Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

2588970 .. 2592139

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCACAGGTGGCATGTAATGATCTTAGGGGAATTTACAAGAAGTTCAAGCCACACCTCCTCATGGTTTTAGCTCAGATGGGCTATACATTTCTGTATTTTATCACAGAAGCTTCCTTCAATCATGGGATGAACCCTCATGTCTACATAACTTATCGACATATTGTGGGCGGTGTAGTGATGTTCCCTTTTGCCTATGTTCTTGAAAGAAAAGACAGACCAAAGCTCACATTAGCTCTTTTCTTGGAACTTTTTGTTCTTTCGCTTCTGGGGGTGGGTTTGACTTTAAACATGTACTTTGCAAGCTTAAGATATACCTCTCCTACATTCCTTGCATCAATAATCAACACCATAGCTTCCGTAACTTTTGTAATTGCGATTGTACTCAGGTTGGAGGTTCTTAATCTTCGAAATCCTCGTGGGTTAGCGAAAGTTTTGGGAACCCTCGTCTCCTTAGCTGGTGTAATGACCATGACATTGTACAAGGGGCCTATTGTGAGAAATTTATGGCATCCATTAATCCATGTCGAAGGAAAATTCTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTTACTGTTGCAAGCTGCATATCATGGTCTATCTGGTACATTATGCAGGCAATTACATTGAAAAGATATCCTGCACAACTGTCACTGACTACATGGATGAGCTTTATAGGGGCAGCACAATCAGCTGTCTTCACAGTGTGTATAGAACATAGACGAGCTGCTTGGACAATTGGATTCAACATCGACCTCTGGTCCATATTATATGCTGGAGTAGTGTGCTCTGGTCTTATAATCTTCATTCAACTATGGTGCACAGAAGAGAAGGGGCCAGTTTTCGTGACCATGTTTAATCCCGTTTCAACAATATTGGTGGCTGTTCTAGCATACTTCGTCCTCGGTGAAAGACTTTATACCGGCAGCATACTAGGGGCATTTATTGTCATCCTTGGCCTGTACTTGCTGTTGTGGGGAAAAGAAGGAGATGAAGTATACATCAAGTCAGAAGAGTCCTCTTATCAAACAACATATGAAGAGCACAAGGATAATAACATACAGAAAATCACTTCAGCTAAGAAGGATGTGCTACATGGTGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

371

Amino Acids

41.74

Weight (kDa)

9.03

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	803
AccI	GTMKAC	2 cut(s)	144, 1002
AciI	CCGC	1 cut(s)	171
AcsI	RAATTY	3 cut(s)	33, 502, 536
AcuI	CTGAAG	1 cut(s)	1062
AdeI	CACNNNGTG	1 cut(s)	711
AfaI	GTAC	5 cut(s)	296, 384, 482, 611, 968
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflII	CTTAAG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	9 cut(s)	49, 121, 206, 562, 570, 634, 751, 815, 873
AhdI	GACNNNNNGTC	1 cut(s)	763
Alw21I	GWGCWC	3 cut(s)	794, 827, 1050
Alw26I	GTCTC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	823
AoxI	GGCC	3 cut(s)	488, 839, 961
ApaLI	GTGCAC	1 cut(s)	823
ApeKI	GCWGC	4 cut(s)	588, 686, 731, 930
ApoI	RAATTY	3 cut(s)	33, 502, 536
AseI	ATTAAT	1 cut(s)	518
AspS9I	GGNCC	3 cut(s)	488, 765, 839
AsuHPI	GGTGA	1 cut(s)	923
AsuII	TTCGAA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	827
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	3 cut(s)	794, 827, 1050
BbvI	GCAGC	4 cut(s)	575, 698, 718, 942
BccI	CCATC	2 cut(s)	73, 551
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	2 cut(s)	893, 938
BfrI	CTTAAG	1 cut(s)	307
BisI	GCNGC	4 cut(s)	589, 687, 732, 931
BlsI	GCNGC	4 cut(s)	590, 688, 733, 932
Bme18I	GGWCC	1 cut(s)	765
BmeRI	GACNNNNNGTC	1 cut(s)	763
BmgT120I	GGNCC	3 cut(s)	488, 765, 839
BmiI	GGNNCC	3 cut(s)	442, 489, 840
BmsI	GCATC	2 cut(s)	344, 520
BpiI	GAAGAC	1 cut(s)	694
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	907, 958
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	2 cut(s)	560, 842
BseDI	CCNNGG	2 cut(s)	907, 958
BseGI	GGATG	6 cut(s)	135, 511, 543, 675, 954, 1096
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	89, 400
BseNI	ACTGG	2 cut(s)	560, 842
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	4 cut(s)	575, 698, 718, 942
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	490, 841, 963
BsiHKAI	GWGCWC	3 cut(s)	794, 827, 1050
BsiSI	CCGG	1 cut(s)	927
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	454
BsmBI	CGTCTC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	490, 841, 963
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	3 cut(s)	794, 827, 1050
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	3 cut(s)	490, 841, 963
BspCNI	CTCAG	2 cut(s)	88, 399
BspLI	GGNNCC	3 cut(s)	442, 489, 840
BspQI	GCTCTTC	1 cut(s)	1038
BspT104I	TTCGAA	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	926
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	560, 842
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	2 cut(s)	907, 958
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	1003
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	958
Bst1107I	GTATAC	1 cut(s)	1003
Bst2BI	CACGAG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	580, 654, 709
Bst6I	CTCTTC	3 cut(s)	825, 1011, 1038
BstAFI	CTTAAG	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	304, 586, 621
BstDEI	CTNAG	5 cut(s)	26, 75, 386, 454, 1083
BstF5I	GGATG	6 cut(s)	135, 511, 543, 675, 954, 1096
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 695, 893
BstNSI	RCATGY	2 cut(s)	18, 295
BstSLI	GKGCMC	1 cut(s)	827
BstV1I	GCAGC	4 cut(s)	575, 698, 718, 942
BstV2I	GAAGAC	1 cut(s)	694
BstZ17I	GTATAC	1 cut(s)	1003
BsuRI	GGCC	3 cut(s)	490, 841, 963
BtsCI	GGATG	6 cut(s)	135, 511, 543, 675, 954, 1096
BtsIMutI	CAGTG	2 cut(s)	656, 714
Cac8I	GCNNGC	3 cut(s)	304, 586, 621
Cfr10I	RCCGGY	1 cut(s)	926
Cfr13I	GGNCC	3 cut(s)	488, 765, 839
Csp6I	GTAC	5 cut(s)	295, 383, 481, 610, 967
CspCI	CAANNNNNGTGG	2 cut(s)	864, 899
CviQI	GTAC	5 cut(s)	295, 383, 481, 610, 967
DdeI	CTNAG	5 cut(s)	26, 75, 386, 454, 1083
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraI	TTTAAA	1 cut(s)	288
DraIII	CACNNNGTG	1 cut(s)	711
DriI	GACNNNNNGTC	1 cut(s)	763
Eam1104I	CTCTTC	3 cut(s)	825, 1011, 1038
Eam1105I	GACNNNNNGTC	1 cut(s)	763
EarI	CTCTTC	3 cut(s)	825, 1011, 1038
Eco130I	CCWWGG	1 cut(s)	958
Eco32I	GATATC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	1062
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	958
Esp3I	CGTCTC	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	1039
FblI	GTMKAC	2 cut(s)	144, 1002
Fnu4HI	GCNGC	4 cut(s)	589, 687, 732, 931
FokI	GGATG	6 cut(s)	142, 498, 530, 682, 941, 1103
Fsp4HI	GCNGC	4 cut(s)	589, 687, 732, 931
FspBI	CTAG	2 cut(s)	893, 938
GluI	GCNGC	4 cut(s)	589, 687, 732, 931
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	490, 841, 963
HapII	CCGG	1 cut(s)	927
HindIII	AAGCTT	2 cut(s)	111, 304
HinfI	GANTC	2 cut(s)	747, 1019
HpaII	CCGG	1 cut(s)	927
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	4 cut(s)	145, 825, 1003, 1106
Hpy188I	TCNGA	2 cut(s)	78, 1015
Hpy188III	TCNNGA	2 cut(s)	203, 850
Hpy8I	GTNNAC	4 cut(s)	145, 825, 1003, 1106
HpyAV	CCTTC	6 cut(s)	127, 524, 556, 829, 983, 1081
HpyCH4III	ACNGT	3 cut(s)	580, 654, 709
HpyCH4V	TGCA	7 cut(s)	302, 335, 584, 591, 619, 647, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 695, 893
HpyF3I	CTNAG	5 cut(s)	26, 75, 386, 454, 1083
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	1038
Lsp1109I	GCAGC	4 cut(s)	575, 698, 718, 942
LweI	GCATC	2 cut(s)	344, 520
MaeI	CTAG	2 cut(s)	893, 938
MaeIII	GTNAC	3 cut(s)	361, 654, 850
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	6 cut(s)	398, 694, 799, 842, 1028, 1055
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	3 cut(s)	794, 827, 1050
MluCI	AATT	7 cut(s)	33, 372, 502, 536, 570, 624, 741
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	1 cut(s)	372
MseI	TTAA	5 cut(s)	287, 308, 402, 518, 861
MspA1I	CMGCKG	1 cut(s)	698
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	1 cut(s)	927
MunI	CAATTG	1 cut(s)	741
MwoI	GCNNNNNNNGC	3 cut(s)	11, 695, 893
NdeI	CATATG	1 cut(s)	1039
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	3 cut(s)	442, 489, 840
NmuCI	GTSAC	2 cut(s)	654, 850
NspI	RCATGY	2 cut(s)	18, 295
NspV	TTCGAA	1 cut(s)	409
PciI	ACATGT	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	1038
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	590, 688, 733, 932
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
PscI	ACATGT	1 cut(s)	291
PshBI	ATTAAT	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	803
PspN4I	GGNNCC	3 cut(s)	442, 489, 840
PspPI	GGNCC	3 cut(s)	488, 765, 839
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	5 cut(s)	296, 384, 482, 611, 968
RsaNI	GTAC	5 cut(s)	295, 383, 481, 610, 967
SapI	GCTCTTC	1 cut(s)	1038
SaqAI	TTAA	5 cut(s)	287, 308, 402, 518, 861
SatI	GCNGC	4 cut(s)	589, 687, 732, 931
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	3 cut(s)	488, 765, 839
SchI	GAGTC	1 cut(s)	1028
SduI	GDGCHC	3 cut(s)	794, 827, 1050
SfaNI	GCATC	2 cut(s)	344, 520
SfuI	TTCGAA	1 cut(s)	409
SinI	GGWCC	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	7 cut(s)	33, 372, 502, 536, 570, 624, 741
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	2 cut(s)	893, 938
StyI	CCWWGG	1 cut(s)	958
TaaI	ACNGT	3 cut(s)	580, 654, 709
TaqI	TCGA	4 cut(s)	157, 409, 528, 756
TasI	AATT	7 cut(s)	33, 372, 502, 536, 570, 624, 741
TatI	WGTACW	4 cut(s)	294, 382, 480, 966
TfiI	GAWTC	1 cut(s)	747
Tru1I	TTAA	5 cut(s)	287, 308, 402, 518, 861
Tru9I	TTAA	5 cut(s)	287, 308, 402, 518, 861
TscAI	CASTG	2 cut(s)	663, 714
TseFI	GTSAC	2 cut(s)	654, 850
TseI	GCWGC	4 cut(s)	588, 686, 731, 930
Tsp45I	GTSAC	2 cut(s)	654, 850
TspDTI	ATGAA	4 cut(s)	146, 799, 1011, 1056
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	663, 714
Vha464I	CTTAAG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	765
VspI	ATTAAT	1 cut(s)	518
XapI	RAATTY	3 cut(s)	33, 502, 536
XceI	RCATGY	2 cut(s)	18, 295
XmiI	GTMKAC	2 cut(s)	144, 1002
XspI	CTAG	2 cut(s)	893, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.