Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

11725549 .. 11726325

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G082100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTTTGAGAAACATTGCTGCTCTGGTTTTGTTTGTGATGATGGTTTTGTGTGGTGCTTGTTCTGGTGCTGTTTATAGGGTTGGTGATTCTGATGGCTGGATTTCAAGAGGTCTTGTTGATTACAACAAGTGGGCTTCAACGAAAGATTTTCACGTCGGCGACACCCTTACTTTTGCTTACAACAATCAATTCCACAACGTGATGCAAGTTTCTGATCAAGACTTTCAATCTTGCAATGCTACGTCTGCTATAGCAGCATACACCTCTGGCTCTGACACCTTCACCCTCAAAAGGCCCGGCCACTTTTACTTTCTTTGTGGTGCTCCTGGCCATTGCCAAGCCGGACAAAAGGTCGACATCGAGGTCACCCTACCTGTTCCAGAAAGTATGATTCCGAGTCCAAGCCCGTCGCCTTATGGATCCTCATCACCTTCAGTCTCTCATCCTGAAGAGATGTCACCAAGCTCAACTCTAAGCATTGCTCCAACTCTTAACTCTTCCAAGCTTGGATTTGCTGCTACCGCTTTTGTGTTGGGTCTTTTGCGTTTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

187

Amino Acids

19.9

Weight (kDa)

5.88

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	2 cut(s)	417, 430
AcoI	YGGCCR	2 cut(s)	301, 331
AcuI	CTGAAG	2 cut(s)	420, 471
AdeI	CACNNNGTG	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	108, 141, 230
AhdI	GACNNNNNGTC	1 cut(s)	353
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	468, 508
AluI	AGCT	2 cut(s)	468, 508
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	417, 430
AoxI	GGCC	3 cut(s)	296, 301, 331
ApeKI	GCWGC	3 cut(s)	20, 257, 518
AspS9I	GGNCC	1 cut(s)	297
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	5 cut(s)	98, 277, 361, 423, 453
BalI	TGGCCA	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	7, 269, 505
BccI	CCATC	2 cut(s)	37, 89
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	3 cut(s)	21, 258, 519
BlsI	GCNGC	3 cut(s)	22, 259, 520
Bme1390I	CCNGG	2 cut(s)	300, 330
BmeRI	GACNNNNNGTC	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	2 cut(s)	300, 330
BmsI	GCATC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse3DI	GCAATG	4 cut(s)	15, 244, 334, 480
Bse8I	GATNNNNATC	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	4 cut(s)	15, 244, 334, 480
BseXI	GCAGC	3 cut(s)	7, 269, 505
BshFI	GGCC	3 cut(s)	298, 303, 333
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	300, 345
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	298, 303, 333
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	217, 422
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	3 cut(s)	298, 303, 333
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	417, 430
BsrDI	GCAATG	4 cut(s)	15, 244, 334, 480
BssMI	GATC	2 cut(s)	217, 422
Bst2UI	CCWGG	1 cut(s)	330
Bst6I	CTCTTC	2 cut(s)	447, 505
BstDEI	CTNAG	1 cut(s)	476
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	220, 425
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	2 cut(s)	217, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 257, 524
BstNI	CCWGG	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	298, 328
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	7, 269, 505
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	298, 303, 333
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	2 cut(s)	219, 424
DpnII	GATC	2 cut(s)	217, 422
DraIII	CACNNNGTG	1 cut(s)	202
DrdI	GACNNNNNNGTC	1 cut(s)	365
DriI	GACNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	2 cut(s)	301, 331
Eam1104I	CTCTTC	2 cut(s)	447, 505
Eam1105I	GACNNNNNGTC	1 cut(s)	353
EarI	CTCTTC	2 cut(s)	447, 505
Eco57I	CTGAAG	2 cut(s)	420, 471
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	328
FaiI	YATR	5 cut(s)	78, 254, 262, 392, 420
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	21, 258, 519
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	21, 258, 519
GluI	GCNGC	3 cut(s)	21, 258, 519
HaeIII	GGCC	3 cut(s)	298, 303, 333
HapII	CCGG	2 cut(s)	300, 345
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	89, 394, 400
HpaII	CCGG	2 cut(s)	300, 345
HphI	GGTGA	5 cut(s)	98, 277, 361, 423, 453
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	94, 217, 277, 399
Hpy188III	TCNNGA	4 cut(s)	108, 221, 383, 449
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	161, 415
HpyAV	CCTTC	2 cut(s)	292, 444
HpyCH4IV	ACGT	3 cut(s)	156, 201, 245
HpyCH4V	TGCA	2 cut(s)	208, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 257, 524
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	3 cut(s)	156, 201, 245
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 422
LmnI	GCTCC	2 cut(s)	331, 490
Lsp1109I	GCAGC	3 cut(s)	7, 269, 505
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	3 cut(s)	156, 201, 245
MaeIII	GTNAC	2 cut(s)	367, 459
MalI	GATC	2 cut(s)	219, 424
MboI	GATC	2 cut(s)	217, 422
MboII	GAAGA	2 cut(s)	464, 492
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	1 cut(s)	191
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	5 cut(s)	104, 277, 299, 358, 436
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	2 cut(s)	300, 345
MspR9I	CCNGG	2 cut(s)	300, 330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	248, 257, 524
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	217, 422
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	2 cut(s)	367, 459
PfeI	GAWTC	2 cut(s)	89, 394
PkrI	GCNGC	3 cut(s)	22, 259, 520
PleI	GAGTC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	21, 258, 519
Sau3AI	GATC	2 cut(s)	217, 422
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	300, 330
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	298, 328
TaiI	ACGT	3 cut(s)	159, 204, 248
TaqI	TCGA	2 cut(s)	357, 363
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	89, 394
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	367, 459
TseI	GCWGC	3 cut(s)	20, 257, 518
Tsp45I	GTSAC	2 cut(s)	367, 459
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.