Prupe.4G207400_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001607
Physical Location & Seq
Reverse (-)
12917995 .. 12918847
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G207400.1

Sequence Viewer

Length: 594 bp
ATGGCTTCGGAAAAAAGTACACTGATTTTCTTGGTTATGCTTGCTTTATGTGGTGTTTGTTTTGGTGTTGTGCATAGAGTTGGTGACTCTAGTGGGTGGTCTTCTAGAGGCCTTGTTGATTACAACGAGTGGACTTCAACAAAAGACTTCTATGTTGGCGACACACTCATATTTGCTTACAACAATCAATTCCACAACGTGATGCAAGTTACTAACCAAGATTACGAATCTTGCAACCCTACTTCTCCGATCGCAGTCTATACCTCGGGATCTGACAACATCACCCTTGATGGGCCTGGCAACTTTTACTTTTTGTGTGGTGCTGCTGGCCATTGTCAAGCCGGACAAAGGGTTGAGATCATGGCCACCCTACCTACACCAGATGGCTCTTTTGTAAGTCCAAGCCCGGCACCTTATGGATCCTCACCTTCAGCTTCTCATTCAGAAGTGTCGCCAAGCTCTGAACAAAGTAGTGGTCCTGCTCCTCATTCTGAAATGATGTCGCCAAGCTCAGCTCTAAGCATTCATTTTTCGAAACTTGGGTTGGGTGTCACCGTGTTTGTGTTATCTACTCTTTTGGGTCTTGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

198

Amino Acids

20.87

Weight (kDa)

4.81

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 409
AclWI GGATC 3 cut(s) 277, 414, 427
AcoI YGGCCR 2 cut(s) 328, 363
AcuI CTGAAG 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 291, 348
AgsI TTSAA 1 cut(s) 138
AjnI CCWGG 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 4 cut(s) 434, 459, 510, 515
AluI AGCT 4 cut(s) 434, 459, 510, 515
AlwI GGATC 3 cut(s) 277, 414, 427
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 4 cut(s) 109, 293, 328, 363
ApeKI GCWGC 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspS9I GGNCC 2 cut(s) 293, 476
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 4 cut(s) 95, 274, 417, 544
AsuII TTCGAA 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 476
BalI TGGCCA 2 cut(s) 330, 365
BamHI GGATCC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 284, 377
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 407
BfaI CTAG 2 cut(s) 90, 105
BisI GCNGC 1 cut(s) 324
BlpI GCTNAGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 297, 407
Bme18I GGWCC 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 293, 476
BmiI GGNNCC 2 cut(s) 411, 421
BmrFI CCNGG 2 cut(s) 297, 407
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 511
Bpu14I TTCGAA 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 348
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 291, 348
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 4 cut(s) 111, 295, 330, 365
BshNI GGYRCC 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 342, 407
BslI CCNNNNNNNGG 2 cut(s) 291, 348
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 4 cut(s) 111, 295, 330, 365
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 533
Bsp143I GATC 4 cut(s) 249, 269, 357, 419
Bsp1720I GCTNAGC 1 cut(s) 511
BspANI GGCC 4 cut(s) 111, 295, 330, 365
BspCNI CTCAG 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 411, 421
BspPI GGATC 3 cut(s) 277, 414, 427
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 409
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 4 cut(s) 249, 269, 357, 419
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 556
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 42, 328
BstDEI CTNAG 2 cut(s) 511, 518
BstKTI GATC 4 cut(s) 252, 272, 360, 422
BstMBI GATC 4 cut(s) 249, 269, 357, 419
BstMCI CGRYCG 1 cut(s) 252
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 295, 405
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 269, 419
BstYI RGATCY 2 cut(s) 269, 419
BsuRI GGCC 4 cut(s) 111, 295, 330, 365
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 42, 328
Cfr13I GGNCC 2 cut(s) 293, 476
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 361
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 511, 518
DpnI GATC 4 cut(s) 251, 271, 359, 421
DpnII GATC 4 cut(s) 249, 269, 357, 419
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 2 cut(s) 328, 363
Eco147I AGGCCT 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 364
FaiI YATR 8 cut(s) 38, 49, 75, 153, 170, 261, 362, 417
FatI CATG 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 90, 105
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 4 cut(s) 111, 295, 330, 365
HapII CCGG 2 cut(s) 342, 407
Hin1II CATG 1 cut(s) 364
HinfI GANTC 2 cut(s) 86, 227
HpaII CCGG 2 cut(s) 342, 407
HphI GGTGA 4 cut(s) 95, 274, 417, 544
Hpy166II GTNNAC 2 cut(s) 20, 132
Hpy188I TCNGA 6 cut(s) 10, 249, 274, 445, 463, 493
Hpy188III TCNNGA 2 cut(s) 105, 267
Hpy8I GTNNAC 2 cut(s) 20, 132
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 73, 205, 234
HpyF3I CTNAG 2 cut(s) 511, 518
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 364
Kzo9I GATC 4 cut(s) 249, 269, 357, 419
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 7 cut(s) 282, 309, 312, 355, 393, 420, 492
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 192
MaeI CTAG 2 cut(s) 90, 105
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 83, 208, 550
MalI GATC 4 cut(s) 251, 271, 359, 421
MboI GATC 4 cut(s) 249, 269, 357, 419
MboII GAAGA 1 cut(s) 93
MflI RGATCY 2 cut(s) 269, 419
MlsI TGGCCA 2 cut(s) 330, 365
MluCI AATT 1 cut(s) 188
MluNI TGGCCA 2 cut(s) 330, 365
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 101, 274, 433, 495
Mox20I TGGCCA 2 cut(s) 330, 365
MscI TGGCCA 2 cut(s) 330, 365
Msp20I TGGCCA 2 cut(s) 330, 365
MspI CCGG 2 cut(s) 342, 407
MspR9I CCNGG 2 cut(s) 297, 407
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 297
NciI CCSGG 1 cut(s) 407
NdeII GATC 4 cut(s) 249, 269, 357, 419
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 2 cut(s) 411, 421
NmuCI GTSAC 2 cut(s) 83, 550
NspV TTCGAA 1 cut(s) 533
PceI AGGCCT 1 cut(s) 111
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 325
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 411, 421
PspPI GGNCC 2 cut(s) 293, 476
PsuI RGATCY 2 cut(s) 269, 419
PvuI CGATCG 1 cut(s) 252
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 4 cut(s) 249, 269, 357, 419
Sau96I GGNCC 2 cut(s) 293, 476
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 297, 407
SetI ASST 9 cut(s) 201, 266, 376, 415, 430, 436, 461, 512, 517
SfaNI GCATC 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 476
Sse9I AATT 1 cut(s) 188
SseBI AGGCCT 1 cut(s) 111
SspMI CTAG 2 cut(s) 90, 105
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 295, 405
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 533
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 83, 550
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 83, 550
TspDTI ATGAA 1 cut(s) 515
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 476
XbaI TCTAGA 1 cut(s) 104
XspI CTAG 2 cut(s) 90, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.