Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001800.1

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

82056 .. 88669

Gene Structure 6614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001800.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgccatctgaagaggactgtcgaccagatgatgcatcagagggtactgccgaccaaactattacctggagggtactgccgactagtaactaccaaagaaaggaagaggaggacgaggcgcttctaaagagaccggtttcacagctagaggtggccagaatcagcgccgacgaggctgagaaggttcgcccatttccggaactgaaacaggataaggaagaagagggactagaggaaattatggcacaacagccaagttcccatgtgggaacttacaagaggttcaagccacacctcctcatggttttatctcaagtggcctacgcatttctctatttcattacagaagcttccttcaatcatgggatgaaccctcatgtctacataacttatcgacatatcgtgtctggcataatcatgctcccttttgcctattttcttgaaagaaaagacagaccaaagctcacatttgctcttttcttagaactttttgttatttcttttctggggataggtttgactttaaacatgtactttgcaagcttaagatacacctctccaaccttccttgcatcaatgatcaacaccatagcttccctcacttttgtgattgcagtttcactcaagttagcagtcacattgaaaagatatcctgcacaactatcaatgataacatggatgagcttcctaggggcagcacaggcagctgtctttgcagtttgtatagaacataaacgagctgcttggacagttggattcaacattgacctctggtgcattttgtattctggaggggtgtgctcttgcctaatactctttattcaactatggtgcacagtagagaaaggacctgtctttgtgaccatgtttgatcccgtctcaacaatattggtggcaattctagcatactttgtgcttggtgaaagactctatattggcagcatagtaggcgcagctatcgtcattgttggcctatacttgctgttgtggggaaaagaaggtgatgaagtttacaccactaagtctgaagagactgaccagacaaatgaagaggagaaagataacaatatgccgacgatttcttcagtcaagaaggatgcattacatgatcaaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

372

Amino Acids

42.0

Weight (kDa)

5.15

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	22, 381
AccIII	TCCGGA	1 cut(s)	196
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	3 cut(s)	30, 1047, 1068
AfaI	GTAC	3 cut(s)	46, 75, 533
AfiI	CCNNNNNNNGG	3 cut(s)	100, 196, 301
AflII	CTTAAG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	528
AgeI	ACCGGT	1 cut(s)	133
AgsI	TTSAA	6 cut(s)	286, 358, 443, 643, 760, 824
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	9 cut(s)	145, 350, 463, 543, 593, 684, 707, 740, 956
AluI	AGCT	9 cut(s)	145, 350, 463, 543, 593, 684, 707, 740, 956
Alw21I	GWGCWC	2 cut(s)	803, 836
Alw26I	GTCTC	3 cut(s)	124, 883, 1025
Alw44I	GTGCAC	1 cut(s)	832
AlwI	GGATC	1 cut(s)	866
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	153, 318, 970
ApaLI	GTGCAC	1 cut(s)	832
ApeKI	GCWGC	5 cut(s)	695, 704, 740, 939, 953
AsiGI	ACCGGT	1 cut(s)	133
AspA2I	CCTAGG	1 cut(s)	688
AspLEI	GCGC	3 cut(s)	121, 167, 953
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	2 cut(s)	932, 1013
AvaII	GGWCC	1 cut(s)	848
AvrII	CCTAGG	1 cut(s)	688
BaeGI	GKGCMC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	803, 836
BbvI	GCAGC	5 cut(s)	707, 716, 727, 951, 965
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	67
BclI	TGATCA	2 cut(s)	579, 1108
BcoDI	GTCTC	3 cut(s)	124, 883, 1025
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	5 cut(s)	84, 146, 230, 689, 902
BfoI	RGCGCY	2 cut(s)	122, 168
BfrI	CTTAAG	1 cut(s)	544
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	5 cut(s)	696, 705, 741, 940, 954
BlnI	CCTAGG	1 cut(s)	688
BlsI	GCNGC	5 cut(s)	697, 706, 742, 941, 955
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	848
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	4 cut(s)	22, 44, 581, 1087
BpmI	CTGGAG	2 cut(s)	88, 810
BpuEI	CTTGAG	2 cut(s)	297, 608
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	688
BsaWI	WCCGGW	2 cut(s)	133, 196
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 196, 301
Bse118I	RCCGGY	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	3 cut(s)	372, 684, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	100, 196, 301
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	3 cut(s)	122, 287, 1067
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	5 cut(s)	707, 716, 727, 951, 965
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	155, 320, 972
BshTI	ACCGGT	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	803, 836
BsiSI	CCGG	2 cut(s)	134, 197
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	3 cut(s)	100, 196, 301
BsmAI	GTCTC	3 cut(s)	124, 883, 1025
BsmBI	CGTCTC	1 cut(s)	883
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	3 cut(s)	155, 320, 972
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	803, 836
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	579, 871, 1108
BspANI	GGCC	3 cut(s)	155, 320, 972
BspCNI	CTCAG	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	196
BspPI	GGATC	1 cut(s)	866
BspTI	CTTAAG	1 cut(s)	544
BspTNI	GGTCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	3 cut(s)	579, 871, 1108
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	20, 751, 838
Bst6I	CTCTTC	5 cut(s)	6, 99, 216, 1023, 1044
BstAFI	CTTAAG	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	3 cut(s)	177, 481, 1020
BstF5I	GGATG	3 cut(s)	372, 684, 1102
BstH2I	RGCGCY	2 cut(s)	122, 168
BstHHI	GCGC	3 cut(s)	121, 167, 953
BstKTI	GATC	3 cut(s)	582, 874, 1111
BstMAI	GTCTC	3 cut(s)	124, 883, 1025
BstMBI	GATC	3 cut(s)	579, 871, 1108
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 701, 704, 713, 902, 948
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	5 cut(s)	707, 716, 727, 951, 965
BsuRI	GGCC	3 cut(s)	155, 320, 972
BtsCI	GGATG	3 cut(s)	372, 684, 1102
Cac8I	GCNNGC	1 cut(s)	541
CfoI	GCGC	3 cut(s)	121, 167, 953
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	848
Csp6I	GTAC	3 cut(s)	45, 74, 532
CspAI	ACCGGT	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	873, 908
CviQI	GTAC	3 cut(s)	45, 74, 532
DdeI	CTNAG	3 cut(s)	177, 481, 1020
DpnI	GATC	3 cut(s)	581, 873, 1110
DpnII	GATC	3 cut(s)	579, 871, 1108
DraI	TTTAAA	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	5 cut(s)	6, 99, 216, 1023, 1044
EarI	CTCTTC	5 cut(s)	6, 99, 216, 1023, 1044
Eco130I	CCWWGG	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	848
Eco57I	CTGAAG	3 cut(s)	30, 1047, 1068
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRII	CCWGG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	688
EcoT22I	ATGCAT	2 cut(s)	37, 1102
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	883
FaqI	GGGAC	1 cut(s)	240
FbaI	TGATCA	2 cut(s)	579, 1108
FblI	GTMKAC	2 cut(s)	22, 381
Fnu4HI	GCNGC	5 cut(s)	696, 705, 741, 940, 954
FokI	GGATG	3 cut(s)	379, 691, 1109
Fsp4HI	GCNGC	5 cut(s)	696, 705, 741, 940, 954
FspBI	CTAG	5 cut(s)	84, 146, 230, 689, 902
GlaI	GCGC	3 cut(s)	120, 166, 952
GluI	GCNGC	5 cut(s)	696, 705, 741, 940, 954
GsuI	CTGGAG	2 cut(s)	88, 810
HaeII	RGCGCY	2 cut(s)	122, 168
HaeIII	GGCC	3 cut(s)	155, 320, 972
HapII	CCGG	2 cut(s)	134, 197
HhaI	GCGC	3 cut(s)	121, 167, 953
Hin6I	GCGC	3 cut(s)	119, 165, 951
HinP1I	GCGC	3 cut(s)	119, 165, 951
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	348, 541
HinfI	GANTC	3 cut(s)	159, 756, 927
HpaII	CCGG	2 cut(s)	134, 197
HphI	GGTGA	2 cut(s)	932, 1013
Hpy166II	GTNNAC	4 cut(s)	23, 382, 834, 1012
Hpy188I	TCNGA	3 cut(s)	10, 40, 1027
Hpy188III	TCNNGA	4 cut(s)	197, 440, 789, 1090
Hpy8I	GTNNAC	4 cut(s)	23, 382, 834, 1012
Hpy99I	CGWCG	2 cut(s)	173, 1078
HpyAV	CCTTC	5 cut(s)	175, 364, 574, 992, 1087
HpyCH4III	ACNGT	3 cut(s)	20, 751, 838
HpyCH4V	TGCA	9 cut(s)	35, 539, 572, 614, 656, 716, 777, 834, 1100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 701, 704, 713, 902, 948
HpyF3I	CTNAG	3 cut(s)	177, 481, 1020
HspAI	GCGC	3 cut(s)	119, 165, 951
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	2 cut(s)	579, 1108
Kzo9I	GATC	3 cut(s)	579, 871, 1108
LmnI	GCTCC	1 cut(s)	426
Lsp1109I	GCAGC	5 cut(s)	707, 716, 727, 951, 965
LweI	GCATC	4 cut(s)	22, 44, 581, 1087
MaeI	CTAG	5 cut(s)	84, 146, 230, 689, 902
MaeIII	GTNAC	3 cut(s)	86, 634, 859
MalI	GATC	3 cut(s)	581, 873, 1110
MboI	GATC	3 cut(s)	579, 871, 1108
MboII	GAAGA	7 cut(s)	23, 116, 230, 233, 1040, 1061, 1074
MhlI	GDGCHC	2 cut(s)	803, 836
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	237, 897
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	921
MmeI	TCCRAC	2 cut(s)	584, 733
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	2 cut(s)	37, 1102
MroI	TCCGGA	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	2 cut(s)	524, 545
MslI	CAYNNNNRTG	2 cut(s)	416, 605
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	707
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	2 cut(s)	134, 197
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	6 cut(s)	173, 701, 704, 713, 902, 948
NdeII	GATC	3 cut(s)	579, 871, 1108
NmuCI	GTSAC	2 cut(s)	634, 859
NsiI	ATGCAT	2 cut(s)	37, 1102
NspI	RCATGY	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	605
PciI	ACATGT	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	159, 756
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	5 cut(s)	697, 706, 742, 941, 955
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
PpuMI	RGGWCCY	1 cut(s)	848
PscI	ACATGT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	848
PspPPI	RGGWCCY	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	46, 75, 533
RsaNI	GTAC	3 cut(s)	45, 74, 532
RseI	CAYNNNNRTG	2 cut(s)	416, 605
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	524, 545
SatI	GCNGC	5 cut(s)	696, 705, 741, 940, 954
Sau3AI	GATC	3 cut(s)	579, 871, 1108
Sau96I	GGNCC	1 cut(s)	848
SchI	GAGTC	1 cut(s)	921
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	803, 836
SfaNI	GCATC	4 cut(s)	22, 44, 581, 1087
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	2 cut(s)	416, 605
SmlI	CTYRAG	3 cut(s)	312, 544, 623
SmoI	CTYRAG	3 cut(s)	312, 544, 623
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	2 cut(s)	237, 897
SspI	AATATT	1 cut(s)	888
SspMI	CTAG	5 cut(s)	84, 146, 230, 689, 902
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	3 cut(s)	20, 751, 838
TaqI	TCGA	2 cut(s)	22, 394
TasI	AATT	2 cut(s)	237, 897
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	2 cut(s)	159, 756
Tru1I	TTAA	2 cut(s)	524, 545
Tru9I	TTAA	2 cut(s)	524, 545
TseFI	GTSAC	2 cut(s)	634, 859
TseI	GCWGC	5 cut(s)	695, 704, 740, 939, 953
Tsp45I	GTSAC	2 cut(s)	634, 859
TspDTI	ATGAA	4 cut(s)	328, 383, 1020, 1062
Vha464I	CTTAAG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	848
XceI	RCATGY	1 cut(s)	532
XmaJI	CCTAGG	1 cut(s)	688
XmiI	GTMKAC	2 cut(s)	22, 381
XspI	CTAG	5 cut(s)	84, 146, 230, 689, 902
Zsp2I	ATGCAT	2 cut(s)	37, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.