MD14G1053600.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0001607
Physical Location & Seq
Forward (+)
5385668 .. 5386303
636 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1053600.v1.1.491

Sequence Viewer

Length: 636 bp
ATGCAAGGTCGCGTCAAGTCTTTCACTCAAACAAATTTCAGTTCCTTTCCTTCACTCTCGATTTGTCCTTCCTCTTCTATTTCTTTAGCCATGGCTCTGCAAAACACTATTGCACTAATTTTCTTCGTGATGATGATGGTGCTTTCTGGTGTTTGTTTAGGTGATGTTTTTAAAGTTGGCGATTATGATGGGTGGACATCTAGGGGTCTCGTTGATTACAACAAGTGGGCTTCAACAAAAGAGTTTCATGTCGGTGATACTCTCATATTCGCTTACAATAGTCAATTCCACAACTTGATGCAAGTTACGAAACAAGATTTTGAATCTTGCAACACTACCGCTGCTATCGCAGTTTATACCTCTGGTTCCGACACCATCACTCTTAAAAGGCCCGACCACTATTACTTTCTTTGTGGTGCTCCCGGCCATTGTCAAGCGGGACAAAAGCTGGATATCAAGGTTACCCTTCCTATACCGCAGAGTTCGCTGGCAAGTCCAAACCCGGCACCTCAGGGATCATTACCTTCAGACTCTCATCCAAGCTCAACTCCAAGCAGTGCTCCGACTATTTATTTTTCGAAGCTTGGATTGGCCGTTACCACTCTTGTGTTATGTCTTTTGAGTGCTGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

212

Amino Acids

22.77

Weight (kDa)

6.93

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 65 - 148 8.6e-30 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 339, 437, 476
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 2 cut(s) 424, 591
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 510
AgsI TTSAA 2 cut(s) 234, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 3 cut(s) 448, 543, 583
AluI AGCT 3 cut(s) 448, 543, 583
Alw21I GWGCWC 2 cut(s) 421, 562
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 523
AoxI GGCC 3 cut(s) 389, 424, 591
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 390
AsuC2I CCSGG 2 cut(s) 423, 503
AsuHPI GGTGA 2 cut(s) 173, 266
AsuII TTCGAA 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 510
BanI GGYRCC 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 421, 562
BbvI GCAGC 1 cut(s) 328
BccI CCATC 3 cut(s) 130, 182, 383
BceAI ACGGC 1 cut(s) 578
BcnI CCSGG 2 cut(s) 423, 503
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 423, 503
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 367, 507
BmrFI CCNGG 2 cut(s) 423, 503
BmsI GCATC 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 423, 503
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 90
Bse21I CCTNAGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 535
BseMII CTCAG 1 cut(s) 524
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 391, 426, 593
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 2 cut(s) 421, 562
BsiSI CCGG 2 cut(s) 423, 503
BslFI GGGAC 1 cut(s) 453
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 3 cut(s) 391, 426, 593
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 421, 562
Bsp143I GATC 1 cut(s) 515
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 3 cut(s) 339, 437, 476
BspANI GGCC 3 cut(s) 391, 426, 593
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 367, 507
BspPI GGATC 1 cut(s) 523
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 535
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 1 cut(s) 518
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 2 cut(s) 347, 484
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 421, 501
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 510
BsuRI GGCC 3 cut(s) 391, 426, 593
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 489
Cfr13I GGNCC 1 cut(s) 390
CviAII CATG 2 cut(s) 91, 248
CviJI RGCY 9 cut(s) 89, 95, 230, 391, 426, 448, 543, 583, 593
CviKI_1 RGCY 9 cut(s) 89, 95, 230, 391, 426, 448, 543, 583, 593
DdeI CTNAG 1 cut(s) 510
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 424, 591
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 510
Eco81I CCTNAGG 1 cut(s) 510
Eco91I GGTNACC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 460
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 94, 251
FaiI YATR 7 cut(s) 92, 186, 249, 266, 357, 473, 613
FaqI GGGAC 1 cut(s) 453
FatI CATG 2 cut(s) 90, 247
FauI CCCGC 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 522
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 3 cut(s) 391, 426, 593
HapII CCGG 2 cut(s) 423, 503
Hin1II CATG 2 cut(s) 94, 251
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 2 cut(s) 323, 530
HpaII CCGG 2 cut(s) 423, 503
HphI GGTGA 2 cut(s) 173, 266
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 370, 529, 564
Hpy188III TCNNGA 2 cut(s) 58, 127
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 60, 78, 476, 534
HpyCH4V TGCA 5 cut(s) 4, 100, 113, 301, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 484
HpyF3I CTNAG 1 cut(s) 510
Hsp92II CATG 2 cut(s) 94, 251
Kzo9I GATC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 424, 565
LpnPI CCDG 7 cut(s) 132, 348, 434, 436, 473, 497, 516
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 304, 460, 595
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 2 cut(s) 66, 115
MhlI GDGCHC 2 cut(s) 421, 562
MluCI AATT 3 cut(s) 34, 117, 284
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 2 cut(s) 393, 587
MnlI CCTC 3 cut(s) 82, 370, 519
MseI TTAA 2 cut(s) 171, 384
MslI CAYNNNNRTG 2 cut(s) 252, 605
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 423, 503
MspR9I CCNGG 2 cut(s) 423, 503
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 347, 484
NciI CCSGG 2 cut(s) 423, 503
NcoI CCATGG 1 cut(s) 90
NdeII GATC 1 cut(s) 515
NlaIII CATG 2 cut(s) 94, 251
NlaIV GGNNCC 2 cut(s) 367, 507
NspV TTCGAA 1 cut(s) 578
OliI CACNNNNGTG 1 cut(s) 605
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PspEI GGTNACC 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 367, 507
PspPI GGNCC 1 cut(s) 390
RseI CAYNNNNRTG 2 cut(s) 252, 605
SaqAI TTAA 2 cut(s) 171, 384
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 423, 503
SduI GDGCHC 2 cut(s) 421, 562
SetI ASST 9 cut(s) 10, 163, 362, 450, 462, 511, 526, 545, 585
SfaNI GCATC 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 578
SmiMI CAYNNNNRTG 2 cut(s) 252, 605
Sse9I AATT 3 cut(s) 34, 117, 284
SsiI CCGC 3 cut(s) 339, 437, 476
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 421, 501
StyI CCWWGG 1 cut(s) 90
TaqI TCGA 2 cut(s) 59, 578
TasI AATT 3 cut(s) 34, 117, 284
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 171, 384
Tru9I TTAA 2 cut(s) 171, 384
TscAI CASTG 1 cut(s) 562
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 562
XapI RAATTY 1 cut(s) 34
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.