Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001038.1

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

111878 .. 113604

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001038.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgaagatctacagaagattcaagccacaccttctcatggttttggcacagatcggctatgcatgtctctacttcattactgatgcatccttcaatcatgggatgaaccctcatgtctttgtaacctatcgacatataattggtggcttagtcatgtttccatttgcctattttcttgaaagaaaagcaaggccaaagttgactctagcattgtttatggagatatttgtgatttcccttcttggggttagcttaacccttaatatgtattttgcaagcctgaagtacacatcttcaagcttcgtcacatcaatagccaataccataccatccctgacttttctgattgcagtcatactcaggatggaggctgtagatgtaaggaatccgcgcggaatagctaaactcttgggaaccttaatatctctggctggggtcatcaccatgacttcgtacaaaggacctgcaatacaaagcttctcgggagcatcacaacacataagaagtaattttgttcacaaaagctggacaaagggttcaatccttgtgattgcaagttgtataacatggtccatatggttcataatgcaggggatcacattgaagaaatatcctgcacaactgtcactaaccacatggatcaattgtatcggtgcagcacaatctgctgtgttcacagttatcatacatcacaaacgggcagcatggagaattacatacaacaatgatttctggtccatcatatatgctggagttgtatgctcaggtataacaatcttcattcaactatggtgtacaaaacaaaaaggacctgtcttcgtgaccatgttcagtcctcttgcaacagcattagtggctattctagcttacttcattctcggcgaaaagctgcacattggcagaatagtgggagcggtcattatcattatcggtctatacctagtcttatggggaaaagatagagatcaaaatcatttcaaatcccaagagcaacctaccgtgattagtgataaccagaaggaacccaagatgcaagtgggatcttcagcagaaagacaggtagtcctccaaatggaccttgaggaaaaagataaaaccgatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

368

Amino Acids

41.3

Weight (kDa)

9.72

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccBSI	CCGCTC	1 cut(s)	914
AccII	CGCG	2 cut(s)	391, 393
AciI	CCGC	3 cut(s)	389, 393, 914
AclWI	GGATC	3 cut(s)	602, 647, 1048
AcuI	CTGAAG	2 cut(s)	302, 1029
AfaI	GTAC	3 cut(s)	287, 455, 796
AfiI	CCNNNNNNNGG	4 cut(s)	37, 243, 244, 1072
AgsI	TTSAA	8 cut(s)	22, 94, 179, 297, 540, 604, 785, 979
AhdI	GACNNNNNGTC	1 cut(s)	1061
AloI	GAACNNNNNNTCC	2 cut(s)	520, 552
AluBI	AGCT	7 cut(s)	252, 300, 401, 477, 525, 866, 889
AluI	AGCT	7 cut(s)	252, 300, 401, 477, 525, 866, 889
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	602, 647, 1048
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	656, 701, 889
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	5 cut(s)	461, 570, 735, 809, 1075
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	5 cut(s)	461, 570, 735, 809, 1075
BbsI	GAAGAC	1 cut(s)	808
BbvI	GCAGC	3 cut(s)	668, 713, 876
BccI	CCATC	4 cut(s)	337, 358, 746, 1094
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	3 cut(s)	206, 863, 941
BfmI	CTRYAG	2 cut(s)	10, 372
BfuAI	ACCTGC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	657, 702, 890
BlsI	GCNGC	3 cut(s)	658, 703, 891
Bme18I	GGWCC	5 cut(s)	461, 570, 735, 809, 1075
BmeRI	GACNNNNNGTC	1 cut(s)	1061
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	5 cut(s)	461, 570, 735, 809, 1075
BmiI	GGNNCC	2 cut(s)	415, 1023
BmsI	GCATC	4 cut(s)	73, 95, 497, 1020
BpiI	GAAGAC	1 cut(s)	808
BpmI	CTGGAG	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	763
BpuEI	CTTGAG	1 cut(s)	1100
BsaBI	GATNNNNATC	2 cut(s)	963, 969
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 243, 244, 1072
Bse8I	GATNNNNATC	2 cut(s)	963, 969
BseGI	GGATG	4 cut(s)	86, 108, 329, 369
BseJI	GATNNNNATC	2 cut(s)	963, 969
BseLI	CCNNNNNNNGG	4 cut(s)	37, 243, 244, 1072
BseMII	CTCAG	2 cut(s)	373, 777
BseXI	GCAGC	3 cut(s)	668, 713, 876
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	3 cut(s)	600, 675, 875
Bsh1236I	CGCG	2 cut(s)	391, 393
BshFI	GGCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	481
BslI	CCNNNNNNNGG	4 cut(s)	37, 243, 244, 1072
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	481
Bsp1407I	TGTACA	1 cut(s)	794
Bsp143I	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
BspACI	CCGC	3 cut(s)	389, 393, 914
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	372, 776
BspFNI	CGCG	2 cut(s)	391, 393
BspLI	GGNNCC	2 cut(s)	415, 1023
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	3 cut(s)	602, 647, 1048
BsrBI	CCGCTC	1 cut(s)	914
BsrGI	TGTACA	1 cut(s)	794
BssMI	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
Bst4CI	ACNGT	3 cut(s)	624, 679, 1000
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	148, 359, 763
BstF5I	GGATG	4 cut(s)	86, 108, 329, 369
BstFNI	CGCG	2 cut(s)	391, 393
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	6 cut(s)	9, 54, 597, 642, 967, 1043
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
BstMWI	GCNNNNNNNGC	3 cut(s)	665, 854, 863
BstNSI	RCATGY	1 cut(s)	66
BstSFI	CTRYAG	2 cut(s)	10, 372
BstUI	CGCG	2 cut(s)	391, 393
BstV1I	GCAGC	3 cut(s)	668, 713, 876
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	2 cut(s)	6, 1040
BstYI	RGATCY	2 cut(s)	6, 1040
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	86, 108, 329, 369
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	5 cut(s)	461, 570, 735, 809, 1075
Csp6I	GTAC	3 cut(s)	286, 454, 795
CviQI	GTAC	3 cut(s)	286, 454, 795
DdeI	CTNAG	3 cut(s)	148, 359, 763
DpnI	GATC	6 cut(s)	8, 53, 596, 641, 966, 1042
DpnII	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
DriI	GACNNNNNGTC	1 cut(s)	1061
Eam1105I	GACNNNNNGTC	1 cut(s)	1061
Eco47I	GGWCC	5 cut(s)	461, 570, 735, 809, 1075
Eco57I	CTGAAG	2 cut(s)	302, 1029
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	2 cut(s)	461, 809
EcoT22I	ATGCAT	2 cut(s)	64, 88
FauNDI	CATATG	1 cut(s)	575
Fnu4HI	GCNGC	3 cut(s)	657, 702, 890
FokI	GGATG	4 cut(s)	73, 115, 316, 376
Fsp4HI	GCNGC	3 cut(s)	657, 702, 890
FspBI	CTAG	3 cut(s)	206, 863, 941
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	3 cut(s)	657, 702, 890
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	393
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	2 cut(s)	298, 475
HinfI	GANTC	3 cut(s)	18, 202, 385
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	5 cut(s)	201, 288, 517, 675, 795
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	4 cut(s)	176, 361, 483, 820
Hpy8I	GTNNAC	5 cut(s)	201, 288, 517, 675, 795
HpyAV	CCTTC	4 cut(s)	41, 100, 248, 1012
HpyCH4III	ACNGT	3 cut(s)	624, 679, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	665, 854, 863
HpyF3I	CTNAG	3 cut(s)	148, 359, 763
HspAI	GCGC	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
LmnI	GCTCC	2 cut(s)	485, 911
Lsp1109I	GCAGC	3 cut(s)	668, 713, 876
LweI	GCATC	4 cut(s)	73, 95, 497, 1020
MaeI	CTAG	3 cut(s)	206, 863, 941
MaeIII	GTNAC	4 cut(s)	121, 304, 624, 820
MalI	GATC	6 cut(s)	8, 53, 596, 641, 966, 1042
MbiI	CCGCTC	1 cut(s)	914
MboI	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
MboII	GAAGA	7 cut(s)	16, 27, 285, 616, 769, 808, 1035
MfeI	CAATTG	1 cut(s)	643
MflI	RGATCY	2 cut(s)	6, 1040
MluCI	AATT	4 cut(s)	138, 508, 643, 711
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	5 cut(s)	120, 361, 846, 1075, 1076
Mph1103I	ATGCAT	2 cut(s)	64, 88
MseI	TTAA	3 cut(s)	254, 261, 419
MslI	CAYNNNNRTG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	643
MvnI	CGCG	2 cut(s)	391, 393
MwoI	GCNNNNNNNGC	3 cut(s)	665, 854, 863
NdeI	CATATG	1 cut(s)	575
NdeII	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
NlaIV	GGNNCC	2 cut(s)	415, 1023
NmeAIII	GCCGAG	1 cut(s)	858
NmuCI	GTSAC	3 cut(s)	304, 624, 820
NsiI	ATGCAT	2 cut(s)	64, 88
NspI	RCATGY	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	18, 385
PkrI	GCNGC	3 cut(s)	658, 703, 891
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	2 cut(s)	461, 809
Psp5II	RGGWCCY	2 cut(s)	461, 809
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	415, 1023
PspPI	GGNCC	5 cut(s)	461, 570, 735, 809, 1075
PspPPI	RGGWCCY	2 cut(s)	461, 809
PsuI	RGATCY	2 cut(s)	6, 1040
RsaI	GTAC	3 cut(s)	287, 455, 796
RsaNI	GTAC	3 cut(s)	286, 454, 795
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	254, 261, 419
SatI	GCNGC	3 cut(s)	657, 702, 890
Sau3AI	GATC	6 cut(s)	6, 51, 594, 639, 964, 1040
Sau96I	GGNCC	5 cut(s)	461, 570, 735, 809, 1075
SchI	GAGTC	1 cut(s)	196
SfaNI	GCATC	4 cut(s)	73, 95, 497, 1020
SfcI	CTRYAG	2 cut(s)	10, 372
SinI	GGWCC	5 cut(s)	461, 570, 735, 809, 1075
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
Sse9I	AATT	4 cut(s)	138, 508, 643, 711
SsiI	CCGC	3 cut(s)	389, 393, 914
SspMI	CTAG	3 cut(s)	206, 863, 941
TaaI	ACNGT	3 cut(s)	624, 679, 1000
TaqI	TCGA	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	4 cut(s)	138, 508, 643, 711
TatI	WGTACW	2 cut(s)	285, 794
TfiI	GAWTC	2 cut(s)	18, 385
Tru1I	TTAA	3 cut(s)	254, 261, 419
Tru9I	TTAA	3 cut(s)	254, 261, 419
TseFI	GTSAC	3 cut(s)	304, 624, 820
TseI	GCWGC	3 cut(s)	656, 701, 889
Tsp45I	GTSAC	3 cut(s)	304, 624, 820
TspDTI	ATGAA	6 cut(s)	17, 64, 119, 571, 769, 862
VpaK11BI	GGWCC	5 cut(s)	461, 570, 735, 809, 1075
XceI	RCATGY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1033
XspI	CTAG	3 cut(s)	206, 863, 941
Zsp2I	ATGCAT	2 cut(s)	64, 88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.