Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

20275728 .. 20277911

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G225600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTCATGGTCAAGTAGGAATTTAACCAAGAACATGATACTCTCAACATGCAGGCATAACCAAAACAGAATTCCTTTCAATGCATTGATTATAAACAGGCAAAGAGTAGCAAAAAAATATGTTGCAGAAGATCAAGCTATGGCACCAGTAGTATGTCCATACATGGTCTACATGAGATTTAAGCCACATCTTCTCATGGTTTTGATACAGATCGGCTATACGTTTCTCTACTTTATAACCGCTGCATCCTTCGATCACGGGATGAACCCTCATGTCTTTGTAACCTATAGACATATAGTAGGTGGCTTAGTGATGTTTCCATTTGCCTATTTTCTTGAAAGAAAAGTAAGGCCAAAGTTGACACTAGCATTGTTTCTGGAGATATTTGTACTTTCTCTGCTAGGGGTTAGCTTAACCCTTAATATATATTTTGCAAGCTTGAAGTACACTTCTCCAACCTTTGTCACATCAATTGCTAACACCATTCCATCCCTGACTTTTCTAATTGCTGTCATACTCAGGCTGGAGGCTGTAGACGTTATGAGTCCCCATGGAATAGCTAAAGTCTTCGGAACCTTACTATCTTTGGCTGGGGTCATGACCATGACCTTGTACAGAGGACCTACTGTGCAAAGCTTCCCAGGCGCTTCAGTACACATCAGAAGTGATTCTGTTCACAAAAACTGGACGAAAGGATCAATCCTAATCGTTGCAAGTTGTATATCGTGGTCCATATGGTTCATAATGCAGGGAATCACATTGAAGAAATATCCTGCACAACTGTCTCTAACCACATGGATAAATTGTGTTGGGGCAGCACAATCGGCTGTTTTCACAGTAATTATAGAACACAAACAGGCAGCTTGGAGCATTTCGTACAACAATGAGTTCTGGTCTATCCTATATGCTGGAATTGTATGCTCAGGTATCGCAATCTTCGTTCAACTGTGGTGCATAAAACAAAAAGGACCAGTTTTTGTGACCATGTTCAGTCCCCTTGCAACATCATTGGTGGCAGTTATGGCGTACTTCATTCTCGGCGAAACACTGCATGTTGGCAGAATACTTGGAGCAGTCATTATCATCATTGGACTATACTTGGTTTTATGGGGCAAAGATATAGATGAAAATCATAGCAGGCCCCAAGATCAAGCTATATTGACTAGTGATGAGCTGAAGAAACCCAAGATACAAATGGAACCTTTAGCAGAATCACAGGTCCTCGAAACGGACCTTGAGAAGAAAGGTGCAATTGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

421

Amino Acids

47.0

Weight (kDa)

9.43

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	92, 236
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	2 cut(s)	168, 534
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	2 cut(s)	19, 69
AcuI	CTGAAG	2 cut(s)	633, 1196
AfaI	GTAC	6 cut(s)	390, 446, 614, 654, 878, 1028
AfiI	CCNNNNNNNGG	1 cut(s)	1228
AgsI	TTSAA	5 cut(s)	79, 338, 442, 763, 944
AhlI	ACTAGT	1 cut(s)	1163
AjnI	CCWGG	1 cut(s)	640
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	8 cut(s)	137, 411, 438, 560, 636, 863, 1154, 1174
AluI	AGCT	8 cut(s)	137, 411, 438, 560, 636, 863, 1154, 1174
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	1 cut(s)	703
AoxI	GGCC	2 cut(s)	350, 1139
ApeKI	GCWGC	3 cut(s)	242, 815, 860
ApoI	RAATTY	2 cut(s)	19, 69
Asp700I	GAANNNNTTC	1 cut(s)	667
AspLEI	GCGC	1 cut(s)	647
AspS9I	GGNCC	6 cut(s)	620, 729, 968, 1140, 1219, 1231
AvaII	GGWCC	5 cut(s)	620, 729, 968, 1219, 1231
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	229, 827, 872
BccI	CCATC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	789
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	3 cut(s)	365, 401, 1164
BfmI	CTRYAG	2 cut(s)	286, 531
BfoI	RGCGCY	1 cut(s)	648
BisI	GCNGC	3 cut(s)	243, 816, 861
BlsI	GCNGC	3 cut(s)	244, 817, 862
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	5 cut(s)	620, 729, 968, 1219, 1231
BmgT120I	GGNCC	6 cut(s)	620, 729, 968, 1140, 1219, 1231
BmiI	GGNNCC	4 cut(s)	144, 574, 1142, 1200
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	559
BpmI	CTGGAG	2 cut(s)	398, 545
Bpu10I	CCTNAGC	1 cut(s)	922
BpuEI	CTTGAG	1 cut(s)	1256
BsaBI	GATNNNNATC	2 cut(s)	209, 1128
BsaJI	CCNNGG	2 cut(s)	550, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	1228
Bse1I	ACTGG	3 cut(s)	146, 689, 971
Bse8I	GATNNNNATC	2 cut(s)	209, 1128
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	550, 640
BseGI	GGATG	3 cut(s)	245, 267, 488
BseJI	GATNNNNATC	2 cut(s)	209, 1128
BseLI	CCNNNNNNNGG	1 cut(s)	1228
BseMII	CTCAG	2 cut(s)	532, 936
BseNI	ACTGG	3 cut(s)	146, 689, 971
BseXI	GCAGC	3 cut(s)	229, 827, 872
BseYI	CCCAGC	1 cut(s)	590
BsgI	GTGCAG	1 cut(s)	759
BshFI	GGCC	2 cut(s)	352, 1141
BshNI	GGYRCC	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	531, 978
BslI	CCNNNNNNNGG	1 cut(s)	1228
BsmAI	GTCTC	1 cut(s)	789
BsmFI	GGGAC	2 cut(s)	531, 978
BsnI	GGCC	2 cut(s)	352, 1141
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	5 cut(s)	130, 210, 253, 695, 1147
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	352, 1141
BspCNI	CTCAG	2 cut(s)	531, 935
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	4 cut(s)	144, 574, 1142, 1200
BspPI	GGATC	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	146, 689, 971
BssECI	CCNNGG	2 cut(s)	550, 640
BssMI	GATC	5 cut(s)	130, 210, 253, 695, 1147
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	4 cut(s)	628, 783, 838, 948
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	3 cut(s)	53, 436, 1139
BstDEI	CTNAG	3 cut(s)	307, 518, 922
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	3 cut(s)	245, 267, 488
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	5 cut(s)	133, 213, 256, 698, 1150
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	5 cut(s)	130, 210, 253, 695, 1147
BstMWI	GCNNNNNNNGC	3 cut(s)	642, 824, 1022
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	2 cut(s)	51, 1055
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	2 cut(s)	286, 531
BstV1I	GCAGC	3 cut(s)	229, 827, 872
BstV2I	GAAGAC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	352, 1141
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	245, 267, 488
BtsI	GCAGTG	1 cut(s)	1046
BtsIMutI	CAGTG	1 cut(s)	1046
Cac8I	GCNNGC	3 cut(s)	53, 436, 1139
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	647
Cfr13I	GGNCC	6 cut(s)	620, 729, 968, 1140, 1219, 1231
Csp6I	GTAC	6 cut(s)	389, 445, 613, 653, 877, 1027
CviQI	GTAC	6 cut(s)	389, 445, 613, 653, 877, 1027
DdeI	CTNAG	3 cut(s)	307, 518, 922
DpnI	GATC	5 cut(s)	132, 212, 255, 697, 1149
DpnII	GATC	5 cut(s)	130, 210, 253, 695, 1147
Eco130I	CCWWGG	1 cut(s)	550
Eco47I	GGWCC	5 cut(s)	620, 729, 968, 1219, 1231
Eco57I	CTGAAG	2 cut(s)	633, 1196
EcoO109I	RGGNCCY	3 cut(s)	620, 1140, 1219
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	550
FaqI	GGGAC	2 cut(s)	531, 978
FauNDI	CATATG	1 cut(s)	734
FblI	GTMKAC	2 cut(s)	168, 534
Fnu4HI	GCNGC	3 cut(s)	243, 816, 861
FokI	GGATG	3 cut(s)	232, 274, 475
Fsp4HI	GCNGC	3 cut(s)	243, 816, 861
FspBI	CTAG	3 cut(s)	365, 401, 1164
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	3 cut(s)	243, 816, 861
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	2 cut(s)	398, 545
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	352, 1141
HhaI	GCGC	1 cut(s)	647
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	2 cut(s)	436, 634
HinfI	GANTC	4 cut(s)	544, 668, 753, 1211
Hpy166II	GTNNAC	6 cut(s)	169, 360, 447, 535, 655, 676
Hpy188I	TCNGA	2 cut(s)	572, 662
Hpy188III	TCNNGA	3 cut(s)	335, 377, 598
Hpy8I	GTNNAC	6 cut(s)	169, 360, 447, 535, 655, 676
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	4 cut(s)	628, 783, 838, 948
HpyCH4IV	ACGT	2 cut(s)	221, 537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	642, 824, 1022
HpyF3I	CTNAG	3 cut(s)	307, 518, 922
HpySE526I	ACGT	2 cut(s)	221, 537
HspAI	GCGC	1 cut(s)	645
Kzo9I	GATC	5 cut(s)	130, 210, 253, 695, 1147
LmnI	GCTCC	2 cut(s)	867, 1070
Lsp1109I	GCAGC	3 cut(s)	229, 827, 872
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	3 cut(s)	365, 401, 1164
MaeII	ACGT	2 cut(s)	221, 537
MaeIII	GTNAC	3 cut(s)	280, 463, 979
MalI	GATC	5 cut(s)	132, 212, 255, 697, 1149
MboI	GATC	5 cut(s)	130, 210, 253, 695, 1147
MboII	GAAGA	7 cut(s)	140, 182, 559, 775, 928, 1189, 1252
MfeI	CAATTG	2 cut(s)	471, 1251
MluCI	AATT	8 cut(s)	19, 69, 471, 504, 802, 840, 912, 1251
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	4 cut(s)	279, 520, 611, 1232
Mph1103I	ATGCAT	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	667
MseI	TTAA	4 cut(s)	23, 180, 413, 420
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	2 cut(s)	471, 1251
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	642, 824, 1022
NcoI	CCATGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	734
NdeII	GATC	5 cut(s)	130, 210, 253, 695, 1147
NlaIV	GGNNCC	4 cut(s)	144, 574, 1142, 1200
NmeAIII	GCCGAG	1 cut(s)	1017
NmuCI	GTSAC	2 cut(s)	463, 979
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	2 cut(s)	51, 1055
PagI	TCATGA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	3 cut(s)	668, 753, 1211
PkrI	GCNGC	3 cut(s)	244, 817, 862
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PpuMI	RGGWCCY	2 cut(s)	620, 1219
PsiI	TTATAA	2 cut(s)	92, 236
Psp5II	RGGWCCY	2 cut(s)	620, 1219
Psp6I	CCWGG	1 cut(s)	640
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	4 cut(s)	144, 574, 1142, 1200
PspPI	GGNCC	6 cut(s)	620, 729, 968, 1140, 1219, 1231
PspPPI	RGGWCCY	2 cut(s)	620, 1219
RsaI	GTAC	6 cut(s)	390, 446, 614, 654, 878, 1028
RsaNI	GTAC	6 cut(s)	389, 445, 613, 653, 877, 1027
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	4 cut(s)	23, 180, 413, 420
SatI	GCNGC	3 cut(s)	243, 816, 861
Sau3AI	GATC	5 cut(s)	130, 210, 253, 695, 1147
Sau96I	GGNCC	6 cut(s)	620, 729, 968, 1140, 1219, 1231
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	642
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	2 cut(s)	286, 531
SinI	GGWCC	5 cut(s)	620, 729, 968, 1219, 1231
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	1235
SmoI	CTYRAG	1 cut(s)	1235
SpeI	ACTAGT	1 cut(s)	1163
Sse9I	AATT	8 cut(s)	19, 69, 471, 504, 802, 840, 912, 1251
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	3 cut(s)	365, 401, 1164
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	4 cut(s)	628, 783, 838, 948
TaiI	ACGT	2 cut(s)	224, 540
TaqI	TCGA	2 cut(s)	252, 1224
TasI	AATT	8 cut(s)	19, 69, 471, 504, 802, 840, 912, 1251
TatI	WGTACW	4 cut(s)	388, 444, 612, 652
TfiI	GAWTC	3 cut(s)	668, 753, 1211
Tru1I	TTAA	4 cut(s)	23, 180, 413, 420
Tru9I	TTAA	4 cut(s)	23, 180, 413, 420
TscAI	CASTG	1 cut(s)	1053
TseFI	GTSAC	2 cut(s)	463, 979
TseI	GCWGC	3 cut(s)	242, 815, 860
Tsp45I	GTSAC	2 cut(s)	463, 979
TspDTI	ATGAA	4 cut(s)	278, 730, 1021, 1140
TspGWI	ACGGA	1 cut(s)	1244
TspRI	CASTG	1 cut(s)	1053
VpaK11BI	GGWCC	5 cut(s)	620, 729, 968, 1219, 1231
XapI	RAATTY	2 cut(s)	19, 69
XceI	RCATGY	2 cut(s)	51, 1055
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1192
XmiI	GTMKAC	2 cut(s)	168, 534
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	3 cut(s)	365, 401, 1164
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.