Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

31673535 .. 31677305

Gene Structure 3771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGGCTTCACCTGCAATAGACCTTCTGATCGGCAAAATAGTATCATTTCTTGAAAGTGAAGTCTCATTGCTAGAAGGAGTTCATGATGAGCTACACGAAGTCAAGCTTGAGCTATTAACCATGAAAGCCTTCTTGGAGGATGCAGAAAGGAAGGGAGCTCTGAGTGAAGTAGAGAAAACATGGGTGGCAAATGTAAGAGACGTCTCCATTGATGTCGAAGAGATCATTGATGAGTTTACGTACGAGACAAACAAGCGAAGAAGTTGGGGTCCGTTCACAGGAGCCTTTTGGAAGACGCTTCGCCTCCCACAGAACATCTGGGAGAGGCATAGGATTGCCACCAAATTGCAGAAGATCATAAAAACAATCAAAGATATTCCAGAGAGAAACCGGCGTTATGGTTCTGTGCGCATAGAAGGCAGTACTTCCCACCATGATGTGAACCGGATTAAAGTCTATGGCGAGTCGTCGCTTTTCTTGAAAGATGATGATCTGGTGGGGATCACAGATGCTAGAAAGAAGTTAGTTGGATGGTTGTTGTCTAGCCATTCTCAAAGAACTGTGATTTCAGTTGTAGGAATGGGGGGTTCGGGCAAGACGACCTTAGTTGCAAGCACCTTCAACAATCACACTGTACAGCAACATTTTGATTGCTACACGTGGATTACAGTCTCACAAAGTTATATCGTTGAAGATCTGTTTAGAGTCATGATCAATGAATTATTGGCAGCGGCACAAATAGATGTTCCTCAGAACTTGAGCAACATGAGTTACAGACATTTGGTGGAAATGCTAGTTCACTACTTGCAGCCATGGAGGTATATGATTGTCTTAGATGATGTGTGGGACACTAATCTTTGGAGATCCATAGATGTTGCACTTCCCAATGGAACTCATGGTAGCCGGATCATGCTTACAACTCGGAACAAAGACATAGCTTCTTTGGCATTTGGAGTCGAAAGTCATGTTCATCAGGTTGAACCTCTTAATACAAATGAGGCTTGGGATCTTTTCTCCAGAAGAGCATTCTCTGGTGGGAGTGACAAGTCTTGTCCACCAGAGCTTCAAATCATAGCTAGGGAGCTCGTAGGAAAATGTGAAGGCTTACCTCTAGGACTTGTGGCTTTGGGTTCTCTCATGTCAACCAAAAGATTTGTGTCCGAGTGGAAGAAAGTTTACAATAGCATGAGTTGGGAGCTCAGCAATAATCCGACACTTGAAGTAGTGAAGAGCATTTTGTTGCTAAGCTTCAATGATCTACCTTACCGACTCAAGCACTGCTTCTTATATTTCTGCATTTTTCCTGAAGATTATGCAATTAAGTGCAAAAGGCTAGTTCGGTTGTGGATAGCAGAGGGGTTTGTTGAAGAAGTTAGAGGGGGTCAGCCAGAAGAGATAGCTGAGAGCTACCTAGCAGAGCTAACTTGCCGCTGTATGCTTCAAGTGGTTGAGAGGGAACCATCTGGAAAGGCAAAAAAATTTAAAATGCATGACCTTCTGCGAGAACTTGCCATTTCAATTTCAGAAGCAGAGAAGTTTTGTACTGTGTATAATGAGAAAGAAACAAATGAAGAGAGACAAGCTCCACGCCGCCTTTCAATACAAGGAAGCTCTGGAAAAGTACGAGCACACAAAGACATGACAAAGGTACGCTCATTCTTTGTCTTTGCTCCTAAGATGATGGCCTCTTCTTCTTCTTTGGAAAAAGTATTACCATCTGGTTTCAAACTGTTGAGGGTCTTGGATCTTAAATATGTTCCGATCCAGGAATTGCCAGATGAAATAATGAAGTGCTTTAACTTGACGAGTTTGAACTTGAAAGGGACAGAAGTAAGAAAGCTACCAAAACGCATGGGGAATCTTCAGAACTTGGAAACAATGGATATTAGGGACTCCAATATAAGGGAACTTCCAGTTGGAATTGTGAAGTTACAGAAGTTGCGACATCTTTTCATGTACCATTTCAATTATGGAGCTTACAAGTCATTTAATAGCTTTCAAGGCACAAGAGCACCAGCAGGCATATGTAAGCTACAGAGTCTGCAAATTTTGGATTCAATCGAGGCGGGAAGTGAGTTGATCAAACAGCTTCAGCACATGACCCAACTCACTGCATTAGGCTTAGCGAATGTGAAGGAAGCCGATGAGATAGACTTGTGCAAGTCAATCGAAAGCATGAAACTGATGGAATGCTTAACCGTCAAGACAAGTAGTGAGGATGAGGTGTTACGCATGGATGCATTGTTGTCGGCTCCTCCTCTGCTGAAAACACTTGTTTTAACTGGAAAGTTAAACAAGGTTCCGCTCTGGTTTGCTTCTCTTGAGAGCCTTACCGTCTTATATTTGCATTGGTCCAGATCAACAGAAGACTTTCTTCCTCACATTCATGCACTACCTAATTTGACCAAACTTTGGCTATGCAATGCATATGTAGGAAACCAGTTGCTCTTTCAAACTGGATTCCAAAAGCTTTCTGGTTTGTACATAACCAATTTTCCTCAGTTGAATCTGATCACCATAGAGAAGGGGGTGATGCCAGCACTGAAGACTCTGGACATTTCTGAATGCATGGAGTTAAAGCGATTGCCTCGCGGAATCAAACTTCTGACATGTCTCCAGAAGTTGCATCTGCACACGGTTCCCAATGAACTCGTGGAGCGCATGCGCCGAGAACGAGGTGTGGATCATTCAGAGAAAGGACCTAGGGCAACAACCCCAGCCCACAATACAAAGCCCAAGAGCCCTACAGGGAAGGTTCCAACTCAGAGCCCATCAAGCTGGCTTGGTCCAGGCCCAACAGCTCCAAAAACGCCATGTCGTACGAACCAAAAAACAGCGCCGCTGTCCGCCCGACTTGAGCTGCCACGACCAGAGCCTCCACAATCGTCGCTGCCACGATCCCACACCGCTACGACACCAACCGCCCCGCCTCAGGCCGCCACAAAACCCACGCCTTTGAGACCCGATTCAGAACCATGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

994

Amino Acids

112.58

Weight (kDa)

8.83

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 90	1.7e-22	Rx N-terminal domain
NB-ARC	PF00931	172 - 344	5.8e-45	NB-ARC domain
WHD_DRP	PF23559	433 - 504	3.9e-23	Disease resistance protein Winged helix domain
LRR_14	PF23598	549 - 880	3.9e-40	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AatII	GACGTC	1 cut(s)	204
Acc16I	TGCGCA	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	2412
AccBSI	CCGCTC	1 cut(s)	2305
AccII	CGCG	1 cut(s)	2592
AclWI	GGATC	8 cut(s)	509, 858, 914, 1014, 1752, 1756, 2691, 2892
AcsI	RAATTY	2 cut(s)	1478, 2046
AcuI	CTGAAG	4 cut(s)	1326, 1847, 2075, 2564
AcvI	CACGTG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	9 cut(s)	242, 424, 636, 1543, 1623, 1650, 1958, 2483, 2821
AfiI	CCNNNNNNNGG	4 cut(s)	278, 1902, 2412, 2932
AflIII	ACRYGT	2 cut(s)	657, 2609
AjnI	CCWGG	2 cut(s)	1764, 2788
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 1899, 1931
Alw21I	GWGCWC	5 cut(s)	160, 1086, 1200, 1630, 2014
Alw26I	GTCTC	8 cut(s)	67, 192, 208, 239, 676, 1570, 2618, 2953
AlwI	GGATC	8 cut(s)	509, 858, 914, 1014, 1752, 1756, 2691, 2892
AlwNI	CAGNNNCTG	1 cut(s)	2041
AoxI	GGCC	3 cut(s)	1683, 2791, 2934
ApeKI	GCWGC	4 cut(s)	728, 808, 2860, 2890
ApoI	RAATTY	2 cut(s)	1478, 2046
Asp700I	GAANNNNTTC	3 cut(s)	78, 128, 2370
AspA2I	CCTAGG	1 cut(s)	2702
AspLEI	GCGC	4 cut(s)	411, 2661, 2667, 2839
AspS9I	GGNCC	5 cut(s)	269, 2352, 2699, 2786, 2792
AsuHPI	GGTGA	2 cut(s)	2506, 2542
AvaII	GGWCC	4 cut(s)	269, 2352, 2699, 2786
AvrII	CCTAGG	1 cut(s)	2702
AxyI	CCTNAGG	1 cut(s)	2931
BanII	GRGCYC	5 cut(s)	160, 1086, 1200, 2744, 2771
BarI	GAAGNNNNNNTAC	2 cut(s)	1160, 1192
BauI	CACGAG	1 cut(s)	2651
BbrPI	CACGTG	1 cut(s)	660
BbsI	GAAGAC	3 cut(s)	299, 2373, 2552
Bbv12I	GWGCWC	5 cut(s)	160, 1086, 1200, 1630, 2014
BbvI	GCAGC	4 cut(s)	740, 820, 2847, 2877
BccI	CCATC	6 cut(s)	525, 1468, 1675, 1723, 2179, 2779
BcgI	CGANNNNNNTGC	4 cut(s)	2149, 2183, 2229, 2263
BciT130I	CCWGG	2 cut(s)	1766, 2790
BclI	TGATCA	3 cut(s)	711, 2079, 2511
BcoDI	GTCTC	8 cut(s)	67, 192, 208, 239, 676, 1570, 2618, 2953
BfaI	CTAG	9 cut(s)	71, 513, 543, 794, 1077, 1112, 1334, 1412, 2703
BfmI	CTRYAG	2 cut(s)	2033, 2745
BfoI	RGCGCY	1 cut(s)	2840
BfuAI	ACCTGC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	9 cut(s)	729, 732, 809, 1429, 1591, 2840, 2861, 2891, 2937
BlnI	CCTAGG	1 cut(s)	2702
BlpI	GCTNAGC	3 cut(s)	1199, 1244, 2122
BlsI	GCNGC	9 cut(s)	730, 733, 810, 1430, 1592, 2841, 2862, 2892, 2938
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	1766, 2790
Bme18I	GGWCC	4 cut(s)	269, 2352, 2699, 2786
BmgT120I	GGNCC	5 cut(s)	269, 2352, 2699, 2786, 2792
BmiI	GGNNCC	7 cut(s)	270, 283, 1458, 2253, 2301, 2640, 2757
BmrFI	CCNGG	2 cut(s)	1766, 2790
BmsI	GCATC	5 cut(s)	130, 499, 2227, 2523, 2635
BpiI	GAAGAC	3 cut(s)	299, 2373, 2552
BplI	GAGNNNNNCTC	2 cut(s)	1567, 1599
BpmI	CTGGAG	2 cut(s)	1000, 2600
Bpu1102I	GCTNAGC	3 cut(s)	1199, 1244, 2122
BpuEI	CTTGAG	5 cut(s)	128, 778, 1256, 2342, 2876
BsaAI	YACGTR	2 cut(s)	240, 660
BsaBI	GATNNNNATC	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	2953
BsaJI	CCNNGG	2 cut(s)	812, 2702
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	4 cut(s)	278, 1902, 2412, 2932
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	4 cut(s)	1913, 2287, 2440, 2461
Bse21I	CCTNAGG	1 cut(s)	2931
Bse3DI	GCAATG	2 cut(s)	65, 2428
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	1766, 2790
BseDI	CCNNGG	2 cut(s)	812, 2702
BseGI	GGATG	4 cut(s)	145, 536, 2224, 2242
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	4 cut(s)	278, 1902, 2412, 2932
BseMI	GCAATG	2 cut(s)	65, 2428
BseMII	CTCAG	7 cut(s)	152, 764, 1213, 1392, 2513, 2777, 2945
BseNI	ACTGG	4 cut(s)	1913, 2287, 2440, 2461
BseRI	GAGGAG	2 cut(s)	2244, 2247
BseXI	GCAGC	4 cut(s)	740, 820, 2847, 2877
BseYI	CCCAGC	1 cut(s)	2716
BsgI	GTGCAG	1 cut(s)	2615
Bsh1236I	CGCG	1 cut(s)	2592
BshFI	GGCC	3 cut(s)	1685, 2793, 2936
BsiHKAI	GWGCWC	5 cut(s)	160, 1086, 1200, 1630, 2014
BsiSI	CCGG	3 cut(s)	391, 445, 904
BsiWI	CGTACG	2 cut(s)	240, 2819
BslFI	GGGAC	3 cut(s)	860, 1837, 1904
BslI	CCNNNNNNNGG	4 cut(s)	278, 1902, 2412, 2932
BsmAI	GTCTC	8 cut(s)	67, 192, 208, 239, 676, 1570, 2618, 2953
BsmBI	CGTCTC	2 cut(s)	192, 208
BsmFI	GGGAC	3 cut(s)	860, 1837, 1904
BsmI	GAATGC	3 cut(s)	1025, 2195, 2570
BsnI	GGCC	3 cut(s)	1685, 2793, 2936
Bso31I	GGTCTC	1 cut(s)	2953
Bsp1286I	GDGCHC	7 cut(s)	160, 1086, 1200, 1630, 2014, 2744, 2771
Bsp1407I	TGTACA	2 cut(s)	634, 2481
Bsp1720I	GCTNAGC	3 cut(s)	1199, 1244, 2122
Bsp19I	CCATGG	1 cut(s)	812
BspANI	GGCC	3 cut(s)	1685, 2793, 2936
BspCNI	CTCAG	7 cut(s)	153, 763, 1212, 1393, 2512, 2776, 2944
BspFNI	CGCG	1 cut(s)	2592
BspHI	TCATGA	2 cut(s)	82, 708
BspLI	GGNNCC	7 cut(s)	270, 283, 1458, 2253, 2301, 2640, 2757
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	8 cut(s)	509, 858, 914, 1014, 1752, 1756, 2691, 2892
BspQI	GCTCTTC	2 cut(s)	1015, 1223
BspTNI	GGTCTC	1 cut(s)	2953
BsrBI	CCGCTC	1 cut(s)	2305
BsrDI	GCAATG	2 cut(s)	65, 2428
BsrFI	RCCGGY	1 cut(s)	390
BsrGI	TGTACA	2 cut(s)	634, 2481
BsrI	ACTGG	4 cut(s)	1913, 2287, 2440, 2461
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	812, 2702
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	2651
BssT1I	CCWWGG	2 cut(s)	812, 2702
Bst2BI	CACGAG	1 cut(s)	2651
Bst2UI	CCWGG	2 cut(s)	1766, 2790
Bst4CI	ACNGT	8 cut(s)	562, 634, 670, 1546, 1731, 2200, 2335, 2638
Bst6I	CTCTTC	6 cut(s)	213, 1015, 1223, 1386, 1566, 1693
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	2 cut(s)	634, 2481
BstBAI	YACGTR	2 cut(s)	240, 660
BstC8I	GCNNGC	5 cut(s)	613, 2020, 2538, 2663, 2780
BstDSI	CCRYGG	1 cut(s)	812
BstF5I	GGATG	4 cut(s)	145, 536, 2224, 2242
BstFNI	CGCG	1 cut(s)	2592
BstH2I	RGCGCY	1 cut(s)	2840
BstHHI	GCGC	4 cut(s)	411, 2661, 2667, 2839
BstMAI	GTCTC	8 cut(s)	67, 192, 208, 239, 676, 1570, 2618, 2953
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 417, 944, 2001, 2775
BstNI	CCWGG	2 cut(s)	1766, 2790
BstNSI	RCATGY	2 cut(s)	2613, 2665
BstSCI	CCNGG	2 cut(s)	1764, 2788
BstSFI	CTRYAG	2 cut(s)	2033, 2745
BstSNI	TACGTA	1 cut(s)	240
BstUI	CGCG	1 cut(s)	2592
BstV1I	GCAGC	4 cut(s)	740, 820, 2847, 2877
BstV2I	GAAGAC	3 cut(s)	299, 2373, 2552
BstX2I	RGATCY	4 cut(s)	694, 863, 1006, 1744
BstXI	CCANNNNNNTGG	1 cut(s)	2778
BstYI	RGATCY	4 cut(s)	694, 863, 1006, 1744
Bsu36I	CCTNAGG	1 cut(s)	2931
BsuRI	GGCC	3 cut(s)	1685, 2793, 2936
BtgI	CCRYGG	1 cut(s)	812
BtsCI	GGATG	4 cut(s)	145, 536, 2224, 2242
BtsI	GCAGTG	2 cut(s)	1276, 2109
BtsIMutI	CAGTG	4 cut(s)	630, 1276, 2109, 2540
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	5 cut(s)	613, 2020, 2538, 2663, 2780
CaiI	CAGNNNCTG	1 cut(s)	2041
CciI	TCATGA	2 cut(s)	82, 708
CfoI	GCGC	4 cut(s)	411, 2661, 2667, 2839
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	5 cut(s)	269, 2352, 2699, 2786, 2792
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	9 cut(s)	241, 423, 635, 1542, 1622, 1649, 1957, 2482, 2820
CviQI	GTAC	9 cut(s)	241, 423, 635, 1542, 1622, 1649, 1957, 2482, 2820
DraI	TTTAAA	1 cut(s)	1483
Eam1104I	CTCTTC	6 cut(s)	213, 1015, 1223, 1386, 1566, 1693
EarI	CTCTTC	6 cut(s)	213, 1015, 1223, 1386, 1566, 1693
EciI	GGCGGA	1 cut(s)	2836
Ecl136II	GAGCTC	3 cut(s)	158, 1084, 1198
Eco105I	TACGTA	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	812, 2702
Eco24I	GRGCYC	5 cut(s)	160, 1086, 1200, 2744, 2771
Eco31I	GGTCTC	1 cut(s)	2953
Eco47I	GGWCC	4 cut(s)	269, 2352, 2699, 2786
Eco53kI	GAGCTC	3 cut(s)	158, 1084, 1198
Eco57I	CTGAAG	4 cut(s)	1326, 1847, 2075, 2564
Eco72I	CACGTG	1 cut(s)	660
Eco81I	CCTNAGG	1 cut(s)	2931
EcoICRI	GAGCTC	3 cut(s)	158, 1084, 1198
EcoO109I	RGGNCCY	1 cut(s)	2699
EcoRII	CCWGG	2 cut(s)	1764, 2788
EcoT14I	CCWWGG	2 cut(s)	812, 2702
EcoT22I	ATGCAT	4 cut(s)	1491, 2242, 2428, 2570
EcoT38I	GRGCYC	5 cut(s)	160, 1086, 1200, 2744, 2771
ErhI	CCWWGG	2 cut(s)	812, 2702
Esp3I	CGTCTC	2 cut(s)	192, 208
FalI	AAGNNNNNCTT	8 cut(s)	90, 122, 587, 619, 1265, 1297, 2358, 2390
FaqI	GGGAC	3 cut(s)	860, 1837, 1904
FauI	CCCGC	2 cut(s)	2059, 2934
FauNDI	CATATG	2 cut(s)	2024, 2428
FbaI	TGATCA	3 cut(s)	711, 2079, 2511
Fnu4HI	GCNGC	9 cut(s)	729, 732, 809, 1429, 1591, 2840, 2861, 2891, 2937
FokI	GGATG	4 cut(s)	152, 543, 2231, 2249
FriOI	GRGCYC	5 cut(s)	160, 1086, 1200, 2744, 2771
Fsp4HI	GCNGC	9 cut(s)	729, 732, 809, 1429, 1591, 2840, 2861, 2891, 2937
FspAI	RTGCGCAY	1 cut(s)	410
FspBI	CTAG	9 cut(s)	71, 513, 543, 794, 1077, 1112, 1334, 1412, 2703
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	4 cut(s)	410, 2660, 2666, 2838
GluI	GCNGC	9 cut(s)	729, 732, 809, 1429, 1591, 2840, 2861, 2891, 2937
GsaI	CCCAGC	1 cut(s)	2720
GsuI	CTGGAG	2 cut(s)	1000, 2600
HaeII	RGCGCY	1 cut(s)	2840
HaeIII	GGCC	3 cut(s)	1685, 2793, 2936
HapII	CCGG	3 cut(s)	391, 445, 904
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	4 cut(s)	411, 2661, 2667, 2839
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	4 cut(s)	409, 2659, 2665, 2837
HinP1I	GCGC	4 cut(s)	409, 2659, 2665, 2837
HincII	GTYRAC	1 cut(s)	1143
HindII	GTYRAC	1 cut(s)	1143
HindIII	AAGCTT	3 cut(s)	104, 1246, 2468
HpaII	CCGG	3 cut(s)	391, 445, 904
HphI	GGTGA	2 cut(s)	2506, 2542
Hpy166II	GTNNAC	7 cut(s)	237, 276, 442, 799, 1055, 1143, 1177
Hpy8I	GTNNAC	7 cut(s)	237, 276, 442, 799, 1055, 1143, 1177
Hpy99I	CGWCG	2 cut(s)	472, 2890
HpyCH4III	ACNGT	8 cut(s)	562, 634, 670, 1546, 1731, 2200, 2335, 2638
HpyCH4IV	ACGT	3 cut(s)	201, 239, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 417, 944, 2001, 2775
HpySE526I	ACGT	3 cut(s)	201, 239, 659
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	4 cut(s)	409, 2659, 2665, 2837
Ksp22I	TGATCA	3 cut(s)	711, 2079, 2511
LguI	GCTCTTC	2 cut(s)	1015, 1223
Lsp1109I	GCAGC	4 cut(s)	740, 820, 2847, 2877
LweI	GCATC	5 cut(s)	130, 499, 2227, 2523, 2635
MaeI	CTAG	9 cut(s)	71, 513, 543, 794, 1077, 1112, 1334, 1412, 2703
MaeII	ACGT	3 cut(s)	201, 239, 659
MaeIII	GTNAC	4 cut(s)	770, 1040, 1929, 2226
MbiI	CCGCTC	1 cut(s)	2305
MflI	RGATCY	4 cut(s)	694, 863, 1006, 1744
MhlI	GDGCHC	7 cut(s)	160, 1086, 1200, 1630, 2014, 2744, 2771
MlyI	GAGTC	7 cut(s)	473, 714, 963, 1263, 1886, 2047, 2542
MmeI	TCCRAC	4 cut(s)	508, 1235, 1897, 2783
Mph1103I	ATGCAT	4 cut(s)	1491, 2242, 2428, 2570
MroXI	GAANNNNTTC	3 cut(s)	78, 128, 2370
MslI	CAYNNNNRTG	2 cut(s)	435, 2385
MspA1I	CMGCKG	3 cut(s)	731, 1431, 2842
MspI	CCGG	3 cut(s)	391, 445, 904
MspR9I	CCNGG	2 cut(s)	1766, 2790
Mva1269I	GAATGC	3 cut(s)	1025, 2195, 2570
MvaI	CCWGG	2 cut(s)	1766, 2790
MvnI	CGCG	1 cut(s)	2592
MwoI	GCNNNNNNNGC	5 cut(s)	11, 417, 944, 2001, 2775
NcoI	CCATGG	1 cut(s)	812
NdeI	CATATG	2 cut(s)	2024, 2428
NlaIV	GGNNCC	7 cut(s)	270, 283, 1458, 2253, 2301, 2640, 2757
NmeAIII	GCCGAG	1 cut(s)	2693
NmuCI	GTSAC	1 cut(s)	1040
NsbI	TGCGCA	1 cut(s)	410
NsiI	ATGCAT	4 cut(s)	1491, 2242, 2428, 2570
NspI	RCATGY	2 cut(s)	2613, 2665
PaeI	GCATGC	1 cut(s)	2665
PagI	TCATGA	2 cut(s)	82, 708
PaqCI	CACCTGC	1 cut(s)	19
PciI	ACATGT	1 cut(s)	2609
PciSI	GCTCTTC	2 cut(s)	1015, 1223
PcsI	WCGNNNNNNNCGW	1 cut(s)	596
PctI	GAATGC	3 cut(s)	1025, 2195, 2570
PdmI	GAANNNNTTC	3 cut(s)	78, 128, 2370
PfeI	GAWTC	6 cut(s)	1858, 2054, 2460, 2506, 2595, 2966
Pfl23II	CGTACG	2 cut(s)	240, 2819
PflMI	CCANNNNNTGG	1 cut(s)	2412
PfoI	TCCNGGA	1 cut(s)	1764
PkrI	GCNGC	9 cut(s)	730, 733, 810, 1430, 1592, 2841, 2862, 2892, 2938
PleI	GAGTC	7 cut(s)	472, 713, 962, 1263, 1886, 2046, 2542
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	7 cut(s)	472, 713, 962, 1263, 1886, 2046, 2542
Ppu21I	YACGTR	2 cut(s)	240, 660
PpuMI	RGGWCCY	1 cut(s)	2699
PscI	ACATGT	1 cut(s)	2609
Psp124BI	GAGCTC	3 cut(s)	160, 1086, 1200
Psp5II	RGGWCCY	1 cut(s)	2699
Psp6I	CCWGG	2 cut(s)	1764, 2788
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	2716
PspGI	CCWGG	2 cut(s)	1764, 2788
PspLI	CGTACG	2 cut(s)	240, 2819
PspN4I	GGNNCC	7 cut(s)	270, 283, 1458, 2253, 2301, 2640, 2757
PspPI	GGNCC	5 cut(s)	269, 2352, 2699, 2786, 2792
PspPPI	RGGWCCY	1 cut(s)	2699
PstNI	CAGNNNCTG	1 cut(s)	2041
PsuI	RGATCY	4 cut(s)	694, 863, 1006, 1744
RsaI	GTAC	9 cut(s)	242, 424, 636, 1543, 1623, 1650, 1958, 2483, 2821
RsaNI	GTAC	9 cut(s)	241, 423, 635, 1542, 1622, 1649, 1957, 2482, 2820
RseI	CAYNNNNRTG	2 cut(s)	435, 2385
SacI	GAGCTC	3 cut(s)	160, 1086, 1200
SapI	GCTCTTC	2 cut(s)	1015, 1223
SatI	GCNGC	9 cut(s)	729, 732, 809, 1429, 1591, 2840, 2861, 2891, 2937
Sau96I	GGNCC	5 cut(s)	269, 2352, 2699, 2786, 2792
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	7 cut(s)	473, 714, 963, 1263, 1886, 2047, 2542
ScrFI	CCNGG	2 cut(s)	1766, 2790
SduI	GDGCHC	7 cut(s)	160, 1086, 1200, 1630, 2014, 2744, 2771
SfaNI	GCATC	5 cut(s)	130, 499, 2227, 2523, 2635
SfcI	CTRYAG	2 cut(s)	2033, 2745
SinI	GGWCC	4 cut(s)	269, 2352, 2699, 2786
SmiMI	CAYNNNNRTG	2 cut(s)	435, 2385
SmlI	CTYRAG	5 cut(s)	107, 757, 1271, 2321, 2855
SmoI	CTYRAG	5 cut(s)	107, 757, 1271, 2321, 2855
SnaBI	TACGTA	1 cut(s)	240
SphI	GCATGC	1 cut(s)	2665
SspMI	CTAG	9 cut(s)	71, 513, 543, 794, 1077, 1112, 1334, 1412, 2703
SstI	GAGCTC	3 cut(s)	160, 1086, 1200
StyD4I	CCNGG	2 cut(s)	1764, 2788
StyI	CCWWGG	2 cut(s)	812, 2702
TaaI	ACNGT	8 cut(s)	562, 634, 670, 1546, 1731, 2200, 2335, 2638
TaiI	ACGT	3 cut(s)	204, 242, 662
TaqI	TCGA	4 cut(s)	216, 957, 2061, 2169
TatI	WGTACW	4 cut(s)	422, 634, 1541, 2481
TauI	GCSGC	5 cut(s)	734, 1431, 1593, 2842, 2939
TfiI	GAWTC	6 cut(s)	1858, 2054, 2460, 2506, 2595, 2966
TscAI	CASTG	4 cut(s)	637, 1283, 2116, 2547
TseFI	GTSAC	1 cut(s)	1040
TseI	GCWGC	4 cut(s)	728, 808, 2860, 2890
Tsp45I	GTSAC	1 cut(s)	1040
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	637, 1283, 2116, 2547
Van91I	CCANNNNNTGG	1 cut(s)	2412
VpaK11BI	GGWCC	4 cut(s)	269, 2352, 2699, 2786
XapI	RAATTY	2 cut(s)	1478, 2046
XceI	RCATGY	2 cut(s)	2613, 2665
XcmI	CCANNNNNNNNNTGG	4 cut(s)	315, 1967, 2471, 2650
XmaJI	CCTAGG	1 cut(s)	2702
XmnI	GAANNNNTTC	3 cut(s)	78, 128, 2370
XspI	CTAG	9 cut(s)	71, 513, 543, 794, 1077, 1112, 1334, 1412, 2703
ZraI	GACGTC	1 cut(s)	202
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	4 cut(s)	1491, 2242, 2428, 2570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.