Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Forward (+)

8783084 .. 8785439

Gene Structure 2356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCACAACAGCCAAGTTCCCATGTGGGAACTTACAAGAGGTTCAAGCCACACCTCCTCATGGTTTTATCTCAAGTGGCCTACGCATTTCTCTATTTCATTACAGAAGCTTCCTTCAATCATGGGATGAACCCTCATGTCTACATAACTTATCGACATATCGTGTCTGGCATAATCATGCTCCCTTTTGCCTATTTTCTTGAAAGAAAAGACAGACCAAAGCTCACATTTGCTCTTTTCTTGGAACTTTTTGTTATTTCTTTTCTGGGGATAGGTTTGACTTTAAACATGTACTTTGCAAGCTTAAGATACACCTCTCCAACCTTCCTTGCATCAATGATCAACACCATAGCTTCCCTCACTTTTGTGATTGCAGTTTCACTCAAGTTGGAGGTTCTTGATCTTCGAAATCCTCATGGATTAGCAAAAGTTTTGGGCACCGTAGTCTCCTTAGCCGGTGTAATGACCATGACTTTGTACAAAGGACCTATTATGAGAAACTTGTGGAGTCCACTAATCCATATTCAAGGAAAAACTTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTAACTGTTGCTAGCTGCATAACATGGTCTTTATGGTACATTATGCAGGCAGTCACATTGAAAAGATATCCTGCACAACTATCAATGATAACATGGATGAGCTTCCTAGGGGCAGCACAGTCAGCTGTCTTTGCAGTTTGTATAGAACATAAACGAGCTGCTTGGACAGTTGGATTCAACATTGACCTCTGGTGCATTTTGTATTCTGGAGGGGTGTGCTCTGGCCTAATACTCTTTATTCAACTATGGTGCACAGTAGAGAAAGGACCTGTCTTTGTGACCATGTTTGATCCCGTCTCAACAATATTGGTGGCAATTCTAGCATACTTTGTGCTGGGTGAAAGACTCTATATTGGCAGCATAGTAGGCGCAGCTATCGTCATTGTTGGCCTATACTTGCTGTTGTGGGGAAAAGAAGGTGATGAAGTTTACACCACTAAGTCTGAAGAGTCTGATCAGACAAATGAAGAGGAGAAAGATAACAATATGCCGACGATTTCTTCAGTCAAGAAGGATGCATTACATGATCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

368

Amino Acids

41.28

Weight (kDa)

8.46

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 157	1e-10	EamA-like transporter family
EamA	PF00892	187 - 325	3.3e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	854
AcuI	CTGAAG	2 cut(s)	1035, 1056
AfaI	GTAC	3 cut(s)	293, 479, 608
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	9 cut(s)	46, 118, 203, 527, 559, 567, 631, 748, 812
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	9 cut(s)	110, 223, 303, 353, 585, 672, 695, 728, 944
AluI	AGCT	9 cut(s)	110, 223, 303, 353, 585, 672, 695, 728, 944
Alw21I	GWGCWC	2 cut(s)	791, 824
Alw26I	GTCTC	2 cut(s)	451, 871
Alw44I	GTGCAC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	854
AoxI	GGCC	3 cut(s)	78, 793, 958
ApaLI	GTGCAC	1 cut(s)	820
ApeKI	GCWGC	5 cut(s)	585, 683, 728, 927, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
Asp700I	GAANNNNTTC	1 cut(s)	535
AspA2I	CCTAGG	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	2 cut(s)	485, 836
AsuHPI	GGTGA	2 cut(s)	920, 1001
AsuII	TTCGAA	1 cut(s)	406
AsuNHI	GCTAGC	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	485, 836
AvrII	CCTAGG	1 cut(s)	676
BaeGI	GKGCMC	2 cut(s)	440, 824
BanI	GGYRCC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	791, 824
BbvI	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BccI	CCATC	1 cut(s)	548
BclI	TGATCA	3 cut(s)	339, 1024, 1096
BcoDI	GTCTC	2 cut(s)	451, 871
BfaI	CTAG	3 cut(s)	582, 677, 890
BfrI	CTTAAG	1 cut(s)	304
BisI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
BlnI	CCTAGG	1 cut(s)	676
BlsI	GCNGC	5 cut(s)	587, 685, 730, 929, 943
Bme18I	GGWCC	2 cut(s)	485, 836
BmgT120I	GGNCC	2 cut(s)	485, 836
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	2 cut(s)	341, 1075
BmtI	GCTAGC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	798
Bpu10I	CCTNAGC	1 cut(s)	451
Bpu14I	TTCGAA	1 cut(s)	406
BpuEI	CTTGAG	2 cut(s)	57, 368
BsaJI	CCNNGG	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	4 cut(s)	132, 540, 672, 1090
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	2 cut(s)	47, 1055
BseSI	GKGCMC	2 cut(s)	440, 824
BseXI	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BseYI	CCCAGC	1 cut(s)	904
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	80, 795, 960
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	2 cut(s)	791, 824
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	451, 871
BsmBI	CGTCTC	1 cut(s)	871
BsnI	GGCC	3 cut(s)	80, 795, 960
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	440, 791, 824
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	339, 400, 859, 1024, 1096
BspANI	GGCC	3 cut(s)	80, 795, 960
BspLI	GGNNCC	1 cut(s)	439
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	5 cut(s)	339, 400, 859, 1024, 1096
BssT1I	CCWWGG	1 cut(s)	676
Bst4CI	ACNGT	5 cut(s)	442, 577, 690, 739, 826
Bst6I	CTCTTC	2 cut(s)	1011, 1032
BstAFI	CTTAAG	1 cut(s)	304
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	301, 583, 618
BstDEI	CTNAG	2 cut(s)	451, 1008
BstF5I	GGATG	4 cut(s)	132, 540, 672, 1090
BstHHI	GCGC	1 cut(s)	941
BstKTI	GATC	5 cut(s)	342, 403, 862, 1027, 1099
BstMAI	GTCTC	2 cut(s)	451, 871
BstMBI	GATC	5 cut(s)	339, 400, 859, 1024, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	692, 701, 890, 936
BstNSI	RCATGY	1 cut(s)	292
BstSLI	GKGCMC	2 cut(s)	440, 824
BstV1I	GCAGC	5 cut(s)	572, 695, 715, 939, 953
BsuRI	GGCC	3 cut(s)	80, 795, 960
BtsCI	GGATG	4 cut(s)	132, 540, 672, 1090
Cac8I	GCNNGC	3 cut(s)	301, 583, 618
CfoI	GCGC	1 cut(s)	941
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	485, 836
Csp6I	GTAC	3 cut(s)	292, 478, 607
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	3 cut(s)	292, 478, 607
DdeI	CTNAG	2 cut(s)	451, 1008
DpnI	GATC	5 cut(s)	341, 402, 861, 1026, 1098
DpnII	GATC	5 cut(s)	339, 400, 859, 1024, 1096
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	1011, 1032
EarI	CTCTTC	2 cut(s)	1011, 1032
Eco130I	CCWWGG	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	485, 836
Eco57I	CTGAAG	2 cut(s)	1035, 1056
EcoO109I	RGGNCCY	2 cut(s)	485, 836
EcoRV	GATATC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	1090
ErhI	CCWWGG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	871
FbaI	TGATCA	3 cut(s)	339, 1024, 1096
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
FokI	GGATG	4 cut(s)	139, 527, 679, 1097
Fsp4HI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
FspBI	CTAG	3 cut(s)	582, 677, 890
GlaI	GCGC	1 cut(s)	940
GluI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
GsaI	CCCAGC	1 cut(s)	908
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	3 cut(s)	80, 795, 960
HapII	CCGG	1 cut(s)	456
HhaI	GCGC	1 cut(s)	941
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HindIII	AAGCTT	2 cut(s)	108, 301
HinfI	GANTC	4 cut(s)	508, 744, 915, 1019
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	920, 1001
Hpy166II	GTNNAC	4 cut(s)	142, 512, 822, 1000
Hpy188I	TCNGA	3 cut(s)	1015, 1024, 1029
Hpy188III	TCNNGA	4 cut(s)	200, 398, 777, 1078
Hpy8I	GTNNAC	4 cut(s)	142, 512, 822, 1000
Hpy99I	CGWCG	1 cut(s)	1066
HpyAV	CCTTC	5 cut(s)	124, 334, 553, 980, 1075
HpyCH4III	ACNGT	5 cut(s)	442, 577, 690, 739, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	692, 701, 890, 936
HpyF3I	CTNAG	2 cut(s)	451, 1008
HspAI	GCGC	1 cut(s)	939
Ksp22I	TGATCA	3 cut(s)	339, 1024, 1096
Kzo9I	GATC	5 cut(s)	339, 400, 859, 1024, 1096
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	5 cut(s)	572, 695, 715, 939, 953
LweI	GCATC	2 cut(s)	341, 1075
MaeI	CTAG	3 cut(s)	582, 677, 890
MaeIII	GTNAC	2 cut(s)	622, 847
MalI	GATC	5 cut(s)	341, 402, 861, 1026, 1098
MboI	GATC	5 cut(s)	339, 400, 859, 1024, 1096
MboII	GAAGA	4 cut(s)	395, 1028, 1049, 1062
MhlI	GDGCHC	3 cut(s)	440, 791, 824
MluCI	AATT	2 cut(s)	567, 885
MlyI	GAGTC	3 cut(s)	517, 909, 1028
MmeI	TCCRAC	3 cut(s)	344, 369, 721
Mph1103I	ATGCAT	1 cut(s)	1090
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	2 cut(s)	284, 305
MslI	CAYNNNNRTG	2 cut(s)	176, 365
MspA1I	CMGCKG	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	692, 701, 890, 936
NdeII	GATC	5 cut(s)	339, 400, 859, 1024, 1096
NheI	GCTAGC	1 cut(s)	581
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	622, 847
NsiI	ATGCAT	1 cut(s)	1090
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	365
PciI	ACATGT	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	744
PkrI	GCNGC	5 cut(s)	587, 685, 730, 929, 943
PleI	GAGTC	3 cut(s)	516, 909, 1027
PpsI	GAGTC	3 cut(s)	516, 909, 1027
PpuMI	RGGWCCY	2 cut(s)	485, 836
PscI	ACATGT	1 cut(s)	288
Psp5II	RGGWCCY	2 cut(s)	485, 836
PspFI	CCCAGC	1 cut(s)	904
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	485, 836
PspPPI	RGGWCCY	2 cut(s)	485, 836
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	3 cut(s)	293, 479, 608
RsaNI	GTAC	3 cut(s)	292, 478, 607
RseI	CAYNNNNRTG	2 cut(s)	176, 365
SaqAI	TTAA	2 cut(s)	284, 305
SatI	GCNGC	5 cut(s)	586, 684, 729, 928, 942
Sau3AI	GATC	5 cut(s)	339, 400, 859, 1024, 1096
Sau96I	GGNCC	2 cut(s)	485, 836
SchI	GAGTC	3 cut(s)	517, 909, 1028
SduI	GDGCHC	3 cut(s)	440, 791, 824
SfaNI	GCATC	2 cut(s)	341, 1075
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	2 cut(s)	485, 836
SmiMI	CAYNNNNRTG	2 cut(s)	176, 365
SmlI	CTYRAG	3 cut(s)	72, 304, 383
SmoI	CTYRAG	3 cut(s)	72, 304, 383
Sse9I	AATT	2 cut(s)	567, 885
SspI	AATATT	1 cut(s)	876
SspMI	CTAG	3 cut(s)	582, 677, 890
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	5 cut(s)	442, 577, 690, 739, 826
TaqI	TCGA	2 cut(s)	154, 406
TasI	AATT	2 cut(s)	567, 885
TatI	WGTACW	2 cut(s)	291, 477
TfiI	GAWTC	1 cut(s)	744
Tru1I	TTAA	2 cut(s)	284, 305
Tru9I	TTAA	2 cut(s)	284, 305
TseFI	GTSAC	2 cut(s)	622, 847
TseI	GCWGC	5 cut(s)	585, 683, 728, 927, 941
Tsp45I	GTSAC	2 cut(s)	622, 847
TspDTI	ATGAA	4 cut(s)	88, 143, 1008, 1050
Vha464I	CTTAAG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	820
VpaK11BI	GGWCC	2 cut(s)	485, 836
XceI	RCATGY	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	3 cut(s)	582, 677, 890
Zsp2I	ATGCAT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.