Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

11710311 .. 11710829

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATGGCTTTCTCTGGTGCTTGTTCCGGTGCTGTTTATAGAGTTGGAGACTCTGTTGGGTGGAATTCAAGAGGCCTTGTTGATTACAACAAGTGGGCTTCAGTGAAAGATTTTAACGTCCGCGACACTCTCATTTTTGCTTACAATAATCAATTCCACAACGTGATGCAAGTTTCTGATCAAGACTTTCAATCTTGTAATGCATCTGCTATCTCAACATACACCTCTGGCTCTGACACCAGCACCCTTAAAAGGCCTGGCCACTATTACTTTCTTTGTGGTGCTCCTGGCCATTGCCAAGCCGGACAAAAGGTTGACATCAAGGTCACTCTGCCTGTTCCAAAAAGTTCGATCCCAAGTCCAAGTCCGTCACCTTATGGATTCTCACCACCTTCAGTCTCTCATCCTGAAGAGATTTCACCAAGCTTAACTCTTAGCAGTGCTCCAACTCTTAACTTTTCAAAGCTTGGATTTGCTATTACCGCTTTTATGTTAAGTCTTTTGTGTTTTGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

173

Amino Acids

18.57

Weight (kDa)

7.64

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	121, 483
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	2 cut(s)	259, 289
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	3 cut(s)	84, 378, 429
AdeI	CACNNNGTG	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	69, 191, 462
AjnI	CCWGG	2 cut(s)	256, 286
AluBI	AGCT	2 cut(s)	426, 466
AluI	AGCT	2 cut(s)	426, 466
Alw21I	GWGCWC	2 cut(s)	286, 445
Alw26I	GTCTC	2 cut(s)	42, 403
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	4 cut(s)	73, 254, 259, 289
ApoI	RAATTY	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	363, 378, 411
BalI	TGGCCA	2 cut(s)	261, 291
Bbv12I	GWGCWC	2 cut(s)	286, 445
BciT130I	CCWGG	2 cut(s)	258, 288
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	42, 403
BfaI	CTAG	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	258, 288
BmrFI	CCNGG	2 cut(s)	258, 288
BmsI	GCATC	2 cut(s)	156, 212
BsaWI	WCCGGW	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	258, 288
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	75, 256, 261, 291
BsiHKAI	GWGCWC	2 cut(s)	286, 445
BsiSI	CCGG	2 cut(s)	27, 303
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	42, 403
BsnI	GGCC	4 cut(s)	75, 256, 261, 291
Bsp1286I	GDGCHC	2 cut(s)	286, 445
Bsp143I	GATC	2 cut(s)	178, 351
BspACI	CCGC	2 cut(s)	121, 483
BspANI	GGCC	4 cut(s)	75, 256, 261, 291
BspFNI	CGCG	1 cut(s)	123
BspPI	GGATC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	292
BssMI	GATC	2 cut(s)	178, 351
Bst2UI	CCWGG	2 cut(s)	258, 288
Bst6I	CTCTTC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	181, 354
BstMAI	GTCTC	2 cut(s)	42, 403
BstMBI	GATC	2 cut(s)	178, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	258, 288
BstSCI	CCNGG	2 cut(s)	256, 286
BstUI	CGCG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	75, 256, 261, 291
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	108, 445
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	2 cut(s)	180, 353
DpnII	GATC	2 cut(s)	178, 351
DraIII	CACNNNGTG	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	2 cut(s)	259, 289
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco147I	AGGCCT	2 cut(s)	75, 256
Eco57I	CTGAAG	3 cut(s)	84, 378, 429
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	256, 286
EcoT22I	ATGCAT	1 cut(s)	205
FaiI	YATR	4 cut(s)	39, 220, 378, 491
FbaI	TGATCA	1 cut(s)	178
FokI	GGATG	1 cut(s)	390
FspBI	CTAG	1 cut(s)	517
HaeIII	GGCC	4 cut(s)	75, 256, 261, 291
HapII	CCGG	2 cut(s)	27, 303
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	424, 464
HinfI	GANTC	2 cut(s)	50, 381
HpaII	CCGG	2 cut(s)	27, 303
HphI	GGTGA	3 cut(s)	363, 378, 411
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	178, 235
Hpy188III	TCNNGA	3 cut(s)	69, 182, 407
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	402
HpyCH4IV	ACGT	2 cut(s)	117, 162
HpyCH4V	TGCA	2 cut(s)	169, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	2 cut(s)	117, 162
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	178, 351
LmnI	GCTCC	2 cut(s)	289, 448
LweI	GCATC	2 cut(s)	156, 212
MaeI	CTAG	1 cut(s)	517
MaeII	ACGT	2 cut(s)	117, 162
MaeIII	GTNAC	2 cut(s)	325, 369
MalI	GATC	2 cut(s)	180, 353
MboI	GATC	2 cut(s)	178, 351
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	286, 445
MlsI	TGGCCA	2 cut(s)	261, 291
MluCI	AATT	2 cut(s)	64, 152
MluNI	TGGCCA	2 cut(s)	261, 291
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	25, 470
MnlI	CCTC	2 cut(s)	65, 235
Mox20I	TGGCCA	2 cut(s)	261, 291
Mph1103I	ATGCAT	1 cut(s)	205
MscI	TGGCCA	2 cut(s)	261, 291
MseI	TTAA	5 cut(s)	114, 249, 428, 453, 494
Msp20I	TGGCCA	2 cut(s)	261, 291
MspI	CCGG	2 cut(s)	27, 303
MspR9I	CCNGG	2 cut(s)	258, 288
MvaI	CCWGG	2 cut(s)	258, 288
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	2 cut(s)	178, 351
NmuCI	GTSAC	2 cut(s)	325, 369
NsiI	ATGCAT	1 cut(s)	205
PceI	AGGCCT	2 cut(s)	75, 256
PfeI	GAWTC	1 cut(s)	381
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	256, 286
PspGI	CCWGG	2 cut(s)	256, 286
SaqAI	TTAA	5 cut(s)	114, 249, 428, 453, 494
Sau3AI	GATC	2 cut(s)	178, 351
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	258, 288
SduI	GDGCHC	2 cut(s)	286, 445
SetI	ASST	9 cut(s)	120, 165, 227, 315, 327, 376, 394, 428, 468
SfaNI	GCATC	2 cut(s)	156, 212
Sse9I	AATT	2 cut(s)	64, 152
SseBI	AGGCCT	2 cut(s)	75, 256
SsiI	CCGC	2 cut(s)	121, 483
SspMI	CTAG	1 cut(s)	517
StuI	AGGCCT	2 cut(s)	75, 256
StyD4I	CCNGG	2 cut(s)	256, 286
TaiI	ACGT	2 cut(s)	120, 165
TaqI	TCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	64, 152
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	5 cut(s)	114, 249, 428, 453, 494
Tru9I	TTAA	5 cut(s)	114, 249, 428, 453, 494
TscAI	CASTG	2 cut(s)	108, 445
TseFI	GTSAC	2 cut(s)	325, 369
Tsp45I	GTSAC	2 cut(s)	325, 369
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	108, 445
XapI	RAATTY	1 cut(s)	64
XspI	CTAG	1 cut(s)	517
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.