Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

6358209 .. 6360572

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCACAAAAGGCAAGTTCACATGTGGGAGTTTGCAGGAAGTTCAAGCCTCACTTCCTCATGGTTTTAGCTCAAATGGGCTACACATTTCTTTATTTTATCACAGAAGCTTCCTTCAATCATGGGATGAACCCTCATGTCTATATTACTTATCGGCATATTGTTTCCGGCGTAGTGATGCTCCCTTTTGCCTATTTTCTTGAAAGAAAAGAAAGACCGAAGCTCACATTTGCCCTTTTCTTGGAACTTTTTGTTCTTTCTCTTCTGGGGGTGGGTTTGACTTTAAACATGTACTTTGCAAGCTTAAGATACACCTCTCCAACCTTCCTTGCATCAATGGTCAACACAATAGCTTCTGTCACTTTCGTAATTGCCGTTGCCCTCAGGTTGGAGGCTCTTAATATTCGAAATCCTCGTGGGTTAGCAAAAGTTTTGGGCACCCTAGTCTCTTTAGCAGGAGTAATGACCATGACTTTGTACAAGGGACCTACTGTGAGAAATCTATGGAGTCCACTAATCCATATTGAAGGAAAATCCTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTCACTGTTGCTAGCTGCATAACTTGGTCTGTCTGGTACATTATGCAGGCAATCACGTTGAAAAGATATCCTGCACAACTGTCACTGACTACATGGATGAGCTTCATAGGGGCAGCACAGTCAGCTGTGTTCACTGTGTGTATTGAACATAGACGAGCTGCTTGGACCGTTGGATTCAACATTGACCTCTGGTCCATTCTGTACGCCGGAGTGGTGTGCTCTGGTCTAGTAATCTTCATTCAACTATGGTGCACAGAAGAAAAAGGACCAGTCTTTGTGACCATGTTCAATCCTGTTTCAACAATCTTGGTGGCAATTCTAGCATACTTTGTGCTCGGTGAAAGACTTTACATCGGCAGCATATTAGGGGCAGCTATCGTCATTGTTGGCCTATACTTGCTGTTGTGGGGGAAAGAAGGTGATGAAGTTTACATCATTAAGTCTGAAGACTCATCTGATCAGACATACGAACAGGAGAAAGATGACAGAATACGAACAATCACTTCAGTCAAGAAGGATGCATTACATGGTGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

369

Amino Acids

41.38

Weight (kDa)

9.06

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 157	7.6e-09	EamA-like transporter family
EamA	PF00892	187 - 325	3.2e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	1035, 1059
AdeI	CACNNNGTG	1 cut(s)	708
AfaI	GTAC	4 cut(s)	293, 479, 608, 773
AfiI	CCNNNNNNNGG	2 cut(s)	241, 388
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	2 cut(s)	22, 288
AhdI	GACNNNNNGTC	1 cut(s)	760
Alw21I	GWGCWC	3 cut(s)	791, 824, 906
Alw26I	GTCTC	1 cut(s)	451
Alw44I	GTGCAC	1 cut(s)	820
AoxI	GGCC	1 cut(s)	958
ApaLI	GTGCAC	1 cut(s)	820
ApeKI	GCWGC	5 cut(s)	585, 683, 728, 927, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AspS9I	GGNCC	4 cut(s)	485, 735, 762, 836
AsuHPI	GGTGA	2 cut(s)	920, 1001
AsuII	TTCGAA	1 cut(s)	406
AsuNHI	GCTAGC	1 cut(s)	581
AvaII	GGWCC	4 cut(s)	485, 735, 762, 836
AxyI	CCTNAGG	1 cut(s)	383
BaeGI	GKGCMC	2 cut(s)	440, 824
BanI	GGYRCC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	1023
Bbv12I	GWGCWC	3 cut(s)	791, 824, 906
BbvI	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	1027
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	4 cut(s)	443, 582, 797, 890
BfrI	CTTAAG	1 cut(s)	304
BisI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
BlsI	GCNGC	5 cut(s)	587, 685, 730, 929, 943
Bme18I	GGWCC	4 cut(s)	485, 735, 762, 836
BmeRI	GACNNNNNGTC	1 cut(s)	760
BmgT120I	GGNCC	4 cut(s)	485, 735, 762, 836
BmiI	GGNNCC	2 cut(s)	439, 486
BmsI	GCATC	3 cut(s)	168, 341, 1078
BmtI	GCTAGC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	1023
Bpu14I	TTCGAA	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 388
Bse1I	ACTGG	2 cut(s)	557, 839
Bse21I	CCTNAGG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	132, 540, 672, 1093
BseLI	CCNNNNNNNGG	2 cut(s)	241, 388
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	2 cut(s)	557, 839
BseSI	GKGCMC	2 cut(s)	440, 824
BseXI	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	960
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	3 cut(s)	791, 824, 906
BsiSI	CCGG	2 cut(s)	168, 777
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	241, 388
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	960
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	4 cut(s)	440, 791, 824, 906
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	1027
BspANI	GGCC	1 cut(s)	960
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	439, 486
BspOI	GCTAGC	1 cut(s)	585
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	304
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	557, 839
BssMI	GATC	1 cut(s)	1027
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	6 cut(s)	493, 577, 651, 690, 706, 739
Bst6I	CTCTTC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	304
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	301, 583, 618
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	4 cut(s)	132, 540, 672, 1093
BstKTI	GATC	1 cut(s)	1030
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 692, 890
BstNSI	RCATGY	2 cut(s)	26, 292
BstSLI	GKGCMC	2 cut(s)	440, 824
BstV1I	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BstV2I	GAAGAC	1 cut(s)	1023
Bsu36I	CCTNAGG	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	960
BtsCI	GGATG	4 cut(s)	132, 540, 672, 1093
BtsIMutI	CAGTG	3 cut(s)	573, 653, 702
Cac8I	GCNNGC	3 cut(s)	301, 583, 618
Cfr13I	GGNCC	4 cut(s)	485, 735, 762, 836
Csp6I	GTAC	4 cut(s)	292, 478, 607, 772
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	4 cut(s)	292, 478, 607, 772
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	1 cut(s)	1029
DpnII	GATC	1 cut(s)	1027
DraI	TTTAAA	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	708
DriI	GACNNNNNGTC	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	267
Eam1105I	GACNNNNNGTC	1 cut(s)	760
EarI	CTCTTC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	4 cut(s)	485, 735, 762, 836
Eco57I	CTGAAG	2 cut(s)	1035, 1059
Eco81I	CCTNAGG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	638
EcoT22I	ATGCAT	1 cut(s)	1093
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	1027
Fnu4HI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
FokI	GGATG	4 cut(s)	139, 527, 679, 1100
Fsp4HI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
FspBI	CTAG	4 cut(s)	443, 582, 797, 890
GluI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
HaeIII	GGCC	1 cut(s)	960
HapII	CCGG	2 cut(s)	168, 777
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	108, 301
HinfI	GANTC	3 cut(s)	508, 744, 1019
HpaII	CCGG	2 cut(s)	168, 777
HphI	GGTGA	2 cut(s)	920, 1001
Hpy166II	GTNNAC	7 cut(s)	20, 343, 512, 702, 822, 1000, 1103
Hpy188I	TCNGA	3 cut(s)	1015, 1027, 1032
Hpy188III	TCNNGA	2 cut(s)	200, 1081
Hpy8I	GTNNAC	7 cut(s)	20, 343, 512, 702, 822, 1000, 1103
HpyAV	CCTTC	6 cut(s)	124, 334, 521, 553, 980, 1078
HpyCH4III	ACNGT	6 cut(s)	493, 577, 651, 690, 706, 739
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	8 cut(s)	36, 299, 332, 588, 616, 644, 822, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 692, 890
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	626
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	1 cut(s)	1027
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	5 cut(s)	572, 695, 715, 939, 953
LweI	GCATC	3 cut(s)	168, 341, 1078
MaeI	CTAG	4 cut(s)	443, 582, 797, 890
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	3 cut(s)	358, 651, 847
MalI	GATC	1 cut(s)	1029
MboI	GATC	1 cut(s)	1027
MboII	GAAGA	4 cut(s)	254, 796, 839, 1028
MhlI	GDGCHC	4 cut(s)	440, 791, 824, 906
MluCI	AATT	3 cut(s)	369, 567, 885
MlyI	GAGTC	2 cut(s)	517, 1013
MmeI	TCCRAC	3 cut(s)	344, 369, 721
MnlI	CCTC	9 cut(s)	60, 68, 144, 325, 385, 392, 423, 547, 767
Mph1103I	ATGCAT	1 cut(s)	1093
MseI	TTAA	4 cut(s)	284, 305, 399, 1008
MspA1I	CMGCKG	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	2 cut(s)	168, 777
MwoI	GCNNNNNNNGC	3 cut(s)	11, 692, 890
NdeII	GATC	1 cut(s)	1027
NheI	GCTAGC	1 cut(s)	581
NlaIV	GGNNCC	2 cut(s)	439, 486
NmuCI	GTSAC	3 cut(s)	358, 651, 847
NsiI	ATGCAT	1 cut(s)	1093
NspI	RCATGY	2 cut(s)	26, 292
NspV	TTCGAA	1 cut(s)	406
PciI	ACATGT	2 cut(s)	22, 288
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 412
PfeI	GAWTC	1 cut(s)	744
PkrI	GCNGC	5 cut(s)	587, 685, 730, 929, 943
PleI	GAGTC	2 cut(s)	516, 1013
PpsI	GAGTC	2 cut(s)	516, 1013
PpuMI	RGGWCCY	1 cut(s)	485
PscI	ACATGT	2 cut(s)	22, 288
Psp5II	RGGWCCY	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	439, 486
PspPI	GGNCC	4 cut(s)	485, 735, 762, 836
PspPPI	RGGWCCY	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	4 cut(s)	293, 479, 608, 773
RsaNI	GTAC	4 cut(s)	292, 478, 607, 772
SaqAI	TTAA	4 cut(s)	284, 305, 399, 1008
SatI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
Sau3AI	GATC	1 cut(s)	1027
Sau96I	GGNCC	4 cut(s)	485, 735, 762, 836
SchI	GAGTC	2 cut(s)	517, 1013
SduI	GDGCHC	4 cut(s)	440, 791, 824, 906
SfaNI	GCATC	3 cut(s)	168, 341, 1078
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	4 cut(s)	485, 735, 762, 836
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	3 cut(s)	369, 567, 885
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	4 cut(s)	443, 582, 797, 890
TaaI	ACNGT	6 cut(s)	493, 577, 651, 690, 706, 739
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	1 cut(s)	406
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	369, 567, 885
TatI	WGTACW	2 cut(s)	291, 477
TfiI	GAWTC	1 cut(s)	744
Tru1I	TTAA	4 cut(s)	284, 305, 399, 1008
Tru9I	TTAA	4 cut(s)	284, 305, 399, 1008
TscAI	CASTG	3 cut(s)	580, 660, 709
TseFI	GTSAC	3 cut(s)	358, 651, 847
TseI	GCWGC	5 cut(s)	585, 683, 728, 927, 941
Tsp45I	GTSAC	3 cut(s)	358, 651, 847
TspDTI	ATGAA	4 cut(s)	143, 664, 796, 1008
TspRI	CASTG	3 cut(s)	580, 660, 709
Vha464I	CTTAAG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	820
VpaK11BI	GGWCC	4 cut(s)	485, 735, 762, 836
XceI	RCATGY	2 cut(s)	26, 292
XspI	CTAG	4 cut(s)	443, 582, 797, 890
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.