Prupe.4G207100_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001607
Physical Location & Seq
Reverse (-)
12909214 .. 12909849
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G207100.1

Sequence Viewer

Length: 543 bp
ATGGCTTTGGGAAAAAGTCCACTCATTTGCTTGGTTATGATTGCTTTATGTGGTGTTTGTTTCGGTGCTGTGTATAGAGTTGGTGACTTTAGCGGGTGGTCTTCTAGAGGCCTTGTTGATTACAACGAGTGGGCTTCAACAAAAGACTTCCATGTTGGTGACACGCTTACATTTTCTTACAACAATCAATTCCATAACGTGATGCAAGTTACTAACGAAGATTACGAATCTTGCAACCCTGCTTCTCCTATCGCAGTCTATGCCTCGGGATCTGACACCATCACCCTTGAAAGGCCCGACAACTTTTACTTTTTGTGTGGTGCTCCTGGTCATTGTCAAGCCGGACAAAGGGTTGAGATTCTGGCCACCCTACCTACACCAGATGACTCATTTACAGGTCCAAGTCCGACACCTTCAGCCTCTCCTGCTGATGCGATGTCGCCAAGCTCAGCTCTAAGTAGCAGTCCTGCTCTTCATTTTTCGAAACTTGGGTTGGGTGTCACCATGTTTGTGTTATCCACTCTTTTGGGTTTTTTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

19.18

Weight (kDa)

4.63

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 291, 348
AgsI TTSAA 2 cut(s) 138, 290
AjnI CCWGG 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 2 cut(s) 447, 452
AluI AGCT 2 cut(s) 447, 452
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 3 cut(s) 109, 293, 363
AspS9I GGNCC 2 cut(s) 294, 398
AsuHPI GGTGA 4 cut(s) 95, 170, 274, 493
AsuII TTCGAA 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 325
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 294, 398
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 192, 421
BpiI GAAGAC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 448
Bpu14I TTCGAA 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 348
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 291, 348
BseMII CTCAG 1 cut(s) 462
BshFI GGCC 3 cut(s) 111, 295, 365
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 291, 348
BsnI GGCC 3 cut(s) 111, 295, 365
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 269
Bsp1720I GCTNAGC 1 cut(s) 448
BspACI CCGC 1 cut(s) 93
BspANI GGCC 3 cut(s) 111, 295, 365
BspCNI CTCAG 1 cut(s) 461
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 477
BspT104I TTCGAA 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 448, 455
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 260, 425
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 3 cut(s) 111, 295, 365
BtgZI GCGATG 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 294, 398
CviAII CATG 2 cut(s) 152, 505
CviJI RGCY 9 cut(s) 5, 111, 134, 295, 341, 365, 419, 447, 452
CviKI_1 RGCY 9 cut(s) 5, 111, 134, 295, 341, 365, 419, 447, 452
DdeI CTNAG 2 cut(s) 448, 455
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco147I AGGCCT 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 155, 508
FaiI YATR 7 cut(s) 38, 49, 75, 153, 195, 261, 506
FatI CATG 2 cut(s) 151, 504
FauI CCCGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 105
HaeIII GGCC 3 cut(s) 111, 295, 365
HapII CCGG 1 cut(s) 342
Hin1II CATG 2 cut(s) 155, 508
HinfI GANTC 3 cut(s) 227, 358, 386
HpaII CCGG 1 cut(s) 342
HphI GGTGA 4 cut(s) 95, 170, 274, 493
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 274, 408
Hpy188III TCNNGA 2 cut(s) 105, 267
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 423
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 205, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 425
HpyF3I CTNAG 2 cut(s) 448, 455
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 155, 508
Kzo9I GATC 1 cut(s) 269
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 9 cut(s) 252, 312, 339, 347, 355, 381, 393, 438, 480
LweI GCATC 2 cut(s) 192, 421
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 4 cut(s) 83, 158, 208, 499
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 93, 230, 464
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 3 cut(s) 101, 274, 430
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MslI CAYNNNNRTG 2 cut(s) 156, 509
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 260, 425
NdeII GATC 1 cut(s) 269
NlaIII CATG 2 cut(s) 155, 508
NmuCI GTSAC 3 cut(s) 83, 158, 499
NspV TTCGAA 1 cut(s) 482
PceI AGGCCT 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 227, 358
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 2 cut(s) 294, 398
PsuI RGATCY 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 156, 509
SapI GCTCTTC 1 cut(s) 477
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 2 cut(s) 294, 398
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 325
SetI ASST 6 cut(s) 201, 376, 400, 415, 449, 454
SfaNI GCATC 2 cut(s) 192, 421
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 156, 509
Sse9I AATT 1 cut(s) 188
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 105
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 325
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 482
TasI AATT 1 cut(s) 188
TfiI GAWTC 2 cut(s) 227, 358
TseFI GTSAC 3 cut(s) 83, 158, 499
Tsp45I GTSAC 3 cut(s) 83, 158, 499
TspDTI ATGAA 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 398
XbaI TCTAGA 1 cut(s) 104
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.