Rmu_sc0002709.1_g000045

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002709.1
OG0001607
Physical Location & Seq
Reverse (-)
164050 .. 164541
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002709.1_g000045.1.cds

Sequence Viewer

Length: 492 bp
atgactctttgcggtgcttgttctggtgctggtgctgtttacaaagtcggcggcccggatggttggatagtaggtgttgattataaccagtggtcctcatcaaaagagtttcgcgtaggcgatggtcttttcttttcttacaataagcaataccacaatgtggttcaagtatctgagcaaggtttcaaatcctgcaactccagctctcccatcgcagcttatagttccggttcagacacgatcacgcttgaaaggcctggccactattactttctttgtggtgctcctggtcattgtgaagacggacagaaggtcgacgttcaggtcagccgtcccatacccgacaatccaagcccggcaccttctggattgtcttctccttcaactcctcatcctgaagagagaccaccacactcagcggctctgaccaatgctccaaagcttgccttggctgtcttcgcttctgtgctggcatggtgctttctaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

163

Amino Acids

17.3

Weight (kDa)

5.89

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AasI GACNNNNNNGTC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 12, 51, 419
AcoI YGGCCR 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 4 cut(s) 167, 187, 251, 384
AhdI GACNNNNNGTC 1 cut(s) 311
AjnI CCWGG 2 cut(s) 256, 286
AluBI AGCT 3 cut(s) 204, 218, 442
AluI AGCT 3 cut(s) 204, 218, 442
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 397
AoxI GGCC 3 cut(s) 52, 254, 259
ApeKI GCWGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 53, 93
AsuC2I CCSGG 2 cut(s) 56, 356
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 261
BanI GGYRCC 1 cut(s) 358
BbsI GAAGAC 3 cut(s) 306, 366, 448
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 227
BccI CCATC 3 cut(s) 53, 116, 218
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 2 cut(s) 258, 288
BcnI CCSGG 2 cut(s) 56, 356
BcoDI GTCTC 1 cut(s) 397
BisI GCNGC 3 cut(s) 52, 216, 420
BlsI GCNGC 3 cut(s) 53, 217, 421
Bme1390I CCNGG 4 cut(s) 56, 258, 288, 356
Bme18I GGWCC 1 cut(s) 93
BmeRI GACNNNNNGTC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 53, 93
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 4 cut(s) 56, 258, 288, 356
BpiI GAAGAC 3 cut(s) 306, 366, 448
BpmI CTGGAG 1 cut(s) 184
BpuMI CCSGG 2 cut(s) 56, 356
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 2 cut(s) 258, 288
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 64, 391
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 165, 429
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 54, 256, 261
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 3 cut(s) 56, 228, 356
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 3 cut(s) 54, 256, 261
Bso31I GGTCTC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 3 cut(s) 12, 51, 419
BspANI GGCC 3 cut(s) 54, 256, 261
BspCNI CTCAG 2 cut(s) 166, 428
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 258, 288
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 444, 471
BstDEI CTNAG 2 cut(s) 174, 415
BstF5I GGATG 2 cut(s) 64, 391
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 3 cut(s) 201, 253, 458
BstNI CCWGG 2 cut(s) 258, 288
BstSCI CCNGG 4 cut(s) 54, 256, 286, 354
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 3 cut(s) 306, 366, 448
BsuRI GGCC 3 cut(s) 54, 256, 261
BtgZI GCGATG 2 cut(s) 135, 196
BtsCI GGATG 2 cut(s) 64, 391
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 444, 471
Cfr13I GGNCC 2 cut(s) 53, 93
CviAII CATG 1 cut(s) 474
DdeI CTNAG 2 cut(s) 174, 415
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
DraIII CACNNNGTG 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 323
DriI GACNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 256, 286
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 1 cut(s) 477
FaiI YATR 4 cut(s) 84, 222, 338, 475
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 473
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 52, 216, 420
FokI GGATG 2 cut(s) 71, 378
Fsp4HI GCNGC 3 cut(s) 52, 216, 420
GluI GCNGC 3 cut(s) 52, 216, 420
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 3 cut(s) 54, 256, 261
HapII CCGG 3 cut(s) 56, 228, 356
Hin1II CATG 1 cut(s) 477
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 1 cut(s) 4
HpaII CCGG 3 cut(s) 56, 228, 356
Hpy166II GTNNAC 2 cut(s) 40, 316
Hpy188I TCNGA 3 cut(s) 175, 235, 426
Hpy188III TCNNGA 2 cut(s) 366, 395
Hpy8I GTNNAC 2 cut(s) 40, 316
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 304, 372, 390
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 253, 458
HpyF3I CTNAG 2 cut(s) 174, 415
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 1 cut(s) 477
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 289, 439
Lsp1109I GCAGC 1 cut(s) 227
MaeII ACGT 1 cut(s) 318
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 4 cut(s) 311, 366, 410, 448
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 1 cut(s) 487
MluNI TGGCCA 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 106, 399
Mox20I TGGCCA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 56, 228, 356
MspR9I CCNGG 4 cut(s) 56, 258, 288, 356
MvaI CCWGG 2 cut(s) 258, 288
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 201, 253, 458
NciI CCSGG 2 cut(s) 56, 356
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 477
NlaIV GGNNCC 1 cut(s) 360
PceI AGGCCT 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 3 cut(s) 53, 217, 421
PsiI TTATAA 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 256, 286
PspGI CCWGG 2 cut(s) 256, 286
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 2 cut(s) 53, 93
SalI GTCGAC 1 cut(s) 314
SatI GCNGC 3 cut(s) 52, 216, 420
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 2 cut(s) 53, 93
ScrFI CCNGG 4 cut(s) 56, 258, 288, 356
SduI GDGCHC 1 cut(s) 286
SetI ASST 9 cut(s) 76, 184, 206, 220, 315, 321, 327, 364, 444
SinI GGWCC 1 cut(s) 93
Sse9I AATT 1 cut(s) 487
SseBI AGGCCT 1 cut(s) 256
SsiI CCGC 3 cut(s) 12, 51, 419
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 4 cut(s) 54, 256, 286, 354
StyI CCWWGG 1 cut(s) 447
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 487
TauI GCSGC 2 cut(s) 54, 422
TscAI CASTG 1 cut(s) 95
TseI GCWGC 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.