Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

46960373 .. 46960870

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCTTGAGAAACACCATAATGATGTTCTTTGTTGCAATGGCTTGTTTGGGCGTTTGTTCGGGTGCCTCTTCATCGGAGGCTGTTCACAGTGGAGTTGTTTACAAAGTCGGTGACTCAATTGGGTGGAGCATTTTTGGTGATTACAAGAAGTGGACTTCCACAAAAGAGTTTCGCGTCGGAGATACTCTACTTTTCGCTTATGATAAGGAATTTCATAACTTGATGGAAGTGAATGGAGAAGATTACCAATCTTGCAACACAAAGTCTCCTCTAGCACTCTATGCTGCCGGACTTGATTCTATCCCTCTTGACAAACCGGGTGACTATTACTTCATCTGCGGTAGAAATTTCGAACCAGACTGGTATGCCATGACTCTCAAGGAACCAGGTCACTGCCAAGCAGGACAAAAACTTCACGTCAAGGTCACCCTACCAATACCAATATCAGATCACCATGTCGTTGCAAGTCCAACCCCAGCACCAGCGCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

165

Amino Acids

18.16

Weight (kDa)

6.03

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	43 - 116	3.2e-24	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	212, 349
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	212, 349
AspLEI	GCGC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	5 cut(s)	125, 152, 335, 421, 446
AsuII	TTCGAA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	491
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	321, 390
BmgBI	CACGTC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	67, 387
BmrFI	CCNGG	2 cut(s)	321, 390
Bpu14I	TTCGAA	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	28, 365
BpuMI	CCSGG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	478
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	291, 320
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	67, 387
BspT104I	TTCGAA	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	390
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	319, 388
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	97, 394
CfoI	GCGC	1 cut(s)	490
CseI	GACGC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	388
CviAII	CATG	2 cut(s)	373, 458
CviJI	RGCY	3 cut(s)	5, 44, 83
CviKI_1	RGCY	3 cut(s)	5, 44, 83
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	376, 461
FaiI	YATR	7 cut(s)	20, 204, 219, 285, 369, 374, 459
FatI	CATG	2 cut(s)	372, 457
Fnu4HI	GCNGC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	288
GsaI	CCCAGC	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	291, 320
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	376, 461
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	3 cut(s)	116, 299, 376
HpaII	CCGG	2 cut(s)	291, 320
HphI	GGTGA	5 cut(s)	125, 152, 335, 421, 446
Hpy166II	GTNNAC	3 cut(s)	88, 103, 156
Hpy188I	TCNGA	3 cut(s)	79, 182, 451
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	3 cut(s)	88, 103, 156
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	38, 258, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	376, 461
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	8 cut(s)	304, 333, 349, 372, 375, 390, 402, 492
Lsp1109I	GCAGC	1 cut(s)	274
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	4 cut(s)	113, 323, 392, 427
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	2 cut(s)	63, 254
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	3 cut(s)	120, 212, 349
MlyI	GAGTC	2 cut(s)	110, 370
MmeI	TCCRAC	2 cut(s)	160, 497
MnlI	CCTC	4 cut(s)	73, 79, 282, 318
MslI	CAYNNNNRTG	2 cut(s)	20, 23
MspI	CCGG	2 cut(s)	291, 320
MspR9I	CCNGG	2 cut(s)	321, 390
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	2 cut(s)	376, 461
NlaIV	GGNNCC	2 cut(s)	67, 387
NmuCI	GTSAC	4 cut(s)	113, 323, 392, 427
NspV	TTCGAA	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	2 cut(s)	110, 370
PpsI	GAGTC	2 cut(s)	110, 370
Psp6I	CCWGG	1 cut(s)	388
PspEI	GGTNACC	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	67, 387
RseI	CAYNNNNRTG	2 cut(s)	20, 23
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	451
SchI	GAGTC	2 cut(s)	110, 370
ScrFI	CCNGG	2 cut(s)	321, 390
SetI	ASST	3 cut(s)	394, 423, 429
SexAI	ACCWGGT	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	20, 23
SmlI	CTYRAG	2 cut(s)	7, 380
SmoI	CTYRAG	2 cut(s)	7, 380
Sse9I	AATT	3 cut(s)	120, 212, 349
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	319, 388
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	120, 212, 349
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	2 cut(s)	97, 401
TseFI	GTSAC	4 cut(s)	113, 323, 392, 427
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	4 cut(s)	113, 323, 392, 427
TspDTI	ATGAA	3 cut(s)	63, 206, 325
TspRI	CASTG	2 cut(s)	97, 401
XapI	RAATTY	2 cut(s)	212, 349
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.