Rmu_sc0001072.1_g000006

Plastocyanin-like domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001072.1
Physical Location & Seq
Reverse (-)
18777 .. 19979
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001072.1_g000006.1.cds

Sequence Viewer

Length: 372 bp
atgggaatccagagagctacatgggtttgcaaagcggtgattccaactgttggaatgggagaaatgggtggcctgaccttgccatttacacaccacgttcaggattttcataacctgatggaagtgaccagagaagattataaatcctgcaacacaaggtatccgatggccttctacattgctggacttgatgctatccctcttgaaaactggacgactactacatctgtggtagaaatttcgaaccacagcggtatgctaggactctcaaggaactatggccactgccaagcaagacaaaaacttcacgccaaggtcactctacaaattgatcaccacttcactgcaagtccaaccccagtaccagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.75

Weight (kDa)

6.69

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 2 cut(s) 35, 252
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 50, 100
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AoxI GGCC 3 cut(s) 70, 168, 280
ApoI RAATTY 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 49, 326
AsuII TTCGAA 1 cut(s) 242
BaeI ACNNNNGTAYC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 282
BccI CCATC 2 cut(s) 112, 160
BciVI GTATCC 1 cut(s) 171
BclI TGATCA 1 cut(s) 331
BfaI CTAG 1 cut(s) 260
BfuI GTATCC 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 100
Bse1I ACTGG 2 cut(s) 215, 359
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 50, 100
BseMI GCAATG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 215, 359
BshFI GGCC 3 cut(s) 72, 170, 282
BslI CCNNNNNNNGG 2 cut(s) 50, 100
BsnI GGCC 3 cut(s) 72, 170, 282
Bsp119I TTCGAA 1 cut(s) 242
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 35, 252
BspANI GGCC 3 cut(s) 72, 170, 282
BspT104I TTCGAA 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 215, 359
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 242
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 3 cut(s) 72, 170, 282
BtsI GCAGTG 2 cut(s) 283, 342
BtsIMutI CAGTG 2 cut(s) 283, 342
Csp6I GTAC 1 cut(s) 362
CviAII CATG 1 cut(s) 21
CviJI RGCY 4 cut(s) 17, 72, 170, 282
CviKI_1 RGCY 4 cut(s) 17, 72, 170, 282
CviQI GTAC 1 cut(s) 362
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 24
FaiI YATR 5 cut(s) 22, 111, 141, 257, 279
FatI CATG 1 cut(s) 20
FbaI TGATCA 1 cut(s) 331
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 3 cut(s) 72, 170, 282
Hin1II CATG 1 cut(s) 24
HinfI GANTC 3 cut(s) 6, 40, 264
HphI GGTGA 2 cut(s) 49, 326
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 10, 101, 203
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 30, 150, 347
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 8 cut(s) 23, 86, 86, 128, 142, 160, 168, 196
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 124, 316
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 2 cut(s) 237, 327
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 2 cut(s) 31, 68
MnlI CCTC 1 cut(s) 210
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 252
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 24
NmuCI GTSAC 2 cut(s) 124, 316
NspV TTCGAA 1 cut(s) 242
PfeI GAWTC 2 cut(s) 6, 40
PflMI CCANNNNNTGG 1 cut(s) 50
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PsiI TTATAA 1 cut(s) 141
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 258
SetI ASST 6 cut(s) 19, 80, 99, 117, 161, 318
SfaNI GCATC 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 237, 327
SsiI CCGC 2 cut(s) 35, 252
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 242
TasI AATT 2 cut(s) 237, 327
TfiI GAWTC 2 cut(s) 6, 40
TscAI CASTG 2 cut(s) 290, 349
TseFI GTSAC 2 cut(s) 124, 316
Tsp45I GTSAC 2 cut(s) 124, 316
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 2 cut(s) 290, 349
Van91I CCANNNNNTGG 1 cut(s) 50
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.