Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

21062937 .. 21065295

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1215900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCACAGGAGTTACGTAGTAGTAACCTCAAGGGACTATACAGGAAGTTCAAGCCACACTTCCTCATGCTTTTAGCACAGATGGGATATACATTTCTGTATTTTATAACTGAAGCGTCCTTCAATCATGGGATGAACCCTCACGTCTACATAACTTATCGACATATTGTGTCTGGCATAGTGATGCTCCCTTTTGCTTATTTTCTTGAAAGGTTGGAGGTTCTTTACCTTCAAAATTCTCGAGGGTTAGCAAAAGTTTTCGGTACCCTATTCTCCTTGGCTGGTGTGATGACCATGACATTGTACAAGGGGCCTAGTATTAGAAATTTATGGCCTGCACTATTCCATGTTGAAGGAAAATCCTCCATCCATGAGAACTGGTTGAAGGGTTCTACACTAACTGTTGCAAGCTGCATAACATGGTCGGCATGGTACATCATGCAGAAAAGACCAGTTTTTGTGACCATGTTTAATCCTGTTTCAACAATTTTGGTGGCTGTTTTAGCTTACTTTGTCCTGGGTGAAAGACTTTATACTGGCAGCATAGTAGGGGTCTTCATTGTCATCCTTGGGCTGTACTTGCTGCTGTGGAGAAAAGATAGTGATGAAGTTTACGTCAAGGCGGAAGAGTCATCTTATCAGACAACACATGAAGAGCATAAGGATAATGGCATACAGAAAATCACTTCAGCTAACAAGAATGTGCAGCATGGTGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

241

Amino Acids

27.49

Weight (kDa)

9.28

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	623
AcsI	RAATTY	2 cut(s)	235, 325
AcuI	CTGAAG	2 cut(s)	132, 672
AfaI	GTAC	4 cut(s)	265, 305, 434, 578
AgsI	TTSAA	7 cut(s)	52, 124, 209, 233, 353, 385, 483
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	516
AluBI	AGCT	3 cut(s)	411, 506, 692
AluI	AGCT	3 cut(s)	411, 506, 692
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	2 cut(s)	311, 332
ApeKI	GCWGC	4 cut(s)	411, 540, 583, 706
ApoI	RAATTY	2 cut(s)	235, 325
Asp718I	GGTACC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	547
BbvI	GCAGC	4 cut(s)	398, 552, 570, 718
BccI	CCATC	2 cut(s)	76, 374
BciT130I	CCWGG	1 cut(s)	518
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	4 cut(s)	412, 541, 584, 707
BlsI	GCNGC	4 cut(s)	413, 542, 585, 708
Bme1390I	CCNGG	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	265, 312
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	276, 517, 568
Bse1I	ACTGG	3 cut(s)	383, 452, 541
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	3 cut(s)	276, 517, 568
BseGI	GGATG	3 cut(s)	138, 366, 564
BseNI	ACTGG	3 cut(s)	383, 452, 541
BseXI	GCAGC	4 cut(s)	398, 552, 570, 718
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	313, 334
BshNI	GGYRCC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	313, 334
BsoBI	CYCGRG	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	303
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	2 cut(s)	313, 334
BspLI	GGNNCC	2 cut(s)	265, 312
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	383, 452, 541
BssECI	CCNNGG	3 cut(s)	276, 517, 568
BssT1I	CCWWGG	2 cut(s)	276, 568
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	621, 648
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	336, 409
BstF5I	GGATG	3 cut(s)	138, 366, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 580
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	516
BstSNI	TACGTA	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	398, 552, 570, 718
BstV2I	GAAGAC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	313, 334
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	138, 366, 564
Cac8I	GCNNGC	2 cut(s)	336, 409
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	4 cut(s)	264, 304, 433, 577
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviJI	RGCY	9 cut(s)	55, 281, 313, 334, 411, 497, 506, 574, 692
CviKI_1	RGCY	9 cut(s)	55, 281, 313, 334, 411, 497, 506, 574, 692
CviQI	GTAC	4 cut(s)	264, 304, 433, 577
Eam1104I	CTCTTC	2 cut(s)	621, 648
EarI	CTCTTC	2 cut(s)	621, 648
EciI	GGCGGA	1 cut(s)	638
Eco105I	TACGTA	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	276, 568
Eco57I	CTGAAG	2 cut(s)	132, 672
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	276, 568
ErhI	CCWWGG	2 cut(s)	276, 568
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	412, 541, 584, 707
FokI	GGATG	3 cut(s)	145, 353, 551
Fsp4HI	GCNGC	4 cut(s)	412, 541, 584, 707
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	4 cut(s)	412, 541, 584, 707
HaeIII	GGCC	2 cut(s)	313, 334
HgaI	GACGC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	629
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	148, 613, 716
Hpy188I	TCNGA	1 cut(s)	642
Hpy188III	TCNNGA	2 cut(s)	206, 240
Hpy8I	GTNNAC	3 cut(s)	148, 613, 716
HpyAV	CCTTC	4 cut(s)	130, 239, 347, 379
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	3 cut(s)	16, 144, 615
HpyCH4V	TGCA	5 cut(s)	338, 407, 414, 442, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 580
HpySE526I	ACGT	3 cut(s)	16, 144, 615
KpnI	GGTACC	1 cut(s)	267
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	4 cut(s)	398, 552, 570, 718
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	3 cut(s)	16, 144, 615
MaeIII	GTNAC	3 cut(s)	12, 23, 460
MboII	GAAGA	3 cut(s)	547, 638, 665
MluCI	AATT	3 cut(s)	235, 325, 486
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	38, 74, 150, 211, 236, 373
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	2 cut(s)	503, 580
NlaIV	GGNNCC	2 cut(s)	265, 312
NmuCI	GTSAC	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	648
PkrI	GCNGC	4 cut(s)	413, 542, 585, 708
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Ppu21I	YACGTR	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	265, 312
PspPI	GGNCC	1 cut(s)	311
RsaI	GTAC	4 cut(s)	265, 305, 434, 578
RsaNI	GTAC	4 cut(s)	264, 304, 433, 577
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	412, 541, 584, 707
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	518
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	29, 240
SmoI	CTYRAG	2 cut(s)	29, 240
SnaBI	TACGTA	1 cut(s)	17
Sse9I	AATT	3 cut(s)	235, 325, 486
SsiI	CCGC	1 cut(s)	623
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	2 cut(s)	276, 568
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	3 cut(s)	19, 147, 618
TaqI	TCGA	2 cut(s)	160, 241
TasI	AATT	3 cut(s)	235, 325, 486
TatI	WGTACW	2 cut(s)	303, 576
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	4 cut(s)	411, 540, 583, 706
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	4 cut(s)	149, 547, 621, 666
XapI	RAATTY	2 cut(s)	235, 325
XhoI	CTCGAG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.