Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

49983971 .. 49985724

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCTCTTGTAGTGAGTCCATACATGAAGATCTACAGAAGATTCAAGCCACACCTTCTCATGGTTTTGGCACAGATCGGCCATGCATGTCTCTACTTCATTACTGATGCATCCTTCAATCATGGGATGAACCCTCACGTCTTTGTAACCTATCGACATATAGTTGGTGGCTTAGTCATGTTTCCATTTGCCTATTTTCTTGAAGGAAAAGCAAGGCCAAAGTTGACTCTAGCATTGTTTATGGAGATATTTGTGATTTCCCTTCTTGGGGTTAGCTTAACCCTTAATATGTATTTTGCAAGCCTGAAGTACACATCTTCAAGCTTCGTCACGTCAATAGCCAATACCATACCATCCCTGACTTTCATGATTGCAGTCATACTCAGGATGGAGGCTCTAGATGTAAGGAATCCGCGTGGAATAGCTAAACTCTTGGGAACATTAATATCTCTGGCTGGGGTCATCACCATGACTTCGTACAAAGGACCTGCAATACAAAGCTTCTCCGGAGCATCACAACACATAAGAAGTAATTTTGTTCACAAAAGCTGGACAAAGGGTTCAATCCTTGTGACTGCAAGTTGTATTACATGGTCCATATGGTACATAATGCAGGGGATCACATTGAAGAAATATCCTGCACAACTGTCACTAACTACATGGATCAATTGTATCGGTGCAGCACAATCCGCTGTGTTCACAGTTATCATACAGCACAAACGGGCAGCATGGACAATTACATACAACAATGATTTCTGGTCCATAATATATGCTGGAGTTGTATGCTCAGGTATAACAATCTTCATTCAACTATGGTGTACAAAACAAAAAGGACCCGTCTTTGTGACCATGTTCAGTCCTCTTGCAACAGCATTAGTGGCTATTCTAGCTTACTTCATTCTCGGCGAAAAGCTGCACATTGGCAGAATAGTGGGAGCGGTCGTTATCATTATCGGTCTATACTTGGTCTTATGGGGCAAAGATAGAGATCAAAATCATTTCAAATCCCAAGAGCAACCTACTGTGATTAGTGATAACCAGAAGGAACCCAAGATGCAAGTGGGATCTTCAGCAGAAAGACAGGTCCTCCAAATGGACCTTGAGGAAAAAGATAAAACCCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

375

Amino Acids

41.91

Weight (kDa)

9.65

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 157	1.2e-12	EamA-like transporter family
EamA	PF00892	186 - 324	1.4e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	938
AccII	CGCG	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	506
AciI	CCGC	3 cut(s)	413, 690, 938
AclWI	GGATC	3 cut(s)	626, 671, 1072
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	326, 1053
AfaI	GTAC	4 cut(s)	311, 479, 605, 820
AfiI	CCNNNNNNNGG	4 cut(s)	61, 267, 268, 1093
AgsI	TTSAA	8 cut(s)	46, 118, 203, 321, 564, 628, 809, 1003
AjiI	CACGTC	2 cut(s)	139, 333
AloI	GAACNNNNNNTCC	2 cut(s)	544, 576
AluBI	AGCT	7 cut(s)	276, 324, 425, 501, 549, 890, 913
AluI	AGCT	7 cut(s)	276, 324, 425, 501, 549, 890, 913
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	3 cut(s)	626, 671, 1072
Aor13HI	TCCGGA	1 cut(s)	506
AoxI	GGCC	2 cut(s)	79, 215
ApeKI	GCWGC	3 cut(s)	680, 725, 913
AseI	ATTAAT	1 cut(s)	443
AspS9I	GGNCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
BbvI	GCAGC	3 cut(s)	692, 737, 900
BccI	CCATC	2 cut(s)	361, 382
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	230, 398, 887
BfmI	CTRYAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	3 cut(s)	681, 726, 914
BlsI	GCNGC	3 cut(s)	682, 727, 915
Bme18I	GGWCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
BmgBI	CACGTC	2 cut(s)	139, 333
BmgT120I	GGNCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
BmiI	GGNNCC	2 cut(s)	835, 1047
BmsI	GCATC	4 cut(s)	97, 119, 521, 1044
BpmI	CTGGAG	1 cut(s)	795
Bpu10I	CCTNAGC	1 cut(s)	787
BpuEI	CTTGAG	1 cut(s)	1121
BsaBI	GATNNNNATC	2 cut(s)	987, 993
BsaJI	CCNNGG	1 cut(s)	1120
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	4 cut(s)	927, 957, 1071, 1101
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 267, 268, 1093
Bse8I	GATNNNNATC	2 cut(s)	987, 993
BseAI	TCCGGA	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	1120
BseGI	GGATG	4 cut(s)	110, 132, 353, 393
BseJI	GATNNNNATC	2 cut(s)	987, 993
BseLI	CCNNNNNNNGG	4 cut(s)	61, 267, 268, 1093
BseMII	CTCAG	2 cut(s)	397, 801
BseXI	GCAGC	3 cut(s)	692, 737, 900
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	3 cut(s)	624, 699, 899
Bsh1236I	CGCG	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	942
BshFI	GGCC	2 cut(s)	81, 217
BsiEI	CGRYCG	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	4 cut(s)	61, 267, 268, 1093
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	81, 217
Bsp13I	TCCGGA	1 cut(s)	506
Bsp1407I	TGTACA	1 cut(s)	818
Bsp143I	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
Bsp19I	CCATGG	1 cut(s)	1120
BspACI	CCGC	3 cut(s)	413, 690, 938
BspANI	GGCC	2 cut(s)	81, 217
BspCNI	CTCAG	2 cut(s)	396, 800
BspEI	TCCGGA	1 cut(s)	506
BspFNI	CGCG	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	835, 1047
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	3 cut(s)	626, 671, 1072
BsrBI	CCGCTC	1 cut(s)	938
BsrGI	TGTACA	1 cut(s)	818
BssECI	CCNNGG	1 cut(s)	1120
BssMI	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
BssT1I	CCWWGG	1 cut(s)	1120
Bst4CI	ACNGT	3 cut(s)	648, 703, 1024
BstAUI	TGTACA	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	172, 383, 787
BstDSI	CCRYGG	1 cut(s)	1120
BstF5I	GGATG	4 cut(s)	110, 132, 353, 393
BstFNI	CGCG	1 cut(s)	415
BstKTI	GATC	6 cut(s)	33, 78, 621, 666, 991, 1067
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
BstMCI	CGRYCG	1 cut(s)	942
BstMWI	GCNNNNNNNGC	3 cut(s)	689, 878, 887
BstNSI	RCATGY	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	692, 737, 900
BstX2I	RGATCY	2 cut(s)	30, 1064
BstYI	RGATCY	2 cut(s)	30, 1064
BsuRI	GGCC	2 cut(s)	81, 217
BtgI	CCRYGG	1 cut(s)	1120
BtrI	CACGTC	2 cut(s)	139, 333
BtsCI	GGATG	4 cut(s)	110, 132, 353, 393
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	301
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
Csp6I	GTAC	4 cut(s)	310, 478, 604, 819
CviQI	GTAC	4 cut(s)	310, 478, 604, 819
DdeI	CTNAG	3 cut(s)	172, 383, 787
DpnI	GATC	6 cut(s)	32, 77, 620, 665, 990, 1066
DpnII	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
EaeI	YGGCCR	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	1120
Eco47I	GGWCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
Eco57I	CTGAAG	2 cut(s)	326, 1053
EcoO109I	RGGNCCY	3 cut(s)	485, 833, 1084
EcoT14I	CCWWGG	1 cut(s)	1120
EcoT22I	ATGCAT	2 cut(s)	88, 112
ErhI	CCWWGG	1 cut(s)	1120
FauNDI	CATATG	1 cut(s)	599
Fnu4HI	GCNGC	3 cut(s)	681, 726, 914
FokI	GGATG	4 cut(s)	97, 139, 340, 400
Fsp4HI	GCNGC	3 cut(s)	681, 726, 914
FspBI	CTAG	3 cut(s)	230, 398, 887
GluI	GCNGC	3 cut(s)	681, 726, 914
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	795
HaeIII	GGCC	2 cut(s)	81, 217
HapII	CCGG	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	2 cut(s)	322, 499
HinfI	GANTC	4 cut(s)	16, 42, 226, 409
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	5 cut(s)	225, 312, 541, 699, 819
Hpy188III	TCNNGA	5 cut(s)	200, 367, 385, 398, 507
Hpy8I	GTNNAC	5 cut(s)	225, 312, 541, 699, 819
HpyAV	CCTTC	5 cut(s)	65, 124, 197, 272, 1036
HpyCH4III	ACNGT	3 cut(s)	648, 703, 1024
HpyCH4IV	ACGT	2 cut(s)	138, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	689, 878, 887
HpyF3I	CTNAG	3 cut(s)	172, 383, 787
HpySE526I	ACGT	2 cut(s)	138, 332
Kpn2I	TCCGGA	1 cut(s)	506
Kzo9I	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
LmnI	GCTCC	2 cut(s)	509, 935
Lsp1109I	GCAGC	3 cut(s)	692, 737, 900
LweI	GCATC	4 cut(s)	97, 119, 521, 1044
MaeI	CTAG	3 cut(s)	230, 398, 887
MaeII	ACGT	2 cut(s)	138, 332
MaeIII	GTNAC	5 cut(s)	145, 328, 571, 648, 844
MalI	GATC	6 cut(s)	32, 77, 620, 665, 990, 1066
MbiI	CCGCTC	1 cut(s)	938
MboI	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
MboII	GAAGA	6 cut(s)	40, 51, 309, 640, 793, 1059
MfeI	CAATTG	1 cut(s)	667
MflI	RGATCY	2 cut(s)	30, 1064
MluCI	AATT	3 cut(s)	532, 667, 735
MlyI	GAGTC	2 cut(s)	25, 220
MnlI	CCTC	5 cut(s)	144, 385, 870, 1096, 1097
Mph1103I	ATGCAT	2 cut(s)	88, 112
MroI	TCCGGA	1 cut(s)	506
MseI	TTAA	3 cut(s)	278, 285, 443
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	667
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	689, 878, 887
NcoI	CCATGG	1 cut(s)	1120
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
NlaIV	GGNNCC	2 cut(s)	835, 1047
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	4 cut(s)	328, 571, 648, 844
NsiI	ATGCAT	2 cut(s)	88, 112
NspI	RCATGY	1 cut(s)	90
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	42, 409
PkrI	GCNGC	3 cut(s)	682, 727, 915
PleI	GAGTC	2 cut(s)	24, 220
PpsI	GAGTC	2 cut(s)	24, 220
PpuMI	RGGWCCY	3 cut(s)	485, 833, 1084
PshBI	ATTAAT	1 cut(s)	443
Psp5II	RGGWCCY	3 cut(s)	485, 833, 1084
PspFI	CCCAGC	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	835, 1047
PspPI	GGNCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
PspPPI	RGGWCCY	3 cut(s)	485, 833, 1084
PsuI	RGATCY	2 cut(s)	30, 1064
RsaI	GTAC	4 cut(s)	311, 479, 605, 820
RsaNI	GTAC	4 cut(s)	310, 478, 604, 819
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	278, 285, 443
SatI	GCNGC	3 cut(s)	681, 726, 914
Sau3AI	GATC	6 cut(s)	30, 75, 618, 663, 988, 1064
Sau96I	GGNCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
SchI	GAGTC	2 cut(s)	25, 220
SfaNI	GCATC	4 cut(s)	97, 119, 521, 1044
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	1100
SmoI	CTYRAG	1 cut(s)	1100
Sse9I	AATT	3 cut(s)	532, 667, 735
SsiI	CCGC	3 cut(s)	413, 690, 938
SspMI	CTAG	3 cut(s)	230, 398, 887
StyI	CCWWGG	1 cut(s)	1120
TaaI	ACNGT	3 cut(s)	648, 703, 1024
TaiI	ACGT	2 cut(s)	141, 335
TaqI	TCGA	1 cut(s)	154
TaqII	GACCGA	1 cut(s)	944
TasI	AATT	3 cut(s)	532, 667, 735
TatI	WGTACW	2 cut(s)	309, 818
TfiI	GAWTC	2 cut(s)	42, 409
Tru1I	TTAA	3 cut(s)	278, 285, 443
Tru9I	TTAA	3 cut(s)	278, 285, 443
TseFI	GTSAC	4 cut(s)	328, 571, 648, 844
TseI	GCWGC	3 cut(s)	680, 725, 913
Tsp45I	GTSAC	4 cut(s)	328, 571, 648, 844
TspDTI	ATGAA	6 cut(s)	41, 88, 143, 355, 793, 886
VpaK11BI	GGWCC	6 cut(s)	485, 594, 759, 833, 1084, 1096
VspI	ATTAAT	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1057
XspI	CTAG	3 cut(s)	230, 398, 887
Zsp2I	ATGCAT	2 cut(s)	88, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.