(s)	668, 766, 811, 1010, 1024
PleI	GAGTC	3 cut(s)	54, 597, 1094
PpsI	GAGTC	3 cut(s)	54, 597, 1094
PpuMI	RGGWCCY	2 cut(s)	21, 566
PscI	ACATGT	2 cut(s)	103, 369
Psp5II	RGGWCCY	2 cut(s)	21, 566
PspN4I	GGNNCC	4 cut(s)	23, 520, 567, 1167
PspPI	GGNCC	5 cut(s)	21, 566, 816, 843, 917
PspPPI	RGGWCCY	2 cut(s)	21, 566
PsuI	RGATCY	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	4 cut(s)	374, 560, 689, 854
RsaNI	GTAC	4 cut(s)	373, 559, 688, 853
SaqAI	TTAA	4 cut(s)	365, 386, 480, 1089
SatI	GCNGC	5 cut(s)	667, 765, 810, 1009, 1023
Sau3AI	GATC	2 cut(s)	1108, 1165
Sau96I	GGNCC	5 cut(s)	21, 566, 816, 843, 917
SchI	GAGTC	3 cut(s)	55, 598, 1094
SduI	GDGCHC	4 cut(s)	521, 872, 905, 987
SfaNI	GCATC	2 cut(s)	249, 422
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	5 cut(s)	21, 566, 816, 843, 917
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	3 cut(s)	450, 648, 966
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	6 cut(s)	71, 96, 524, 663, 878, 971
TaaI	ACNGT	6 cut(s)	574, 658, 732, 771, 787, 820
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	1 cut(s)	487
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	450, 648, 966
TatI	WGTACW	2 cut(s)	372, 558
TfiI	GAWTC	2 cut(s)	4, 825
Tru1I	TTAA	4 cut(s)	365, 386, 480, 1089
Tru9I	TTAA	4 cut(s)	365, 386, 480, 1089
TscAI	CASTG	2 cut(s)	661, 741
TseFI	GTSAC	4 cut(s)	47, 439, 732, 928
TseI	GCWGC	5 cut(s)	666, 764, 809, 1008, 1022
Tsp45I	GTSAC	4 cut(s)	47, 439, 732, 928
TspDTI	ATGAA	5 cut(s)	169, 224, 745, 877, 1089
TspRI	CASTG	2 cut(s)	661, 741
Van91I	CCANNNNNTGG	2 cut(s)	32, 1175
Vha464I	CTTAAG	1 cut(s)	385
VneI	GTGCAC	1 cut(s)	901
VpaK11BI	GGWCC	5 cut(s)	21, 566, 816, 843, 917
XceI	RCATGY	2 cut(s)	107, 373
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	6 cut(s)	71, 96, 524, 663, 878, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.