Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

58373051 .. 58375486

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAGTGCTATACCAGCTTGTCAAGAATTGAAATAGAAGAAGGAAGAAGGGGACTAGAGGAGGCTATGGCACAAAAGGCGAGTTCACATGTGGGAGTTTGCAGGAAGTTCAAGCCTCACTTCCTCATGGTTTTGGCTCAAATGGGCTACACATTTCTTTATTTTATCACAGAAGCTTCCTTCAATCATGGGATGAACCCTCATGTCTATATTACTTATCGGCATATTGTTTCCGGCGTAGTGATGCTCCCTTTTGCCTATTTTCTTGAAAGAAAAGAAAGACCGAAGCTCACATTTGCGCTTTTCTTGGAACTTTTTGTTCTTTCTCTTCTGGGGGTGGGCTTGACTTTAAACATGTATTTTGCAAGCTTAAGATACACCTCTCCAACCTTCCTTGCATCAATGGTCAACACAATAGCTTCTGTCACTTTCGTAATTGCCGTTGCCCTCAGGTTGGAGGCTCTTAATCTTCGAAATCTTCGTGGGTTAGCAAAAGTTTTGGGCACCCTAGTCTCTTTAGCAGGAGTAATGACCATGACTTTGTACAAGGGACCTATTGTGAGAAATCTATGGCGTCCACTAATCCATATTGAAGGAAAATCCTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTCACTGTTGCTAGCTGCGTAACTTGGTCTGTCTGGTACATTATGCAGGCAATCACGTTGAAAAGATATCCTGCACAACTGTCACTGACTACATGGATGAGCTTCATAGGGGCAGCACAGTCAGCTGTGTTCACTGTGTGTATTGAACATAGACGAGCTGCTTGGACCGTTGGATTCAACATTGACCTCTGGTCCATTCTGTACGCCGGAGTGGTGTGCTCTGGTCTAGTAATCTTCATTCAACTATGGTGCACAGAAGAAAAAGGACCAGTCTTTGTGACCATGTTCAATCCTGTTTCAACAATCTTGGTGGCAATTCTAGCATACTTTGTGCTTGGTGAAAGACTTTACATCGGCAGCATATTAGGGGCAGCTATTGTCATTGTTGGCCTATACTTGCTGTTGTGGGGGAAAGAAGGTGATGAAGTTTACATCATTAAGTCTGAAGACTCATCTGATCAGACATACGAAGAGGAGAAAGATGACAGAATACGAACAATCACTTCAGTCAAGAAGGATGCATTACATGGTGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

392

Amino Acids

44.02

Weight (kDa)

8.88

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	40 - 178	9.1e-09	EamA-like transporter family
EamA	PF00892	209 - 347	3.9e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AcuI	CTGAAG	2 cut(s)	1101, 1125
AcyI	GRCGYC	1 cut(s)	574
AdeI	CACNNNGTG	1 cut(s)	774
AfaI	GTAC	3 cut(s)	545, 674, 839
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	370
AflIII	ACRYGT	2 cut(s)	88, 354
AhdI	GACNNNNNGTC	1 cut(s)	826
Alw21I	GWGCWC	2 cut(s)	857, 890
Alw26I	GTCTC	1 cut(s)	517
Alw44I	GTGCAC	1 cut(s)	886
AoxI	GGCC	1 cut(s)	1024
ApaLI	GTGCAC	1 cut(s)	886
ApeKI	GCWGC	5 cut(s)	651, 749, 794, 993, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	4 cut(s)	551, 801, 828, 902
AsuHPI	GGTGA	2 cut(s)	986, 1067
AsuII	TTCGAA	1 cut(s)	472
AsuNHI	GCTAGC	1 cut(s)	647
AvaII	GGWCC	4 cut(s)	551, 801, 828, 902
AxyI	CCTNAGG	1 cut(s)	449
BaeGI	GKGCMC	2 cut(s)	506, 890
BanI	GGYRCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	1089
Bbv12I	GWGCWC	2 cut(s)	857, 890
BbvI	GCAGC	5 cut(s)	638, 761, 781, 1005, 1019
BccI	CCATC	1 cut(s)	614
BceAI	ACGGC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	1093
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	5 cut(s)	56, 509, 648, 863, 956
BfrI	CTTAAG	1 cut(s)	370
BisI	GCNGC	5 cut(s)	652, 750, 795, 994, 1008
BlsI	GCNGC	5 cut(s)	653, 751, 796, 995, 1009
Bme18I	GGWCC	4 cut(s)	551, 801, 828, 902
BmeRI	GACNNNNNGTC	1 cut(s)	826
BmgT120I	GGNCC	4 cut(s)	551, 801, 828, 902
BmiI	GGNNCC	2 cut(s)	505, 552
BmsI	GCATC	3 cut(s)	234, 407, 1144
BmtI	GCTAGC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	1089
Bpu14I	TTCGAA	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	623, 905
Bse21I	CCTNAGG	1 cut(s)	449
BseGI	GGATG	4 cut(s)	198, 606, 738, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	623, 905
BseRI	GAGGAG	2 cut(s)	74, 1124
BseSI	GKGCMC	2 cut(s)	506, 890
BseXI	GCAGC	5 cut(s)	638, 761, 781, 1005, 1019
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	1 cut(s)	1026
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	857, 890
BsiSI	CCGG	2 cut(s)	234, 843
BslFI	GGGAC	2 cut(s)	66, 564
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	2 cut(s)	66, 564
BsnI	GGCC	1 cut(s)	1026
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	506, 857, 890
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	1093
BspANI	GGCC	1 cut(s)	1026
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	505, 552
BspOI	GCTAGC	1 cut(s)	651
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	623, 905
BssMI	GATC	1 cut(s)	1093
BssNI	GRCGYC	1 cut(s)	574
Bst4CI	ACNGT	5 cut(s)	643, 717, 756, 772, 805
Bst6I	CTCTTC	2 cut(s)	333, 1101
BstACI	GRCGYC	1 cut(s)	574
BstAFI	CTTAAG	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	367, 649, 684
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	4 cut(s)	198, 606, 738, 1159
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	1096
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	1093
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 77, 758, 956
BstNSI	RCATGY	2 cut(s)	92, 358
BstSLI	GKGCMC	2 cut(s)	506, 890
BstV1I	GCAGC	5 cut(s)	638, 761, 781, 1005, 1019
BstV2I	GAAGAC	1 cut(s)	1089
Bsu36I	CCTNAGG	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	1026
BtsCI	GGATG	4 cut(s)	198, 606, 738, 1159
BtsIMutI	CAGTG	3 cut(s)	639, 719, 768
Cac8I	GCNNGC	3 cut(s)	367, 649, 684
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	4 cut(s)	551, 801, 828, 902
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	544, 673, 838
CspCI	CAANNNNNGTGG	2 cut(s)	927, 962
CviQI	GTAC	3 cut(s)	544, 673, 838
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	1095
DpnII	GATC	1 cut(s)	1093
DraI	TTTAAA	1 cut(s)	351
DraIII	CACNNNGTG	1 cut(s)	774
DriI	GACNNNNNGTC	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	333, 1101
Eam1105I	GACNNNNNGTC	1 cut(s)	826
EarI	CTCTTC	2 cut(s)	333, 1101
Eco32I	GATATC	1 cut(s)	704
Eco47I	GGWCC	4 cut(s)	551, 801, 828, 902
Eco57I	CTGAAG	2 cut(s)	1101, 1125
Eco81I	CCTNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	704
EcoT22I	ATGCAT	1 cut(s)	1159
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	66, 564
FbaI	TGATCA	1 cut(s)	1093
Fnu4HI	GCNGC	5 cut(s)	652, 750, 795, 994, 1008
FokI	GGATG	4 cut(s)	205, 593, 745, 1166
Fsp4HI	GCNGC	5 cut(s)	652, 750, 795, 994, 1008
FspBI	CTAG	5 cut(s)	56, 509, 648, 863, 956
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	5 cut(s)	652, 750, 795, 994, 1008
HaeIII	GGCC	1 cut(s)	1026
HapII	CCGG	2 cut(s)	234, 843
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	574
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	2 cut(s)	174, 367
HinfI	GANTC	2 cut(s)	810, 1085
HpaII	CCGG	2 cut(s)	234, 843
HphI	GGTGA	2 cut(s)	986, 1067
Hpy166II	GTNNAC	7 cut(s)	86, 409, 578, 768, 888, 1066, 1169
Hpy188I	TCNGA	3 cut(s)	1081, 1093, 1098
Hpy188III	TCNNGA	3 cut(s)	24, 266, 1147
Hpy8I	GTNNAC	7 cut(s)	86, 409, 578, 768, 888, 1066, 1169
HpyAV	CCTTC	8 cut(s)	35, 42, 190, 400, 587, 619, 1046, 1144
HpyCH4III	ACNGT	5 cut(s)	643, 717, 756, 772, 805
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	7 cut(s)	102, 365, 398, 682, 710, 888, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 77, 758, 956
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	692
Hsp92I	GRCGYC	1 cut(s)	574
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	1093
Kzo9I	GATC	1 cut(s)	1093
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	5 cut(s)	638, 761, 781, 1005, 1019
LweI	GCATC	3 cut(s)	234, 407, 1144
MaeI	CTAG	5 cut(s)	56, 509, 648, 863, 956
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	4 cut(s)	424, 655, 717, 913
MalI	GATC	1 cut(s)	1095
MboI	GATC	1 cut(s)	1093
MboII	GAAGA	9 cut(s)	50, 57, 320, 461, 470, 862, 905, 1094, 1118
MhlI	GDGCHC	3 cut(s)	506, 857, 890
MluCI	AATT	4 cut(s)	27, 435, 633, 951
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	3 cut(s)	410, 435, 787
Mph1103I	ATGCAT	1 cut(s)	1159
MseI	TTAA	4 cut(s)	350, 371, 465, 1074
MspA1I	CMGCKG	1 cut(s)	761
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	2 cut(s)	234, 843
MwoI	GCNNNNNNNGC	4 cut(s)	15, 77, 758, 956
NdeII	GATC	1 cut(s)	1093
NheI	GCTAGC	1 cut(s)	647
NlaIV	GGNNCC	2 cut(s)	505, 552
NmuCI	GTSAC	3 cut(s)	424, 717, 913
NsiI	ATGCAT	1 cut(s)	1159
NspI	RCATGY	2 cut(s)	92, 358
NspV	TTCGAA	1 cut(s)	472
PciI	ACATGT	2 cut(s)	88, 354
PcsI	WCGNNNNNNNCGW	2 cut(s)	438, 478
PfeI	GAWTC	1 cut(s)	810
PkrI	GCNGC	5 cut(s)	653, 751, 796, 995, 1009
PleI	GAGTC	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	1079
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	88, 354
Psp5II	RGGWCCY	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	505, 552
PspPI	GGNCC	4 cut(s)	551, 801, 828, 902
PspPPI	RGGWCCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	3 cut(s)	545, 674, 839
RsaNI	GTAC	3 cut(s)	544, 673, 838
SaqAI	TTAA	4 cut(s)	350, 371, 465, 1074
SatI	GCNGC	5 cut(s)	652, 750, 795, 994, 1008
Sau3AI	GATC	1 cut(s)	1093
Sau96I	GGNCC	4 cut(s)	551, 801, 828, 902
SchI	GAGTC	1 cut(s)	1079
SduI	GDGCHC	3 cut(s)	506, 857, 890
SfaNI	GCATC	3 cut(s)	234, 407, 1144
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	4 cut(s)	551, 801, 828, 902
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	4 cut(s)	27, 435, 633, 951
SspMI	CTAG	5 cut(s)	56, 509, 648, 863, 956
TaaI	ACNGT	5 cut(s)	643, 717, 756, 772, 805
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	472
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	27, 435, 633, 951
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	810
Tru1I	TTAA	4 cut(s)	350, 371, 465, 1074
Tru9I	TTAA	4 cut(s)	350, 371, 465, 1074
TscAI	CASTG	3 cut(s)	646, 726, 775
TseFI	GTSAC	3 cut(s)	424, 717, 913
TseI	GCWGC	5 cut(s)	651, 749, 794, 993, 1007
Tsp45I	GTSAC	3 cut(s)	424, 717, 913
TspDTI	ATGAA	5 cut(s)	17, 209, 730, 862, 1074
TspRI	CASTG	3 cut(s)	646, 726, 775
Vha464I	CTTAAG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	886
VpaK11BI	GGWCC	4 cut(s)	551, 801, 828, 902
XceI	RCATGY	2 cut(s)	92, 358
XspI	CTAG	5 cut(s)	56, 509, 648, 863, 956
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.