Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

22701858 .. 22702414

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCTTGAGAAACACCATAATGATTATCTTTGTTGCAATGGCTTGTGTGGGCGTTTGTTCGGGTGCTGCCCCATCTGAAGCTGTTCATGGTGGAGTTGTTCATAAAGTAGGCGACTCAACTGGGTGGAGCATTTTTGGTGATTACAAGAACTGGGCTTCCACAAAAGAGTTTCACGTCGGAGACACTCTACTTTTCGTTTACGACAAGGAATATCATAACTTGATGGAAGTGAATGGAGAAGATTACCAGTCTTGCAACGCAAAGTCTCCTCTAGCACTCTATGCTGCCGGACTTGATTCTATCCCTCTTGACAAACCTGGCGACTATTACTTCATCTGCGGAAGAAATTTCGAGCCAGACTGGTATGCTATGACTCTCAAGGAACCAGACCACTGCCAAGCAGGACAAAAGCTTCATGCCAAGGTCACTGTACCAATATCAGATCGCCATTCTGTTGCAAGTCCAACCTCAGCACCAGCTCCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

164

Amino Acids

17.78

Weight (kDa)

5.67

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	43 - 116	3.6e-24	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	435
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	319
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	3 cut(s)	83, 415, 482
AluI	AGCT	3 cut(s)	83, 415, 482
Alw26I	GTCTC	2 cut(s)	177, 273
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	68, 287
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	55, 274
BccI	CCATC	2 cut(s)	82, 220
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	177, 273
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	69, 288
BlsI	GCNGC	2 cut(s)	70, 289
Bme1390I	CCNGG	1 cut(s)	321
BmgBI	CACGTC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	2 cut(s)	132, 163
BmuI	ACTGGG	2 cut(s)	132, 163
Bpu10I	CCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	28, 365
BsaJI	CCNNGG	1 cut(s)	423
Bse1I	ACTGG	4 cut(s)	127, 158, 250, 368
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	4 cut(s)	127, 158, 250, 368
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	55, 274
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	177, 273
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	4 cut(s)	127, 158, 250, 368
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	472
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	2 cut(s)	177, 273
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	55, 274
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	394, 429, 487
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	2 cut(s)	89, 419
CviJI	RGCY	7 cut(s)	5, 44, 83, 158, 358, 415, 482
CviKI_1	RGCY	7 cut(s)	5, 44, 83, 158, 358, 415, 482
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	92, 422
FaiI	YATR	8 cut(s)	20, 90, 105, 219, 285, 369, 374, 420
FatI	CATG	2 cut(s)	88, 418
Fnu4HI	GCNGC	2 cut(s)	69, 288
Fsp4HI	GCNGC	2 cut(s)	69, 288
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	69, 288
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	2 cut(s)	92, 422
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	116, 299, 376
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	79, 182, 445
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	38, 258, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	92, 422
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	2 cut(s)	129, 487
Lsp1109I	GCAGC	2 cut(s)	55, 274
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	2 cut(s)	254, 357
MluCI	AATT	1 cut(s)	349
MlyI	GAGTC	2 cut(s)	110, 370
MmeI	TCCRAC	2 cut(s)	160, 491
MnlI	CCTC	3 cut(s)	282, 318, 481
MroXI	GAANNNNTTC	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	2 cut(s)	92, 422
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	70, 289
PleI	GAGTC	2 cut(s)	110, 370
PpsI	GAGTC	2 cut(s)	110, 370
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	387
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	2 cut(s)	69, 288
Sau3AI	GATC	1 cut(s)	445
SchI	GAGTC	2 cut(s)	110, 370
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	7 cut(s)	85, 180, 322, 417, 429, 473, 484
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	7, 380
SmoI	CTYRAG	2 cut(s)	7, 380
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	2 cut(s)	401, 436
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	68, 287
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	77, 92, 325, 407
TspRI	CASTG	2 cut(s)	401, 436
XapI	RAATTY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.