Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

5474487 .. 5478370

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTTCTGCTGCCAACATTGCTGCCTTGCACTTCTCTTGTTCGTTCTTCAAAGCTGCTACAGTTGCTTCTAAACAGCATGCTAGTCCTTTTGGTGGCCATGGCTCTGTGTGGTACTTGCTCCGGTGCCGCTGCCGGTGCTGCTTATGAAGTGGGCGGCCCGGATGGTTGGATAATAGGAACTGACTACCACCAGTGGTCCTCCTCGAAAGAGTTTCACGTTGGCGATACTCTTTTGTTTTCTTACAGTCCTTACCACAATGTCATTGAAGTTACCAAGCAAGGTTTCGAATCTTGCGACCCCAACTCTCCCATCGCAGCTTATGATTCCGGCTCAGATAGCATCACACTTGAAAGGCCTGGACACTATTACTTCCTCTGTGGTATTCCTGGCCATTGTAACGTAGGACAGAAGGTCGAGGTTGTGGTCAGCAGCCTTCCTACACCAGCTGACAGTCCAGTCTCCTCTCCGAGCCCAACCCCTTCTGGATTGGCTTCGCCTTCAACTCCGAGCCCGGCACCATCGTCTTCTCCTTCATCAACTCCAAGCCCGACACCGTCTGCATTGTCTACTCCGTTAACTCCAAGCCCAGCACCTTTTGCATTCTCTTCTCCTTCATCAACACCAAGCCAGTCACCTTCTATATTGTCATCTCCTTCAAATCCGAGCCCGGCACCATCTCCTTCAACTCCTCATCCTCAAGAGAGGCCACCACATTCAGAGGCTACGACCACTAATGCTCCAAAGCTTGCCTTGGCTTTGGCTGTCTTCCTTTCTGTGCTAGCTTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

265

Amino Acids

27.19

Weight (kDa)

5.33

Isoelectric Point (pI)

82.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	58 - 137	2.2e-27	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
AccB1I	GGYRCC	3 cut(s)	125, 517, 673
AccI	GTMKAC	1 cut(s)	569
AciI	CCGC	2 cut(s)	129, 156
AcoI	YGGCCR	2 cut(s)	96, 391
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	6 cut(s)	51, 269, 353, 504, 660, 687
AhdI	GACNNNNNGTC	1 cut(s)	413
AjnI	CCWGG	2 cut(s)	358, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	5 cut(s)	55, 320, 449, 748, 785
AluI	AGCT	5 cut(s)	55, 320, 449, 748, 785
Alw26I	GTCTC	1 cut(s)	466
AoxI	GGCC	5 cut(s)	96, 157, 356, 391, 707
ApeKI	GCWGC	7 cut(s)	10, 22, 55, 131, 140, 317, 432
AspS9I	GGNCC	2 cut(s)	158, 198
AsuC2I	CCSGG	3 cut(s)	161, 515, 671
AsuHPI	GGTGA	1 cut(s)	627
AsuII	TTCGAA	1 cut(s)	288
AsuNHI	GCTAGC	1 cut(s)	781
AvaII	GGWCC	1 cut(s)	198
BalI	TGGCCA	2 cut(s)	98, 393
BanI	GGYRCC	3 cut(s)	125, 517, 673
BanII	GRGCYC	3 cut(s)	476, 515, 671
BbsI	GAAGAC	2 cut(s)	519, 760
BbvI	GCAGC	6 cut(s)	9, 42, 118, 127, 329, 444
BccI	CCATC	4 cut(s)	158, 320, 529, 685
BciT130I	CCWGG	2 cut(s)	360, 390
BcnI	CCSGG	3 cut(s)	161, 515, 671
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	3 cut(s)	83, 782, 793
BfmI	CTRYAG	1 cut(s)	59
BisI	GCNGC	9 cut(s)	11, 23, 56, 129, 132, 141, 157, 318, 433
BlsI	GCNGC	9 cut(s)	12, 24, 57, 130, 133, 142, 158, 319, 434
Bme1390I	CCNGG	5 cut(s)	161, 360, 390, 515, 671
Bme18I	GGWCC	1 cut(s)	198
BmeRI	GACNNNNNGTC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	158, 198
BmiI	GGNNCC	3 cut(s)	127, 519, 675
BmrFI	CCNGG	5 cut(s)	161, 360, 390, 515, 671
BmsI	GCATC	1 cut(s)	351
BmtI	GCTAGC	1 cut(s)	785
BpiI	GAAGAC	2 cut(s)	519, 760
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	684
BpuMI	CCSGG	3 cut(s)	161, 515, 671
BsaJI	CCNNGG	2 cut(s)	99, 753
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	193, 458, 631
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	360, 390
BseDI	CCNNGG	2 cut(s)	99, 753
BseGI	GGATG	2 cut(s)	169, 694
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	193, 458, 631
BseRI	GAGGAG	3 cut(s)	193, 454, 681
BseXI	GCAGC	6 cut(s)	9, 42, 118, 127, 329, 444
BseYI	CCCAGC	1 cut(s)	589
BshFI	GGCC	5 cut(s)	98, 159, 358, 393, 709
BshNI	GGYRCC	3 cut(s)	125, 517, 673
BsiSI	CCGG	6 cut(s)	123, 135, 161, 330, 515, 671
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	5 cut(s)	98, 159, 358, 393, 709
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	476, 515, 671
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	129, 156
BspANI	GGCC	5 cut(s)	98, 159, 358, 393, 709
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	3 cut(s)	127, 519, 675
BspOI	GCTAGC	1 cut(s)	785
BspT104I	TTCGAA	1 cut(s)	288
BspT107I	GGYRCC	3 cut(s)	125, 517, 673
BsrDI	GCAATG	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	193, 458, 631
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	99, 753
BssT1I	CCWWGG	2 cut(s)	99, 753
Bst2UI	CCWGG	2 cut(s)	360, 390
Bst4CI	ACNGT	4 cut(s)	63, 248, 455, 558
Bst6I	CTCTTC	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	80, 750, 783
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	169, 694
BstMAI	GTCTC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 19, 64, 137, 140, 339, 599
BstNI	CCWGG	2 cut(s)	360, 390
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	5 cut(s)	159, 358, 388, 513, 669
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	6 cut(s)	9, 42, 118, 127, 329, 444
BstV2I	GAAGAC	2 cut(s)	519, 760
BsuRI	GGCC	5 cut(s)	98, 159, 358, 393, 709
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	169, 694
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	80, 750, 783
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	158, 198
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	79, 100
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	2 cut(s)	96, 391
Eam1104I	CTCTTC	1 cut(s)	613
Eam1105I	GACNNNNNGTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	613
Eco130I	CCWWGG	2 cut(s)	99, 753
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	3 cut(s)	476, 515, 671
Eco47I	GGWCC	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	358, 388
EcoT14I	CCWWGG	2 cut(s)	99, 753
EcoT38I	GRGCYC	3 cut(s)	476, 515, 671
ErhI	CCWWGG	2 cut(s)	99, 753
FaeI	CATG	2 cut(s)	82, 103
FaiI	YATR	5 cut(s)	80, 101, 147, 324, 644
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FatI	CATG	2 cut(s)	78, 99
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	9 cut(s)	11, 23, 56, 129, 132, 141, 157, 318, 433
FokI	GGATG	2 cut(s)	176, 681
FriOI	GRGCYC	3 cut(s)	476, 515, 671
Fsp4HI	GCNGC	9 cut(s)	11, 23, 56, 129, 132, 141, 157, 318, 433
FspBI	CTAG	3 cut(s)	83, 782, 793
GluI	GCNGC	9 cut(s)	11, 23, 56, 129, 132, 141, 157, 318, 433
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	5 cut(s)	98, 159, 358, 393, 709
HapII	CCGG	6 cut(s)	123, 135, 161, 330, 515, 671
Hin1II	CATG	2 cut(s)	82, 103
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	2 cut(s)	290, 326
HpaI	GTTAAC	1 cut(s)	579
HpaII	CCGG	6 cut(s)	123, 135, 161, 330, 515, 671
HphI	GGTGA	1 cut(s)	627
Hpy166II	GTNNAC	2 cut(s)	570, 579
Hpy188I	TCNGA	5 cut(s)	337, 471, 510, 666, 721
Hpy188III	TCNNGA	2 cut(s)	486, 701
Hpy8I	GTNNAC	2 cut(s)	570, 579
HpyAV	CCTTC	9 cut(s)	406, 446, 492, 510, 543, 624, 648, 666, 693
HpyCH4III	ACNGT	4 cut(s)	63, 248, 455, 558
HpyCH4IV	ACGT	2 cut(s)	219, 402
HpyCH4V	TGCA	3 cut(s)	30, 563, 602
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 19, 64, 137, 140, 339, 599
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	2 cut(s)	219, 402
Hsp92II	CATG	2 cut(s)	82, 103
KspAI	GTTAAC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	125, 745
Lsp1109I	GCAGC	6 cut(s)	9, 42, 118, 127, 329, 444
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	3 cut(s)	83, 782, 793
MaeII	ACGT	2 cut(s)	219, 402
MaeIII	GTNAC	3 cut(s)	271, 398, 633
MboII	GAAGA	4 cut(s)	39, 519, 600, 760
MhlI	GDGCHC	3 cut(s)	476, 515, 671
MlsI	TGGCCA	2 cut(s)	98, 393
MluNI	TGGCCA	2 cut(s)	98, 393
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	211, 214, 386, 412, 475, 699, 702, 708, 715
Mox20I	TGGCCA	2 cut(s)	98, 393
MscI	TGGCCA	2 cut(s)	98, 393
MseI	TTAA	1 cut(s)	578
Msp20I	TGGCCA	2 cut(s)	98, 393
MspA1I	CMGCKG	2 cut(s)	131, 449
MspI	CCGG	6 cut(s)	123, 135, 161, 330, 515, 671
MspR9I	CCNGG	5 cut(s)	161, 360, 390, 515, 671
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	2 cut(s)	360, 390
MwoI	GCNNNNNNNGC	7 cut(s)	10, 19, 64, 137, 140, 339, 599
NciI	CCSGG	3 cut(s)	161, 515, 671
NcoI	CCATGG	1 cut(s)	99
NheI	GCTAGC	1 cut(s)	781
NlaIII	CATG	2 cut(s)	82, 103
NlaIV	GGNNCC	3 cut(s)	127, 519, 675
NmuCI	GTSAC	1 cut(s)	633
NspI	RCATGY	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	288
PaeI	GCATGC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	290, 326
PflFI	GACNNNGTC	1 cut(s)	556
PkrI	GCNGC	9 cut(s)	12, 24, 57, 130, 133, 142, 158, 319, 434
Psp6I	CCWGG	2 cut(s)	358, 388
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	2 cut(s)	358, 388
PspN4I	GGNNCC	3 cut(s)	127, 519, 675
PspPI	GGNCC	2 cut(s)	158, 198
PsyI	GACNNNGTC	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	9 cut(s)	11, 23, 56, 129, 132, 141, 157, 318, 433
Sau96I	GGNCC	2 cut(s)	158, 198
ScrFI	CCNGG	5 cut(s)	161, 360, 390, 515, 671
SduI	GDGCHC	3 cut(s)	476, 515, 671
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	288
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
SphI	GCATGC	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	2 cut(s)	129, 156
SspMI	CTAG	3 cut(s)	83, 782, 793
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	5 cut(s)	159, 358, 388, 513, 669
StyI	CCWWGG	2 cut(s)	99, 753
TaaI	ACNGT	4 cut(s)	63, 248, 455, 558
TaiI	ACGT	2 cut(s)	222, 405
TaqI	TCGA	3 cut(s)	206, 288, 417
TauI	GCSGC	2 cut(s)	131, 159
TfiI	GAWTC	2 cut(s)	290, 326
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	7 cut(s)	10, 22, 55, 131, 140, 317, 432
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	3 cut(s)	162, 525, 606
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	200
Tth111I	GACNNNGTC	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	198
XceI	RCATGY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	3 cut(s)	83, 782, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.