Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002399

Physical Location & Seq

Genomic Coordinates Reverse (-)

28023958 .. 28025969

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1186000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTGCAGTTAATGAGCTGTGGCACCTGTTACAGGATGGGCTTCGCAAGATTCAAGCCGCACATTCTCATGGTTTTGGCACAGATCGGTTATACATTTCTCTACTTGATTACAGCTGCATCCTTCGATCATGGGATGAACCCTCATGTCTTTGTAACCTATCGACATATAGTAGGTGGCTTAGTGATGTTTCCATTTGCCTATTTTCTTGAAAGAAAAGTAAGGCCAAAGTTGACACTAGCAGTGTTTCTGGAGATATTTTTACTTTCTCTGCTAGGGGTTAGCTTAACCCTTAATTTGTATTTTGCGAGCTTGAAGTACACGTCTCCAACCTTTGTCACATCGGTCGCCAACACCATTCCGTCCATAACTTTTATAATTGCAGTCATACTCAGGATGGAGGCTGTAGATGTTAGGAATCCCCGTGGAATAGCTAAAATCTTCGGAACCTTAATATCTTTGGCTGGAGCCATGACCATGACCTTGTACAAAGGACCTGCCGTGCGAAGCTCACCAGGAGCTCCAAAACACATCACAAGTAACTCTGTTCATGAAAACTGGACGAAGGGATCAATCCTCCTCATTGGAAGTTGTATATCATGGTCCGCATGGTTCATAATGCAGGCAATCACACTGAAGAAATATCCTGCACAACTGTCACTAACCACATGGATAAATTGTATTGGGGCAGCACAATCGGCTGTTTTCACAGTAACAATACAACACAAAAGGGTAGCATGGAGTATTAGATACAACAATGACTTCTGGTCCATCATCTATGCTGGAGTTGTATGCTCCGGTATAATGGTCTTCATTCAACTGTGGTGCACAAAACAAAAAGGACCAGTTTTTGTGACCATGTTCAGTCCCCTTGCAACGGTATTGGTGGCAGTTATGGCATACTTCATTCTTGGTGAAAGACTGCACGTTGGCAGAATACTGGGAGCAGTCATTATCACCATCGGTCTCTACATGGTATTATGGGGCAAAGATAGAGATCAAAATGTTATCAGGTCGCAAGAGCAAACTATATTAACTAGTAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

350

Amino Acids

38.96

Weight (kDa)

9.82

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	21 - 157	1.8e-12	EamA-like transporter family
EamA	PF00892	189 - 327	2.1e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21770 FvH4_4g03390 FvH4_4g03390
malus_domestica	MD10G1186000.v1.1 MD13G1212300.v1.1 MD16G1215900.v1.1
prunus_persica	Prupe.1G037200_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1 Prupe.8G225600_v2.0.a1
pyrus_communis	pycom10g16090
rosa_chinensis	RchiOBHm_Chr4g0392371 RchiOBHm_Chr4g0392391 RchiOBHm_Chr6g0288411 RchiOBHm_Chr6g0288431
rosa_laevigata	RLG00000009815 RLG00000009816 RLG00000012404
rosa_multiflora	Rmu_sc0001038.1_g000027 Rmu_sc0001800.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337550 Rroxscaffold_5G00337570 Rroxscaffold_7G00180070 Rroxscaffold_7G00180080
rosa_rugosa	Rorug06G0196300 Rorug06G0196400
rosa_samantha	Rh4AG042200 Rh4AG042300 Rh4BG037100 Rh4BG037200 Rh4CG045000 Rh4CG045100 Rh4DG039200 Rh4DG039600 Rh6AG307900 Rh6BG313300 Rh6CG321100 Rh6DG306500
rosa_wichuraiana	Rw4G003290 Rw4G003300 Rw6G026590 Rw6G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	59, 606
AclWI	GGATC	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	2 cut(s)	320, 488
AfiI	CCNNNNNNNGG	2 cut(s)	33, 877
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	55, 212, 316, 818
AhdI	GACNNNNNGTC	1 cut(s)	766
AhlI	ACTAGT	1 cut(s)	1037
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	7 cut(s)	18, 116, 285, 312, 434, 510, 521
AluI	AGCT	7 cut(s)	18, 116, 285, 312, 434, 510, 521
Alw21I	GWGCWC	2 cut(s)	523, 830
Alw26I	GTCTC	2 cut(s)	330, 971
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	2 cut(s)	116, 689
AspS9I	GGNCC	4 cut(s)	494, 603, 768, 842
AsuHPI	GGTGA	3 cut(s)	504, 926, 949
AvaII	GGWCC	4 cut(s)	494, 603, 768, 842
BaeGI	GKGCMC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	802
Bbv12I	GWGCWC	2 cut(s)	523, 830
BbvI	GCAGC	2 cut(s)	103, 701
BccI	CCATC	4 cut(s)	31, 391, 779, 968
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	678, 712
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	330, 971
BcuI	ACTAGT	1 cut(s)	1037
BfaI	CTAG	3 cut(s)	239, 275, 1038
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	59, 117, 690
BlsI	GCNGC	3 cut(s)	60, 118, 691
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	4 cut(s)	494, 603, 768, 842
BmeRI	GACNNNNNGTC	1 cut(s)	766
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	4 cut(s)	494, 603, 768, 842
BmiI	GGNNCC	3 cut(s)	25, 448, 469
BmrFI	CCNGG	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	950
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	950
BpiI	GAAGAC	1 cut(s)	802
BpmI	CTGGAG	3 cut(s)	272, 486, 804
BsaBI	GATNNNNATC	1 cut(s)	996
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 877
Bse1I	ACTGG	3 cut(s)	563, 845, 945
Bse8I	GATNNNNATC	1 cut(s)	996
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	4 cut(s)	42, 119, 141, 402
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	2 cut(s)	33, 877
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	3 cut(s)	563, 845, 945
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	103, 701
BsgI	GTGCAG	2 cut(s)	633, 908
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	523, 830
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	2 cut(s)	33, 877
BsmAI	GTCTC	2 cut(s)	330, 971
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	852
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	971
Bsp1286I	GDGCHC	2 cut(s)	523, 830
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	84, 127, 569, 997
BspACI	CCGC	2 cut(s)	59, 606
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	25, 448, 469
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	971
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	563, 845, 945
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	4 cut(s)	84, 127, 569, 997
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	4 cut(s)	657, 712, 822, 880
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	310, 624
BstDEI	CTNAG	2 cut(s)	181, 392
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	4 cut(s)	42, 119, 141, 402
BstKTI	GATC	4 cut(s)	87, 130, 572, 1000
BstMAI	GTCTC	2 cut(s)	330, 971
BstMBI	GATC	4 cut(s)	84, 127, 569, 997
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 896
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	103, 701
BstV2I	GAAGAC	1 cut(s)	802
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	424
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	4 cut(s)	42, 119, 141, 402
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 632
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	310, 624
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	4 cut(s)	494, 603, 768, 842
Csp6I	GTAC	2 cut(s)	319, 487
CviQI	GTAC	2 cut(s)	319, 487
DdeI	CTNAG	2 cut(s)	181, 392
DpnI	GATC	4 cut(s)	86, 129, 571, 999
DpnII	GATC	4 cut(s)	84, 127, 569, 997
DriI	GACNNNNNGTC	1 cut(s)	766
Eam1105I	GACNNNNNGTC	1 cut(s)	766
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	971
Eco47I	GGWCC	4 cut(s)	494, 603, 768, 842
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	330
FaqI	GGGAC	1 cut(s)	852
Fnu4HI	GCNGC	3 cut(s)	59, 117, 690
FokI	GGATG	4 cut(s)	49, 106, 148, 409
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	3 cut(s)	59, 117, 690
FspBI	CTAG	3 cut(s)	239, 275, 1038
GluI	GCNGC	3 cut(s)	59, 117, 690
GsuI	CTGGAG	3 cut(s)	272, 486, 804
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	51, 418
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	3 cut(s)	504, 926, 949
Hpy166II	GTNNAC	3 cut(s)	234, 321, 828
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	4 cut(s)	209, 251, 394, 551
Hpy8I	GTNNAC	3 cut(s)	234, 321, 828
HpyAV	CCTTC	2 cut(s)	133, 559
HpyCH4III	ACNGT	4 cut(s)	657, 712, 822, 880
HpyCH4IV	ACGT	2 cut(s)	323, 927
HpyCH4V	TGCA	8 cut(s)	7, 119, 383, 622, 650, 828, 875, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 896
HpyF3I	CTNAG	2 cut(s)	181, 392
HpySE526I	ACGT	2 cut(s)	323, 927
Kzo9I	GATC	4 cut(s)	84, 127, 569, 997
LmnI	GCTCC	5 cut(s)	467, 518, 526, 800, 944
Lsp1109I	GCAGC	2 cut(s)	103, 701
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	3 cut(s)	239, 275, 1038
MaeII	ACGT	2 cut(s)	323, 927
MaeIII	GTNAC	7 cut(s)	29, 154, 337, 539, 657, 712, 853
MalI	GATC	4 cut(s)	86, 129, 571, 999
MboI	GATC	4 cut(s)	84, 127, 569, 997
MboII	GAAGA	3 cut(s)	433, 649, 802
MhlI	GDGCHC	2 cut(s)	523, 830
MluCI	AATT	3 cut(s)	295, 378, 676
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	153, 394, 587, 590
MseI	TTAA	5 cut(s)	11, 287, 294, 452, 1034
MslI	CAYNNNNRTG	2 cut(s)	68, 476
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	698, 896
NdeII	GATC	4 cut(s)	84, 127, 569, 997
NlaIV	GGNNCC	3 cut(s)	25, 448, 469
NmuCI	GTSAC	3 cut(s)	337, 657, 853
PagI	TCATGA	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	51, 418
PkrI	GCNGC	3 cut(s)	60, 118, 691
PpuMI	RGGWCCY	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	25, 448, 469
PspPI	GGNCC	4 cut(s)	494, 603, 768, 842
PspPPI	RGGWCCY	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	320, 488
RsaNI	GTAC	2 cut(s)	319, 487
RseI	CAYNNNNRTG	2 cut(s)	68, 476
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	11, 287, 294, 452, 1034
SatI	GCNGC	3 cut(s)	59, 117, 690
Sau3AI	GATC	4 cut(s)	84, 127, 569, 997
Sau96I	GGNCC	4 cut(s)	494, 603, 768, 842
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	523, 830
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	4 cut(s)	494, 603, 768, 842
SmiMI	CAYNNNNRTG	2 cut(s)	68, 476
SpeI	ACTAGT	1 cut(s)	1037
Sse9I	AATT	3 cut(s)	295, 378, 676
SsiI	CCGC	2 cut(s)	59, 606
SspMI	CTAG	3 cut(s)	239, 275, 1038
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	4 cut(s)	657, 712, 822, 880
TaiI	ACGT	2 cut(s)	326, 930
TaqI	TCGA	2 cut(s)	126, 163
TaqII	GACCGA	2 cut(s)	334, 953
TasI	AATT	3 cut(s)	295, 378, 676
TatI	WGTACW	2 cut(s)	318, 486
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	51, 418
Tru1I	TTAA	5 cut(s)	11, 287, 294, 452, 1034
Tru9I	TTAA	5 cut(s)	11, 287, 294, 452, 1034
TscAI	CASTG	2 cut(s)	249, 639
TseFI	GTSAC	3 cut(s)	337, 657, 853
TseI	GCWGC	2 cut(s)	116, 689
Tsp45I	GTSAC	3 cut(s)	337, 657, 853
TspDTI	ATGAA	6 cut(s)	152, 539, 567, 604, 802, 895
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	249, 639
VneI	GTGCAC	1 cut(s)	826
VpaK11BI	GGWCC	4 cut(s)	494, 603, 768, 842
XagI	CCTNNNNNAGG	1 cut(s)	31
XspI	CTAG	3 cut(s)	239, 275, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.