RLG00000003394

Plastocyanin-like domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
48027460 .. 48027978
519 bp
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UTR
Exon/CDS
Intron
RLM00000003394

Sequence Viewer

Length: 438 bp
ATGGCTTTGAGATATACCATAACAATTTTCTTTGTTACGATGGTTCTTCTGAGTGTTTGTTCCGAAGCTTCTTCATCTGAGGCTATTCACAAAGCTGGAGCTGTTTATAGTGTCAGCGACTCAATTGGCAAGGATTTTCATAACCTGATGGAAGTGACCAGAGAAGATTATCAATCCTGCAACACAAGGTATCCGATGGCCTTCTACGTTGCTGGACTTGCTGCTATCCCTCTTGAAAACCGGACGACTACTACATCTATGGTAGAAATTTCAAACCACAGCGGTATGCTAGGACTCTCAAGGAACCAAGGCCACTGCCAAGCAAGACAAAAACTTCACGTCAAGGTCACTCTACAAATGGATCACCACTTCACTGCAAGTCCAACCCCAGCACCAGAGAGTGATAATGTCCAAGTCAAAAGCATTAAATTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.09

Weight (kDa)

7.05

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 267, 428
AgsI TTSAA 2 cut(s) 236, 273
AjiI CACGTC 1 cut(s) 340
AluBI AGCT 3 cut(s) 68, 95, 101
AluI AGCT 3 cut(s) 68, 95, 101
AlwI GGATC 1 cut(s) 369
AoxI GGCC 2 cut(s) 198, 310
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 267, 428
AsuHPI GGTGA 1 cut(s) 356
BbvI GCAGC 1 cut(s) 208
BccI CCATC 3 cut(s) 34, 142, 190
BciVI GTATCC 1 cut(s) 201
BfaI CTAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 41, 69
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 388
BshFI GGCC 2 cut(s) 200, 312
BsiSI CCGG 1 cut(s) 241
BsnI GGCC 2 cut(s) 200, 312
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 200, 312
BspCNI CTCAG 2 cut(s) 42, 70
BspLI GGNNCC 1 cut(s) 305
BspPI GGATC 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 50, 78
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 208
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 200, 312
BtrI CACGTC 1 cut(s) 340
BtsI GCAGTG 2 cut(s) 313, 372
BtsIMutI CAGTG 2 cut(s) 313, 372
CviJI RGCY 7 cut(s) 5, 68, 83, 95, 101, 200, 312
CviKI_1 RGCY 7 cut(s) 5, 68, 83, 95, 101, 200, 312
DdeI CTNAG 2 cut(s) 50, 78
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaiI YATR 6 cut(s) 15, 20, 108, 141, 260, 287
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 2 cut(s) 200, 312
HapII CCGG 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 119, 294
HpaII CCGG 1 cut(s) 241
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 4 cut(s) 51, 64, 79, 195
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 207, 339
HpyCH4V TGCA 2 cut(s) 180, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 50, 78
HpySE526I ACGT 2 cut(s) 207, 339
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 81, 158, 172, 190, 198, 254, 402, 408
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 207, 339
MaeIII GTNAC 3 cut(s) 34, 154, 346
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 38, 63, 176
MfeI CAATTG 1 cut(s) 123
MluCI AATT 4 cut(s) 24, 123, 267, 428
MlyI GAGTC 2 cut(s) 113, 288
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 2 cut(s) 73, 240
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 241
MunI CAATTG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 154, 346
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 113, 288
PpsI GAGTC 2 cut(s) 113, 288
PspFI CCCAGC 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 361
SchI GAGTC 2 cut(s) 113, 288
SetI ASST 8 cut(s) 70, 97, 103, 147, 191, 210, 342, 348
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 4 cut(s) 24, 123, 267, 428
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 307
TaiI ACGT 2 cut(s) 210, 342
TasI AATT 4 cut(s) 24, 123, 267, 428
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 320, 379
TseFI GTSAC 2 cut(s) 154, 346
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 2 cut(s) 154, 346
TspDTI ATGAA 2 cut(s) 63, 128
TspRI CASTG 2 cut(s) 320, 379
XapI RAATTY 2 cut(s) 267, 428
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.